EsuBft574_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft574_7a-0001
Unique NameEsuBft574_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:55730..59425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog864702.OsccyDRAFT_3794
ProteomeIdEsuBft574_7
Protein domainsIPR014710
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR011051
Protein domainsIPR013096
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Notetetracenomycin polyketide synthesis protein os:streptomyces glaucescens gn:tcmj pe:4 sv:2 [Automatic annotation]
Nb exon3
Max annot lvl1117|Cyanobacteria
Length1231
Hectar predicted targeting categorysignal peptide
Evalue3.2e-22
EggNOG OGsCOG0662@1|root,COG0662@2|Bacteria,1G8P1@1117|Cyanobacteria,1HCM3@1150|Oscillatoriales
Ec32 ortholog descriptionCupin 2, conserved barrel
Ec32 orthologEc-10_001950.1
Date last modified2016-06-14
Date creation2016-06-14
DescriptionCupin domain-containing protein
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7aEsuBft574_7aEctocarpus subulatus male Bft15bgeneScaffold_417 55730..59425 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7a-0001EsuBft574_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 56109..59176 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7a-0001-exonagat-exon-88073Ectocarpus subulatus male Bft15bexonScaffold_417 55730..56312 -
EsuBft574_7a-0001-exonagat-exon-88072Ectocarpus subulatus male Bft15bexonScaffold_417 57547..57708 -
EsuBft574_7a-0001-exonEsuBft574_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 58940..59425 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7a-0001-exonagat-three_prime_utr-18614Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 55730..56108 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7a-0001-cdsEsuBft574_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 56109..56312 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_7a-0001-exonagat-five_prime_utr-11850Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 59177..59425 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft574_7a-0001 ID=EsuBft574_7a-0001|Name=EsuBft574_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1231bp|location=Sequence derived from alignment at Scaffold_417:55730..59425- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTGTGGTGCGTGCCGTGCATAGCTCAGCAGGGCCTTAAACAACGGGAAA
AGGCTCGCCTCCTGCTGCTCGTGTAGTTGCGACCCTGTTCCGGCGAACCT
CATCATCTTGAACATAGCAGTCAGCCAAAACTGCTGTACTCGGCGCCTGG
TTGGGTGCGCGGTTTCATCTGTTCCTTGTACTACTGCGCGGGAATTCGGC
ACGACCGCAGTCGCGGAGCAGCGCCAATCACGTCCTGCCAAAGGACATCA
TGGCCTCGCAACACTACCCTCGCCGAAGAATAACGATAACCGGCTGCGTG
CTGGTAGGGTTGGGGCTTGCGTTGTTGCGGCTACCTCTCGACCAGAAATC
CTACGCGAAAGAGTCGGCCAAGTTTCTTCGCAAAGACCCCAAGGGAAAAC
GAGACAAGCCGCGGGGGGGGATGGTCCGGTTAAGCGAGCTGAAGTCGATA
CCCGTCAACCACGACGGCAGTGGAGCCACGAAACAGACAATGATCCTCAA
CGGCCAGGTGCCGCACTTGACGGGGTTCACCCGGGCCGTCTTCTCGCCGG
GGGACGAGGTCGAGCTCCACTGGCATACGAGCATGGATGAGGTGTTCTAC
GCGGCGGAGGGGAAGGGCACGATCGAAGTGGACGGCACGGTTGTACAGCT
TACTCCCGGCACGTGCGTGCACGTGGCGGCCGGGCAGAAGCACTCCTTGG
TTAACAAAGGCGACGTGGACATGGTCCTGTTTTACTTCGGCATCGCGGTG
GCGCCCACCACAGAAGATGGCGGCGGCAGCGGCGGCAGGGGGGGCAAGGG
CGGGACCGGCGGCGGGGGCGGGGGGAATGCCCTGCACGCGATAGGGGCAT
GATTTTTCTCTCCTGTGTCGAGCATTGATGGATTGTACAATTTGGTGGGC
AAGATTGCCTTGGGTTGGAGTGTGGGTGGAAAGTGGCGTGATTGTGTCCG
GCGTAGTACTGTAGGTATTGGAGTTTTACGTTGGCGAGGTCTGTACAGTG
AGTTTATTTTCACGAACCCAAATGACAAAATCTGTGAACACAAACAGTGT
CCACATCTAGGCGTTCAGTTTTGCCATTTTTTTGTGCCTTGCTTTCCAGG
CCCGATGGTTGCTTCTATCCGTGTTGAGTTGTTTTGTATGGCATTCACGA
GTAACATCTGAATAGGTTTGTTTGTGCCGCTGCACCGGGGTAGCAGCCAC
CATTCCCGGGTCAATCGCCCGTGAGTGGCAG
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protein sequence of EsuBft574_7a-0001

>EsuBft574_7 ID=EsuBft574_7|Name=EsuBft574_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MASQHYPRRRITITGCVLVGLGLALLRLPLDQKSYAKESAKFLRKDPKGK
RDKPRGGMVRLSELKSIPVNHDGSGATKQTMILNGQVPHLTGFTRAVFSP
GDEVELHWHTSMDEVFYAAEGKGTIEVDGTVVQLTPGTCVHVAAGQKHSL
VNKGDVDMVLFYFGIAVAPTTEDGGGSGGRGGKGGTGGGGGGNALHAIGA
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mRNA from alignment at Scaffold_417:55730..59425-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft574_7a-0001 ID=EsuBft574_7a-0001|Name=EsuBft574_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3696bp|location=Sequence derived from alignment at Scaffold_417:55730..59425- (Ectocarpus subulatus male Bft15b)
CCTGTGGTGCGTGCCGTGCATAGCTCAGCAGGGCCTTAAACAACGGGAAA
AGGCTCGCCTCCTGCTGCTCGTGTAGTTGCGACCCTGTTCCGGCGAACCT
CATCATCTTGAACATAGCAGTCAGCCAAAACTGCTGTACTCGGCGCCTGG
TTGGGTGCGCGGTTTCATCTGTTCCTTGTACTACTGCGCGGGAATTCGGC
ACGACCGCAGTCGCGGAGCAGCGCCAATCACGTCCTGCCAAAGGACATCA
TGGCCTCGCAACACTACCCTCGCCGAAGAATAACGATAACCGGCTGCGTG
CTGGTAGGGTTGGGGCTTGCGTTGTTGCGGCTACCTCTCGACCAGAAATC
CTACGCGAAAGAGTCGGCCAAGTTTCTTCGCAAAGACCCCAAGGGAAAAC
GAGACAAGCCGCGGGGGGGGATGGTCCGGTTAAGCGAGCTGAAGTCGATA
CCCGTCAACCACGACGGCAGTGGAGCCACGAAACAGGTGCACACCAACGG
TGAAATGCGTTGTTGTCGTTGTTGTCGTTGTTGTTGTCGTTGTTGTCTTG
TCGTCACATTAACCGTTCCGATTTCTCTATCCTGTACTTCCATCGGTGCA
TAGTGTATCATCTACTACCAGGAGTAGTCTATTCATACAACAAACAACAG
CAGTTTGCCGCGGTCGATGTCACAGGTGGCTGAATAACTCACCCCACAAA
ACTAAAACGATGGAACGGAGGGCCCGCAAGTCAAGTAGAAATCAGAGACA
GAGCCCTCCGCTCGCCTCTACACGTTATGCGAGGTAAACCAAAGACTACA
GCAGTAGTCTATAGGTACATAAAAGTCAACATCACGGTTCAGAGGGAGGG
TAGGCATATTCCCTGGTTCAATCTTGAGACAGCCATCTGGAAAACAAATG
TTTCCTAAAAGAAAGAAAAAGAAACAGAGAGGACACATCCCAACCACTAT
TGCTGCAACACGACCGAACAAACGAACAAAACTACAGGACCACCAAAAAC
AGCAAAGGCACATCATCGCTCGTGGGGGGTCGGTGCAATGGTGCAGCGAT
GGGGGGGGGTGTACTCATCTGGTCCGTGCTGTGTTGTTCGTCCTACGTGA
TGACTTGCCACATTCGGTGAACATCTGTCGGTGGCTAATGCTTAGACTAT
TGCGGCGGCGTTCACGATGGGTGCGGTGTGTTTGTGTGTGTGCTACTCGC
CGAGCTGTGCGCAGCGTGTACAGCTGAGCACTCCCAGTTCTTTCCTTGTC
GGGTATGTGATTCTGGCCTACCAGAATAGGCTCATCTCTCAGTAAAAAAA
GGGCGTAGTCATCCAATCCTGGCTCGCCCACCCACTTCGTCAGTTGGCGC
TGCATAGTGCGATTGCGAGGGTTCATCTATCTTCTTGCATGCATACTGCT
TCCTCTCTTCTCCCGTCTCCCTCTCTAGTTTTCGTCTCTCGCATGTCTTG
CCCGCTGCCCTCCGCCAGCCGTCCCCGCGCGCTTGCGAATCATCGCAACT
GCCGATGAGACTTGGACTACAGCCAAAGCGACCATGATTCTCATCGACCG
AGTGCAGCGGCTGGCCGGGTTTTACTATGCCCGCGAGCCCGCTCTCTTCC
CGCCGGTCCTTGTGTCTACCACAGCGGTGTCTTGCTTACCTAAAGACTCC
TCTGCCCTCCCTTTCCCCTTCTCCTTTGCCTCTCTACATCCCAACCGAAC
GAAACCGGGACGCGTAGACAATGATCCTCAACGGCCAGGTGCCGCACTTG
ACGGGGTTCACCCGGGCCGTCTTCTCGCCGGGGGACGAGGTCGAGCTCCA
CTGGCATACGAGCATGGATGAGGTGTTCTACGCGGCGGAGGGGAAGGGCA
CGATCGAAGTGGACGGCACGGTTGTACAGGTGGTCTGTAGTCGTCGTTGA
TGGGTAGCCCCCGCCCTCTCCACCTCTAACCCTTGCCAACAAGGGCGACT
ATTTCTATTCAGCAACGATCACAAGGACGTTGGACAGCAGTGTTGTATGG
GAGTGTCCGACTGTGCAATTGTGTCGGAGATGGGTGGGACCTGCAAAGAC
CGCAAGAGCTCACACCTACAGGTGCACGTCGGGAGGGATTTGCTCACACG
CCCTGTAGCGTACATCAGACCCCTACAGGTCAAGCTAGCTATTATTGTGA
TCAGTGGGTGCAGGTGATCCGCTTGTATTTGCCCCTTGGCGACCCATCTA
GCGCGAAGAGTTACTGCTGTTTGGATGCCGTCTAGTCTCTTGTGGGTTGC
GTACAAGTCTTCATTGGTCATTGGGAACCAGTTGATGGCTCAGATGAACG
AAACATAGAAAACATTCGCAATTGAAATGCAGACTTTTGTCACTGTTTTG
GCTGGTATCGTTCTGGTGAGCTCTGCACCAGCAGTACTGGTACTAGGTGA
CGTGCTAAGTATTAAACCAAACAGGATGGCGGGTGGTTCATCTACAAGCG
TTAACGATGGTCACCAAACCCACGAAACTTCATCGTTCTTTACGAAGCTT
CACGCGATGTGTGTGTGCATTTGCCCGATGAAGAAAGCAACCCTACAAAC
TATTGGTCTTATGTTTCTTCATCACCGCAGCGCACGCAGTATTCCTTCTT
GGGTGTCTGTGTAGTATTGTCCAGCATTGGATCAAGCGGGTTCGGGTCGG
TCTCGATCTTGAATAGAAAGTCAAGCAACATACAAAGTGCAATCCCGAGT
AAAACAAAAGATGTCACCGTTTGCACGCACATGCACATGGCGCTACCAGC
TACGCATGCTCTAGGTTGACCCGTCGGGCGCGGATCGTTGGGTTTGCCCT
AAGGTGTTGGCATGGGCGGACCATTTGTACATGCTTGCCCAAGAGTCATC
GTTAGGCGCGGGTCACGCGTACATGCTTGCCTCAGAGTGATTGGTGGCCG
CGGGCTATCCATGCCAGTTTGCAAAAGTATGGATGCATCTGAACGAATCA
TCTGCACTCATACTTTTCGTCCCAGGGTGCTCCCTCGGGCGAGGATACAC
TCGCTCCTTGTCTGCTGCATATGCATATGTTGTCTGCTGGCACACGCTCC
TGCTCGCTGATGTTGACGATGCTCTTGTTCTGTCTCCCCTTGTCAACGGT
GGAAACGAAACAGCTTACTCCCGGCACGTGCGTGCACGTGGCGGCCGGGC
AGAAGCACTCCTTGGTTAACAAAGGCGACGTGGACATGGTCCTGTTTTAC
TTCGGCATCGCGGTGGCGCCCACCACAGAAGATGGCGGCGGCAGCGGCGG
CAGGGGGGGCAAGGGCGGGACCGGCGGCGGGGGCGGGGGGAATGCCCTGC
ACGCGATAGGGGCATGATTTTTCTCTCCTGTGTCGAGCATTGATGGATTG
TACAATTTGGTGGGCAAGATTGCCTTGGGTTGGAGTGTGGGTGGAAAGTG
GCGTGATTGTGTCCGGCGTAGTACTGTAGGTATTGGAGTTTTACGTTGGC
GAGGTCTGTACAGTGAGTTTATTTTCACGAACCCAAATGACAAAATCTGT
GAACACAAACAGTGTCCACATCTAGGCGTTCAGTTTTGCCATTTTTTTGT
GCCTTGCTTTCCAGGCCCGATGGTTGCTTCTATCCGTGTTGAGTTGTTTT
GTATGGCATTCACGAGTAACATCTGAATAGGTTTGTTTGTGCCGCTGCAC
CGGGGTAGCAGCCACCATTCCCGGGTCAATCGCCCGTGAGTGGCAG
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Coding sequence (CDS) from alignment at Scaffold_417:55730..59425-

>EsuBft574_7a-0001 ID=EsuBft574_7a-0001|Name=EsuBft574_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=603bp|location=Sequence derived from alignment at Scaffold_417:55730..59425- (Ectocarpus subulatus male Bft15b)
ATGGCCTCGCAACACTACCCTCGCCGAAGAATAACGATAACCGGCTGCGT
GCTGGTAGGGTTGGGGCTTGCGTTGTTGCGGCTACCTCTCGACCAGAAAT
CCTACGCGAAAGAGTCGGCCAAGTTTCTTCGCAAAGACCCCAAGGGAAAA
CGAGACAAGCCGCGGGGGGGGATGGTCCGGTTAAGCGAGCTGAAGTCGAT
ACCCGTCAACCACGACGGCAGTGGAGCCACGAAACAGACAATGATCCTCA
ACGGCCAGGTGCCGCACTTGACGGGGTTCACCCGGGCCGTCTTCTCGCCG
GGGGACGAGGTCGAGCTCCACTGGCATACGAGCATGGATGAGGTGTTCTA
CGCGGCGGAGGGGAAGGGCACGATCGAAGTGGACGGCACGGTTGTACAGC
TTACTCCCGGCACGTGCGTGCACGTGGCGGCCGGGCAGAAGCACTCCTTG
GTTAACAAAGGCGACGTGGACATGGTCCTGTTTTACTTCGGCATCGCGGT
GGCGCCCACCACAGAAGATGGCGGCGGCAGCGGCGGCAGGGGGGGCAAGG
GCGGGACCGGCGGCGGGGGCGGGGGGAATGCCCTGCACGCGATAGGGGCA
TGA
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