EsuBft5752_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5752_2a-0001
Unique NameEsuBft5752_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:614463..615336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FU69
ProteomeIdEsuBft5752_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2880.D7FU69|-
Length73
Hectar predicted targeting categoryother localisation
Evalue9.79e-51
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5752_2aEsuBft5752_2aEctocarpus subulatus male Bft15bgeneScaffold_630 614463..615336 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5752_2a-0001-exonagat-exon-32968Ectocarpus subulatus male Bft15bexonScaffold_630 614463..614685 +
EsuBft5752_2a-0001-exonEsuBft5752_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 614824..615336 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5752_2a-0001-cdsEsuBft5752_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 614463..614685 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5752_2a-0001-exonagat-three_prime_utr-18619Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_630 615072..615336 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5752_2a-0001EsuBft5752_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 614463..615071 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5752_2a-0001 ID=EsuBft5752_2a-0001|Name=EsuBft5752_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=736bp|location=Sequence derived from alignment at Scaffold_630:614463..615336+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGAATATGGAGTTTTTCTCCGGTTGGGGGTGTACACCCAAGGCGTC
CTCTCATGCGAAGGCTTATTCGTTGTGTGGGCCGCTTTCTCCTATCCCCA
ATGCTCGCGCAGGCAAATCTGGACGCAGCAACGGGGAGGAGGACGAGGAG
GAGGGAGCCATCCCTGCCAAAGCACTCCTTACGTTTCGAAATGTTGTCGG
GATGGTCGCCATAGCACGTGACACCGGACCGGACGGGGGTGGTTCCGTCG
GAGGGAGCGGCAGCAACGCGGAGCGCAAGGGCCCACACTGCATGATGCGG
CTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTCTCATAGAGAG
CCGCTTGCAGGCGACCCGGCAGGACCTGCACACGTCATCAGTCGGGCCGC
GGAACGATATGTGGACAGAGGTCACCACGCGCTTCCGAGACCCTGACCAC
CAGGTACACGGTCATGGGTAGGGGATTGATTAGGACGGATCGGCCGAGAA
CGTTGTACATAGACAGCAGTCGATATGTATGTTGACACGCATGCCTTTTT
TTTGTGGTCATTTTAGCCATCGTACTCAACACCTCATGACGTCCACGGAC
GATCGCCATTGTTTTAGGTAAAAACCCATGAGGTATCCACCCCCAAGAGC
GGGTCAACCTGCTGTTGACGTACACCGGTAACTTATGGTGTTGTTGCTGA
CGCCGACGCCGATCATACTGCTGTAGTTGCTTCGAA
back to top

protein sequence of EsuBft5752_2a-0001

>EsuBft5752_2 ID=EsuBft5752_2|Name=EsuBft5752_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MRNMEFFSGWGCTPKASSHAKAYSLCGPLSPIPNARAGKSGRSNGEEDEE
EGAIPAKALLTFRNVVGMVAIARDTGPDGGGSVGGSGSNAERKGPHCMMR
LVGILCEDAIRPLLIESRLQATRQDLHTSSVGPRNDMWTEVTTRFRDPDH
QVHGHG
back to top

mRNA from alignment at Scaffold_630:614463..615336+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5752_2a-0001 ID=EsuBft5752_2a-0001|Name=EsuBft5752_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=874bp|location=Sequence derived from alignment at Scaffold_630:614463..615336+ (Ectocarpus subulatus male Bft15b)
ATGAGGAATATGGAGTTTTTCTCCGGTTGGGGGTGTACACCCAAGGCGTC
CTCTCATGCGAAGGCTTATTCGTTGTGTGGGCCGCTTTCTCCTATCCCCA
ATGCTCGCGCAGGCAAATCTGGACGCAGCAACGGGGAGGAGGACGAGGAG
GAGGGAGCCATCCCTGCCAAAGCACTCCTTACGTTTCGAAATGTTGTCGG
GATGGTCGCCATAGCACGTGACAGTAAAGCCGTTTAAAGTCGATAATGTG
GAGTACAGTGCGGCGGACCTTTACGACGCCCTGGCCAAGGTAGACGAAGC
GGGAACGGGGATTCTGCGGGCGGGAGTGCTCCCACTGGTGGTTCATCGAC
GGGTGGTGCAGCCGGACCGGACGGGGGTGGTTCCGTCGGAGGGAGCGGCA
GCAACGCGGAGCGCAAGGGCCCACACTGCATGATGCGGCTCGTTGGGATC
CTGTGCGAAGACGCCATCCGCCCACTTCTCATAGAGAGCCGCTTGCAGGC
GACCCGGCAGGACCTGCACACGTCATCAGTCGGGCCGCGGAACGATATGT
GGACAGAGGTCACCACGCGCTTCCGAGACCCTGACCACCAGGTACACGGT
CATGGGTAGGGGATTGATTAGGACGGATCGGCCGAGAACGTTGTACATAG
ACAGCAGTCGATATGTATGTTGACACGCATGCCTTTTTTTTGTGGTCATT
TTAGCCATCGTACTCAACACCTCATGACGTCCACGGACGATCGCCATTGT
TTTAGGTAAAAACCCATGAGGTATCCACCCCCAAGAGCGGGTCAACCTGC
TGTTGACGTACACCGGTAACTTATGGTGTTGTTGCTGACGCCGACGCCGA
TCATACTGCTGTAGTTGCTTCGAA
back to top

Coding sequence (CDS) from alignment at Scaffold_630:614463..615336+

>EsuBft5752_2a-0001 ID=EsuBft5752_2a-0001|Name=EsuBft5752_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_630:614463..615336+ (Ectocarpus subulatus male Bft15b)
ATGAGGAATATGGAGTTTTTCTCCGGTTGGGGGTGTACACCCAAGGCGTC
CTCTCATGCGAAGGCTTATTCGTTGTGTGGGCCGCTTTCTCCTATCCCCA
ATGCTCGCGCAGGCAAATCTGGACGCAGCAACGGGGAGGAGGACGAGGAG
GAGGGAGCCATCCCTGCCAAAGCACTCCTTACGTTTCGAAATGTTGTCGG
GATGGTCGCCATAGCACGTGACACCGGACCGGACGGGGGTGGTTCCGTCG
GAGGGAGCGGCAGCAACGCGGAGCGCAAGGGCCCACACTGCATGATGCGG
CTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTCTCATAGAGAG
CCGCTTGCAGGCGACCCGGCAGGACCTGCACACGTCATCAGTCGGGCCGC
GGAACGATATGTGGACAGAGGTCACCACGCGCTTCCGAGACCCTGACCAC
CAGGTACACGGTCATGGGTAG
back to top