EsuBft5759_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft5759_2a-0001
Unique Name	EsuBft5759_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_630	contig	Scaffold_630:182140..183194 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft5759_2
Protein domains	IPR008906
Protein domains	IPR012337
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	105
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0046983

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft5759_2a	EsuBft5759_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_630 182140..183194 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5759_2a-0001-exon	EsuBft5759_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_630 182140..183194 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5759_2a-0001-cds	EsuBft5759_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_630 182140..182802 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5759_2a-0001-exon	agat-three_prime_utr-18620	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_630 182803..183194 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft5759_2a-0001	EsuBft5759_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_630 182140..182802 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_630:182140..183194+
coding sequence from alignment at Scaffold_630:182140..183194+

spliced messenger RNA

>EsuBft5759_2a-0001 ID=EsuBft5759_2a-0001|Name=EsuBft5759_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1055bp|location=Sequence derived from alignment at Scaffold_630:182140..183194+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGAGAACGGAGTGGGGAAGGCGCTGCAGAGGGTGGAGCGACTGTT
CGTGCTGCTGGATCCAAGGCGGAAAACGCTGGACGACACACATCTCAGGA
ACGGCTCCTCGGACCTCAAGACCCAAGTCGAAGCGGACTTGAAGGCGTTC
ATCGGCAAGTTCGCGCAAGAGTCTGCTCCGTCCACGCCTGCGCCTGCGCC
AGTGGTCAACGTCGACACCGCGGACCCTGCTCGCAAGAAGAAGAAGCCTA
CTTCGAGATTGGAGCAACGGCGCGCTGCACGTTTGGCGGAGGCAGTGGCA
GGCGGTGGTGGTGGCAGCGGCACCACCGATCCTCAGGCTGCCGGCACGGG
CCGGCGCGTGCTGATCGAGCGAGAGATGCTGGTATACTTGGCAGAGCAGC
CTCAGGTCGACGTCGATGACTTCAACCTTCTGGGATTTTGGAACCGGCGG
GGCACTGACAGCGTGTCCGCGGCGACTGGGAAGGTTACGTCTCCGGCCGA
GATGCCGTACCTGGCGTTTATCGCTCGGTTGCACCTTGGGATCGAGGCCA
CCAGCTGCCAGGCCGAGCGCAATTTTTCAGCGCTCGCTCACCTCATCGGC
GACTTTCGCTGCAACATGCTTTCGCACAGGGTCGAGCGCATGATGCTGGT
CCGGCTCAACTAGCACCTGCTTGCCGAGGTTCGCGCGTACGACGCTGCTG
TTGCGCGGGCACGAGCTATGGCCGCCAATAGCGCAGAGCAATCCGCGGTT
GCACAGGAGGAGAGAGCGAACACGGCGATTGACGTCCCCTTGTAGACTAG
GGTAGCCGAGAGTGTAGAGTAGCCCGCGGTCGTGCAAGAGGGGTGCCCCT
GCTGAGTGTGGTTGTGGTTTTGCTGTTTTGTTCGGTGTCCGTTCATCGTA
GTACAAGTATGTATTTTGTCTTTTCTGTGTTTTTCGTCGTTCATGCTTTC
TTGTGGCAGTGACTTGTGTCTTTTGCCTTTTGTCTGGTCTCTTGTCTCGT
CTTTTTTCTTAGCTTCTGGTCTTTTGTGTTTTGTCTTCTCCAGCTGGTCT
TCTGA

protein sequence of EsuBft5759_2a-0001

>EsuBft5759_2 ID=EsuBft5759_2|Name=EsuBft5759_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=220bp
MDENGVGKALQRVERLFVLLDPRRKTLDDTHLRNGSSDLKTQVEADLKAF
IGKFAQESAPSTPAPAPVVNVDTADPARKKKKPTSRLEQRRAARLAEAVA
GGGGGSGTTDPQAAGTGRRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRR
GTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIG
DFRCNMLSHRVERMMLVRLN

mRNA from alignment at Scaffold_630:182140..183194+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft5759_2a-0001 ID=EsuBft5759_2a-0001|Name=EsuBft5759_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1055bp|location=Sequence derived from alignment at Scaffold_630:182140..183194+ (Ectocarpus subulatus male Bft15b)
ATGGACGAGAACGGAGTGGGGAAGGCGCTGCAGAGGGTGGAGCGACTGTT
CGTGCTGCTGGATCCAAGGCGGAAAACGCTGGACGACACACATCTCAGGA
ACGGCTCCTCGGACCTCAAGACCCAAGTCGAAGCGGACTTGAAGGCGTTC
ATCGGCAAGTTCGCGCAAGAGTCTGCTCCGTCCACGCCTGCGCCTGCGCC
AGTGGTCAACGTCGACACCGCGGACCCTGCTCGCAAGAAGAAGAAGCCTA
CTTCGAGATTGGAGCAACGGCGCGCTGCACGTTTGGCGGAGGCAGTGGCA
GGCGGTGGTGGTGGCAGCGGCACCACCGATCCTCAGGCTGCCGGCACGGG
CCGGCGCGTGCTGATCGAGCGAGAGATGCTGGTATACTTGGCAGAGCAGC
CTCAGGTCGACGTCGATGACTTCAACCTTCTGGGATTTTGGAACCGGCGG
GGCACTGACAGCGTGTCCGCGGCGACTGGGAAGGTTACGTCTCCGGCCGA
GATGCCGTACCTGGCGTTTATCGCTCGGTTGCACCTTGGGATCGAGGCCA
CCAGCTGCCAGGCCGAGCGCAATTTTTCAGCGCTCGCTCACCTCATCGGC
GACTTTCGCTGCAACATGCTTTCGCACAGGGTCGAGCGCATGATGCTGGT
CCGGCTCAACTAGCACCTGCTTGCCGAGGTTCGCGCGTACGACGCTGCTG
TTGCGCGGGCACGAGCTATGGCCGCCAATAGCGCAGAGCAATCCGCGGTT
GCACAGGAGGAGAGAGCGAACACGGCGATTGACGTCCCCTTGTAGACTAG
GGTAGCCGAGAGTGTAGAGTAGCCCGCGGTCGTGCAAGAGGGGTGCCCCT
GCTGAGTGTGGTTGTGGTTTTGCTGTTTTGTTCGGTGTCCGTTCATCGTA
GTACAAGTATGTATTTTGTCTTTTCTGTGTTTTTCGTCGTTCATGCTTTC
TTGTGGCAGTGACTTGTGTCTTTTGCCTTTTGTCTGGTCTCTTGTCTCGT
CTTTTTTCTTAGCTTCTGGTCTTTTGTGTTTTGTCTTCTCCAGCTGGTCT
TCTGA

Coding sequence (CDS) from alignment at Scaffold_630:182140..183194+

>EsuBft5759_2a-0001 ID=EsuBft5759_2a-0001|Name=EsuBft5759_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=663bp|location=Sequence derived from alignment at Scaffold_630:182140..183194+ (Ectocarpus subulatus male Bft15b)
ATGGACGAGAACGGAGTGGGGAAGGCGCTGCAGAGGGTGGAGCGACTGTT
CGTGCTGCTGGATCCAAGGCGGAAAACGCTGGACGACACACATCTCAGGA
ACGGCTCCTCGGACCTCAAGACCCAAGTCGAAGCGGACTTGAAGGCGTTC
ATCGGCAAGTTCGCGCAAGAGTCTGCTCCGTCCACGCCTGCGCCTGCGCC
AGTGGTCAACGTCGACACCGCGGACCCTGCTCGCAAGAAGAAGAAGCCTA
CTTCGAGATTGGAGCAACGGCGCGCTGCACGTTTGGCGGAGGCAGTGGCA
GGCGGTGGTGGTGGCAGCGGCACCACCGATCCTCAGGCTGCCGGCACGGG
CCGGCGCGTGCTGATCGAGCGAGAGATGCTGGTATACTTGGCAGAGCAGC
CTCAGGTCGACGTCGATGACTTCAACCTTCTGGGATTTTGGAACCGGCGG
GGCACTGACAGCGTGTCCGCGGCGACTGGGAAGGTTACGTCTCCGGCCGA
GATGCCGTACCTGGCGTTTATCGCTCGGTTGCACCTTGGGATCGAGGCCA
CCAGCTGCCAGGCCGAGCGCAATTTTTCAGCGCTCGCTCACCTCATCGGC
GACTTTCGCTGCAACATGCTTTCGCACAGGGTCGAGCGCATGATGCTGGT
CCGGCTCAACTAG