EsuBft586_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft586_10a-0001
Unique NameEsuBft586_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_370contigScaffold_370:812765..814325 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft586_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length80
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003420.1
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft586_10aEsuBft586_10aEctocarpus subulatus male Bft15bgeneScaffold_370 812765..814325 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_10a-0001-exonagat-exon-30847Ectocarpus subulatus male Bft15bexonScaffold_370 812765..813070 -
EsuBft586_10a-0001-exonagat-exon-30846Ectocarpus subulatus male Bft15bexonScaffold_370 813702..813733 -
EsuBft586_10a-0001-exonEsuBft586_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_370 813863..814325 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_10a-0001-cdsEsuBft586_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_370 812765..813070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft586_10a-0001EsuBft586_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_370 812765..814325 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft586_10a-0001 ID=EsuBft586_10a-0001|Name=EsuBft586_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=801bp|location=Sequence derived from alignment at Scaffold_370:812765..814325- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCCTAGAGGCTCTAAAAGCTGCCCGGGAGCTCGTTTTTTTTCCTGC
TGCTGGCGCTCCAGCTTCGACTGTCGAGAGTCTCGCCCAGTCGGGCCAGA
TCAAGACCGACGCTACGGCCACCGGGATGCACGGGAGGGTGGTGGGTTTG
GGGAGGGCTACGGGGGCATCTTCGGAAGACGGGGTGTGCGGGCAGGCGGT
GGCAGAGCATTGTAAGGAGAGGAAGGAGGGTAGCGAGGCGAAGGGTCTCT
CGGAGGAGGACGTGGGGGATGGTTTCGACGCAGGGCCGGGGGAGGAATTG
TCGAGGGCGGTGACGGAGCAGGATGTCGAAGGTGACGGCGATAGTACCGT
GGGACTGAAGAGGGAGAAGGGCGCTGACCCTGACTCGGTGGCACCTCGTC
AAGCCGGAAAGTTGCTCAAGACGGAACAAGGCAAATCCTCTCGCTCGCAA
ACAAGAGAATCACAATCGGGGGTCAGCTACCTAGAGACGATACAGGTGCA
ATTTTTGCAAAGAAAAGTGATCCAGCCGGTATTTGAACTCGTCGTGATTC
AACAGCTTCATGTGTCGACCAAAGACCTCCAGTGCTCGTCATTGACGCTC
AGCGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTAGTGGTTGGTAGAGG
CTATCTGCCACTCGAACGCCTGGCTGGCTGCAAGAAGAACCACGAGGCCG
GAGTGCCCCCGGCTACGGCCGGCAACATGATGACCGGGCCGGGCCTCATA
CCGGAGTCAAAAAGGTTACCTCGAATCCTTCCGCGCGGTCTGGTGTGTTG
A
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protein sequence of EsuBft586_10a-0001

>EsuBft586_10 ID=EsuBft586_10|Name=EsuBft586_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=266bp
MPLEALKAARELVFFPAAGAPASTVESLAQSGQIKTDATATGMHGRVVGL
GRATGASSEDGVCGQAVAEHCKERKEGSEAKGLSEEDVGDGFDAGPGEEL
SRAVTEQDVEGDGDSTVGLKREKGADPDSVAPRQAGKLLKTEQGKSSRSQ
TRESQSGVSYLETIQVQFLQRKVIQPVFELVVIQQLHVSTKDLQCSSLTL
SEACRRAPTLVVVVGRGYLPLERLAGCKKNHEAGVPPATAGNMMTGPGLI
PESKRLPRILPRGLVC
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mRNA from alignment at Scaffold_370:812765..814325-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft586_10a-0001 ID=EsuBft586_10a-0001|Name=EsuBft586_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1561bp|location=Sequence derived from alignment at Scaffold_370:812765..814325- (Ectocarpus subulatus male Bft15b)
ATGCCCCTAGAGGCTCTAAAAGCTGCCCGGGAGCTCGTTTTTTTTCCTGC
TGCTGGCGCTCCAGCTTCGACTGTCGAGAGTCTCGCCCAGTCGGGCCAGA
TCAAGACCGACGCTACGGCCACCGGGATGCACGGGAGGGTGGTGGGTTTG
GGGAGGGCTACGGGGGCATCTTCGGAAGACGGGGTGTGCGGGCAGGCGGT
GGCAGAGCATTGTAAGGAGAGGAAGGAGGGTAGCGAGGCGAAGGGTCTCT
CGGAGGAGGACGTGGGGGATGGTTTCGACGCAGGGCCGGGGGAGGAATTG
TCGAGGGCGGTGACGGAGCAGGATGTCGAAGGTGACGGCGATAGTACCGT
GGGACTGAAGAGGGAGAAGGGCGCTGACCCTGACTCGGTGGCACCTCGTC
AAGCCGGAAAGTTGCTCAAGACGGAACAAGGCAAATCCTCTCGCTCGCAA
ACAAGAGAATCACGTAAACACACGCTGGGCGAGATAAAGTATCGGCTGAA
GCAGTCTCGATATCGAGACTAGCGGATGTCGACAAAGGCTGTAGTCTACA
TGTTGTTGTTGTTGCCCCCCAAGACAAGCTCGAAAACGTCAGAATCGGGG
GTCAGCTACCTAGAGACGATACAGGTGACCCCCTCTCCTCCCTTGCCATA
GCCCTGATGGTAGGGGACCTCTCCGTGTTTGAAACCTACGGTTTTATCAA
TTCTGCAGAGCGTTGGAAGAGAAAACGGGCGCGTTGATCCGCCACCCTCG
TTACATCGCTCACGCCTCCCCTCCAACATTTTTCTCTCCGCTTACTTGCA
CTTTGTATCAATTCAAAGAAAAAACCTGTCGCGCAAGGGGGGCGATAGGA
CACGCAGCTTAATCAACTCACTAAGCTACTCCTTTCCGCGCGCGCTCGCC
AACCAAACTCACGACCCGCGGACGAGCCTAGGGGCCAACCGCCGTCTAAC
TTTGGAGCCAAGTAAAAGGTTCACCAGGAATGATCCGTTTGTCCTTTTTT
ACCCTGTCGCATTCCCTCTCTTCGCTTGCCACCTTGCCGATGTCTCTTGC
ACTGTTAACAGCGTCATGGAGGCGATCCTTATTCGATCAAGTTACACCAT
TAGAGCAATCAACATTGACTGCTCTAATGGTATAACCTGATCGAAAAAAG
ATCTGCGCTCAGCTCATTGGCACCCGGCTGGATCACATTTAATCACTGGG
ATTGAGAGTAGGGATCTCCGGGGACGGACCCCTCGCCAGACGCTGATGGT
TTTAGGTGCAATTTTTGCAAAGAAAAGTGATCCAGCCGGTATTTGAACTC
GTCGTGATTCAACAGCTTCATGTGTCGACCAAAGACCTCCAGTGCTCGTC
ATTGACGCTCAGCGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTAGTGG
TTGGTAGAGGCTATCTGCCACTCGAACGCCTGGCTGGCTGCAAGAAGAAC
CACGAGGCCGGAGTGCCCCCGGCTACGGCCGGCAACATGATGACCGGGCC
GGGCCTCATACCGGAGTCAAAAAGGTTACCTCGAATCCTTCCGCGCGGTC
TGGTGTGTTGA
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Coding sequence (CDS) from alignment at Scaffold_370:812765..814325-

>EsuBft586_10a-0001 ID=EsuBft586_10a-0001|Name=EsuBft586_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=801bp|location=Sequence derived from alignment at Scaffold_370:812765..814325- (Ectocarpus subulatus male Bft15b)
ATGCCCCTAGAGGCTCTAAAAGCTGCCCGGGAGCTCGTTTTTTTTCCTGC
TGCTGGCGCTCCAGCTTCGACTGTCGAGAGTCTCGCCCAGTCGGGCCAGA
TCAAGACCGACGCTACGGCCACCGGGATGCACGGGAGGGTGGTGGGTTTG
GGGAGGGCTACGGGGGCATCTTCGGAAGACGGGGTGTGCGGGCAGGCGGT
GGCAGAGCATTGTAAGGAGAGGAAGGAGGGTAGCGAGGCGAAGGGTCTCT
CGGAGGAGGACGTGGGGGATGGTTTCGACGCAGGGCCGGGGGAGGAATTG
TCGAGGGCGGTGACGGAGCAGGATGTCGAAGGTGACGGCGATAGTACCGT
GGGACTGAAGAGGGAGAAGGGCGCTGACCCTGACTCGGTGGCACCTCGTC
AAGCCGGAAAGTTGCTCAAGACGGAACAAGGCAAATCCTCTCGCTCGCAA
ACAAGAGAATCACAATCGGGGGTCAGCTACCTAGAGACGATACAGGTGCA
ATTTTTGCAAAGAAAAGTGATCCAGCCGGTATTTGAACTCGTCGTGATTC
AACAGCTTCATGTGTCGACCAAAGACCTCCAGTGCTCGTCATTGACGCTC
AGCGAGGCGTGCCGGCGCGCACCGACTTTGGTGGTAGTGGTTGGTAGAGG
CTATCTGCCACTCGAACGCCTGGCTGGCTGCAAGAAGAACCACGAGGCCG
GAGTGCCCCCGGCTACGGCCGGCAACATGATGACCGGGCCGGGCCTCATA
CCGGAGTCAAAAAGGTTACCTCGAATCCTTCCGCGCGGTCTGGTGTGTTG
A
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