EsuBft574_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft574_6a-0001
Unique NameEsuBft574_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:60124..65123 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LGI5
ProteomeIdEsuBft574_6
Protein domainsIPR002672
Protein domainsPTHR10544
Protein domainsIPR029004
Ownerapollo_admin@sb-roscoff.fr
Note60s ribosomal protein l28-1 os:arabidopsis thaliana gn:rpl28a pe:2 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1198
Hectar predicted targeting categoryother localisation
Evalue1.68e-103
EggNOG OGsKOG3412@1|root,KOG3412@2759|Eukaryota
Ec32 ortholog description60S ribosomal protein L28
Ec32 orthologEc-10_001940.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameRPL28
KEGG rclassRC00002,RC00031
KEGG koko:K00026,ko:K02903,ko:K06210
KEGG ReactionR00137,R00342,R03005,R07136
KEGG Pathwayko00020,ko00270,ko00620,ko00630,ko00710,ko00760,ko01100,ko01110,ko01120,ko01130,ko01200,ko03010,map00020,map00270,map00620,map00630,map00710,map00760,map01100,map01110,map01120,map01130,map01200,map03010
KEGG ModuleM00009,M00011,M00012,M00115,M00168,M00171,M00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030425,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0035770,GO:0036464,GO:0036477,GO:0042886,GO:0042995,GO:0043005,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044297,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0065007,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097447,GO:0097458,GO:0120025,GO:0120038,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EC1.1.1.37,2.7.7.1,2.7.7.18
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko03011
Cross References
External references for this mRNA
DatabaseAccession
GO0071822
GO0005488
GO0004553
GO0009506
GO0009507
GO0009735
GO0022402
GO0022625
GO0055085
GO0006412
GO0016070
GO0003735
GO0000226
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6aEsuBft574_6aEctocarpus subulatus male Bft15bgeneScaffold_417 60124..65123 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6a-0001EsuBft574_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 60745..65020 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6a-0001-exonagat-exon-88071Ectocarpus subulatus male Bft15bexonScaffold_417 60124..60891 -
EsuBft574_6a-0001-exonagat-exon-88070Ectocarpus subulatus male Bft15bexonScaffold_417 61116..61208 -
EsuBft574_6a-0001-exonEsuBft574_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 62975..63122 -
EsuBft574_6a-0001-exonagat-exon-88069Ectocarpus subulatus male Bft15bexonScaffold_417 64935..65123 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6a-0001-exonagat-three_prime_utr-18613Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 60124..60744 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6a-0001-cdsEsuBft574_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 60745..60891 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_6a-0001-exonagat-five_prime_utr-11849Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 65021..65123 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft574_6a-0001 ID=EsuBft574_6a-0001|Name=EsuBft574_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1198bp|location=Sequence derived from alignment at Scaffold_417:60124..65123- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGTCGTCAGATTGGCGGAAGTGTGTGGGTTGTGGTTTAGCGAGCGTCATA
GCAGCAGCGACGGGGAGCAGCAGCGCGGCAGACACACCCCAGCAGCAGCA
ACCATGACCAACGTGTCGAACGAGCTGGTGTGGTCCCTGGTGCGGAGGAA
CACCTGCTTCCTCTACAAGAGGAATGGCCAGACCAAGAGGTCCGGCAAAG
TCGTTCTGACGGCCGAGCCCAACAACTTGACGAACGTCAACTCGTACAAG
TACTCCGGCCTCGCGAACAGCAAGGCCGTCGGCATCCAGTTCGCCAAGGA
CCCCAAGGACCGCCCGTGCGCCGCCATCACCCTGAAGTCGTCCAAGAATG
GCAACAAGCCCAAGAAGTCAGTCGGCAGATCCTTGCTGAAGAAGACCCAC
CCAAGCGTGTCCCAGGCCATCATGAAGCAGACCGGCGGCACCAACTACCG
CCCTGACCTCCAGCACGCGGCGCTTGTCCGCTGGTCGAAGGTGCACCGTG
CGCTCCGCGTACAGAAGGGCGAGAGGAAGCCCATGACCGTGAACGCCGGC
CGCAAGAACCTCAAGGCCACCGCCTAAGTTTCCGTTCGCCACCGCTGGTG
CTGCTGATGATGCTGGTGCCACTATAATACCCTGCCACTGACTGGCTAGC
GAGTAAGAACATCATCGCCGGCTTCGTCGGTGCTCTTCTTTCTGGCCCGC
GAAGCTTTTCGAACGGCGTCGGACATGGGAATCGGTCACGTCGTGTCTAG
TGTCTAGTGGAAAGCTTTGCACTCTGTGCTTCGATGACTTGGCTTGCCAA
GGCGCTTGAAAAGTTGTTTAGTGCGGTCGATGGCGAAGAGATCTTTTAGC
CAGTCTGGATTTACGCTTTCATCCGTATGAGTGTGGTGGTGATGTCTCTC
GGTGGCTGAATAACGAACCCGTTGCTGCGAATTTCAATCTTTCGAAGCGC
TCTCTTAAATCTATGTGCGCTCTGTATGAGACGGATGTACCCGTGGTGAA
GCCAGTCATTGCTGGTCCCCACGCCCACGGCTGGACCGAGCACCCACGGT
TGTGGGGTGCTGCGCACAACGAACCAGAACAAGCAGGCGTTTCCGTCCGA
TGTTTCGCTCTCAACCGGAGTCGACTTGACTCCAGTCTCTGCAACCCCAT
TCTCCTGTGATGGGACGAGGCAGGCCGAGCACATGCGTTGCCTTTAAC
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protein sequence of EsuBft574_6a-0001

>EsuBft574_6 ID=EsuBft574_6|Name=EsuBft574_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=157bp
MTNVSNELVWSLVRRNTCFLYKRNGQTKRSGKVVLTAEPNNLTNVNSYKY
SGLANSKAVGIQFAKDPKDRPCAAITLKSSKNGNKPKKSVGRSLLKKTHP
SVSQAIMKQTGGTNYRPDLQHAALVRWSKVHRALRVQKGERKPMTVNAGR
KNLKATA
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mRNA from alignment at Scaffold_417:60124..65123-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft574_6a-0001 ID=EsuBft574_6a-0001|Name=EsuBft574_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5000bp|location=Sequence derived from alignment at Scaffold_417:60124..65123- (Ectocarpus subulatus male Bft15b)
CGTCGTCAGATTGGCGGAAGTGTGTGGGTTGTGGTTTAGCGAGCGTCATA
GCAGCAGCGACGGGGAGCAGCAGCGCGGCAGACACACCCCAGCAGCAGCA
ACCATGACCAACGTGTCGAACGAGCTGGTGTGGTCCCTGGTGCGGAGGAA
CACCTGCTTCCTCTACAAGAGGAATGGCCAGACCAAGAGGTGAGCAAAGC
TACGACGTACGCTACGAGACCAGTGATGGGTGCCGATGTTGCGTGGGGAA
GCCGTCTCGTGGCCAGCAGGGAAGGGATGCTTGACCAGAGTGGAGCTCTG
GTGCGGGAGGGTAGTTGCTCCCAGGGAGAGATGAGCTAGGCTCAGAGCTG
GGTCGTCGAGATGCGTGCCGAGGACAGCAGTGCCTCCCTCAGAGTTCTAG
TGTTCGCTGCCCTCCATTTGCACCGACCGCCGCATATTTAGGACACAGCG
ACCTTGTAAATAGGCTGGTGCCGCGGAGAGCGGAGCTTCGACGCCGGTGT
TTTTCCTCGTTTCTGCTAGGCAACGTGATGCCTTCCGTCTCCAGTACAGT
TATTCCTTGATGTGTAGATCGGGTTTGCTTATACTCGCTTTGTCGCGCTG
CTGTGTGCTGTGTGCGTTGAGTCGAGCCACTCCGTGTACAGCGGTACGCG
TGTCCCCATCTGTTGGATCTACGTTGGGCAAGTGTTGACTGGGTGTCCGG
CAGTAGTGTGTGCCTGCTGTGTCTCGTTTTGTGACCCAGGCCCCCAACTA
CTCCTCCCAATGGCAGTGATGCTGACCGAAAACAGCCACTCTCCGATGAA
GCCGGCAAACGATACGTATGTCCCAGACCCCCGACCGAATGTTGATGTTT
CACTTACTGAGACCCAGCAGAGGCGTTTACGTGTACTCACGAGTACGGAG
TTGATGGTACACCGATAGCAATAGACTGTATCCTGCCATTCCGAGCACCT
CTGTGCGGTAACCATCCCGGTAGATTCCACCTTGTGGCATGATTACTATC
GCTCATGTCTGTTCGGCGAAACCAAATATTCTTATTCTGGAGATATTGAA
GAGCTCACCCTTTGTTTTGCTTTTGTTGTACTTGTAGCACTTCGAAGTAC
CATTTTTTGAGCGTGCTGCAAGTACCATTTTTTGAGCGTGCTGATGCTGA
AGAACTCCGTGGGCAACAAGGGAAACAGCTGCTTGCCTCGAATGCTCGCA
ACATTCAACACCACAGCACTACAGTAGATACATCCTGCACTGCGCAAAAC
CGGCGCTCTATTGTTGGAAACCGAACTTGATATATCTCTGTTTCTGGGGG
ATGCAATGCCCGATAACGGACATGGACTGCTTGAAAAATAACGCAATTGG
GAAGCCGTAGGACACCTGATCTCGCAACATCCAACACCACAGCACTACAG
TAGATACATCCTGCACTGCGCAAGAAGCGGCGCTCTATTGTTGGAAACCG
AACTTGATATATCTCTGTTTCTGGGGGATGCAATGCCCGATAACGGACAT
GAACTGCTTGAAAAATAACGCAATTGGGAAGCTGTAGGACACCTGATCAG
CACGCAGCAAGCCTTGGTTAATTTTTGTCAAAAGATTTCTACGTGGCGTC
GGTATTGACTCGAGAGGGGAAGGGAAGTGATGACGCCCTGGCACACGCGA
CTTATTTTGGTGGCGCGTTTGTCGCGGGTACTTGAACCCACTCGCGAGCA
CGCGTCCGCCTTGCTGAAACGCCGCACGCCTTCGCTCTTGAGCGACGGCC
GCAGTCTGATCCTTTTCTCTCACTTTGTCGTTCTCTCCCGGTTCCCGTCT
TGTGGCCCATCTCATAGACCCAGGACTTGTCTTCATATACCCATCCTCTG
CTGCATTTGGCACCTTACGCGCTCTATTTATTCTGCGGTGCCCCTTTGAT
TTTGCGTGCTGACGCACATAAAAATCCCGAGGTCTCTCCTTCTCACTCGA
GAAATTCCCTGTTTGTTTCGACTGTGACAAAACGACGATGATTACAAACA
GGTCCGGCAAAGTCGTTCTGACGGCCGAGCCCAACAACTTGACGAACGTC
AACTCGTACAAGTACTCCGGCCTCGCGAACAGCAAGGCCGTCGGCATCCA
GTTCGCCAAGGACCCCAAGGACCGCCCGTGCGCCGCCATCACCCTGAAGG
TGCGTGTGCCTTAGTCCCTCCTCTCGTCTTGTACTCCACGAAAAGTTCTG
CTGAGCGTTAGGGCACACCAATGATGGAGTCTAAGTTTTGGCGCGCTGTG
GGGGCACTACTGCGTGTCATGGACGAATGGTCGGGGCTCGCGTGTCCCTT
TTTGTACGGTGCATGCTACACACGGGAGCAATGCACATGTGGATGGTTCA
GGTTTAGACTTAGCCCTCGCATAGCCCTGATGGTGCAGCGTGTGCTACAT
CACACCAGACGGAGAACACAAACAAACGATGAGGGTTGAGATTAGTTGCC
TATTCGCTTTATGAAGTTCACAGTAAGCATGGTCAAGCAGTCCCAGCAAG
CAAAACACATTGATGGTGTTCATTCCAAAGTGTGCGGGGACAGCGCAGTA
GAGCACGCAACTTGAATCTTTCCCGTGTTGCCTCCAAGGCATACCGTTTT
ATCATGAAAGGACAGCAGTGTTGAGTCGGACTCTCCCATGGTCGTTCTAC
AGGCAATGCACACCTTACCGTTGAATCCACAGAAGTATGCACATCCGCCT
TGTTTCGAAAGAAAAGCATGTGACCCTATGGTCCATCGTCTACATCATTT
GGTTGCCATTTGTCTTAGTTTTTTTCGTCGGTGAACAATGCAGTACATGC
GTTTTCATGCGCACCAGAGCCGGGACGCGAACGCGTGGTTTACACAGGCC
GCGGCATCGCTCCCTCGCCTTTTAGCGCGCTCAGAGAGTCTCTGTCGTTC
CGCAGATCTTCCCTACTCCGGTGGTGGCAGATCGGGCTCGGCAAAGCTCT
CATTTCATGAGGCACAAGCGCGGCGGAAAGCTCTAGATCAAACCCCAGAC
TTGCACGCGTCGAGAACGCTGTCGGGTTCGTCCTGACGCGGATCCGCACC
GCACTGGCTCTATATTCCCATCCTTGGGCGATGCTGTCTCCCTGTAAAGT
TCGATAGTCCGCCTTTTTCGAGAGGAGGGCTTGAGAACTGCTTGGCGGGG
GGCAGCGATTACGTGTCGGGGAATAACCATAGAGCACACATTCGCGTTTC
TTTCGTCCTTTTTTTCTTTTCTTGTTTCGAACGACGCTTATTCATGCACC
CTCCCGCAGAAAAGCCTACTGTTGTGCGTGCACACGCGTCACGGCCGACG
TACGATGACGCACCGTCCCATGCTGTGTTGTCCCCGGTGTTGCTCATCTG
TCATTCGTCTGAAGAGCTCTGCTCCAACGATCTTGTCCTTTTTTTGTGAA
CCATGGTTGGCTGACCGCACCACTCTTGTCATTGTTTGAACGTTGGCACG
CCGGCAATCTCACCCTTTTCTTCCGCAAGCTGGACTGCAGACAATTTTGC
ATGTACACTTGTGCTGTACTCGGTGTTTTCCACCACGACATCGGGTGGCA
CCGTGAACCGACTAAAAACGCTGTCTAGCTTTTGGCGGTAAGATCATTGT
TTCCACGGCGCGTCCCATGTGATGAGGGATTTTAGCACATGCCGCCACAT
GATGCGTCATTTTTAATCGAAAAGCATGTCCTCGCAGGGTCATTGTGCCA
TCCTTTTCACCAACCCCCCCCCCCCCGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNCCCCCCCCCCCGGTGCCGTCCCTTTCCTCCCT
CTTGATGCTCTTTGCGCATCATGACACGTGATGATCACTTCCCATGCATT
ACACATGACCCTTAGTCGTCCAAGAATGGCAACAAGCCCAAGAAGTCAGT
CGGCAGATCCTTGCTGAAGAAGACCCACCCAAGCGTGTCCCAGGCCATCA
TGAAGCAGGTACGCGTGCTGTAGTGGGAGTAGCGATGGGCATAAAACGTC
CCACAGCTCCGCAGCAAACCACAAAGCGTAGCTGCAACATTTTCCCGGAT
AAGCTTTCGCTTTCGCTTCCGTTTCCCTCGTACCCGACGTCACAACGCTG
CGAAATTCTTTTGCCGGTGCCGCTGGTTCGACCGCTCTTTTTTAACGCCC
ACGTACCGCCGCCTGCCGCCTGTCCCTTCCAGACCGGCGGCACCAACTAC
CGCCCTGACCTCCAGCACGCGGCGCTTGTCCGCTGGTCGAAGGTGCACCG
TGCGCTCCGCGTACAGAAGGGCGAGAGGAAGCCCATGACCGTGAACGCCG
GCCGCAAGAACCTCAAGGCCACCGCCTAAGTTTCCGTTCGCCACCGCTGG
TGCTGCTGATGATGCTGGTGCCACTATAATACCCTGCCACTGACTGGCTA
GCGAGTAAGAACATCATCGCCGGCTTCGTCGGTGCTCTTCTTTCTGGCCC
GCGAAGCTTTTCGAACGGCGTCGGACATGGGAATCGGTCACGTCGTGTCT
AGTGTCTAGTGGAAAGCTTTGCACTCTGTGCTTCGATGACTTGGCTTGCC
AAGGCGCTTGAAAAGTTGTTTAGTGCGGTCGATGGCGAAGAGATCTTTTA
GCCAGTCTGGATTTACGCTTTCATCCGTATGAGTGTGGTGGTGATGTCTC
TCGGTGGCTGAATAACGAACCCGTTGCTGCGAATTTCAATCTTTCGAAGC
GCTCTCTTAAATCTATGTGCGCTCTGTATGAGACGGATGTACCCGTGGTG
AAGCCAGTCATTGCTGGTCCCCACGCCCACGGCTGGACCGAGCACCCACG
GTTGTGGGGTGCTGCGCACAACGAACCAGAACAAGCAGGCGTTTCCGTCC
GATGTTTCGCTCTCAACCGGAGTCGACTTGACTCCAGTCTCTGCAACCCC
ATTCTCCTGTGATGGGACGAGGCAGGCCGAGCACATGCGTTGCCTTTAAC
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Coding sequence (CDS) from alignment at Scaffold_417:60124..65123-

>EsuBft574_6a-0001 ID=EsuBft574_6a-0001|Name=EsuBft574_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=474bp|location=Sequence derived from alignment at Scaffold_417:60124..65123- (Ectocarpus subulatus male Bft15b)
ATGACCAACGTGTCGAACGAGCTGGTGTGGTCCCTGGTGCGGAGGAACAC
CTGCTTCCTCTACAAGAGGAATGGCCAGACCAAGAGGTCCGGCAAAGTCG
TTCTGACGGCCGAGCCCAACAACTTGACGAACGTCAACTCGTACAAGTAC
TCCGGCCTCGCGAACAGCAAGGCCGTCGGCATCCAGTTCGCCAAGGACCC
CAAGGACCGCCCGTGCGCCGCCATCACCCTGAAGTCGTCCAAGAATGGCA
ACAAGCCCAAGAAGTCAGTCGGCAGATCCTTGCTGAAGAAGACCCACCCA
AGCGTGTCCCAGGCCATCATGAAGCAGACCGGCGGCACCAACTACCGCCC
TGACCTCCAGCACGCGGCGCTTGTCCGCTGGTCGAAGGTGCACCGTGCGC
TCCGCGTACAGAAGGGCGAGAGGAAGCCCATGACCGTGAACGCCGGCCGC
AAGAACCTCAAGGCCACCGCCTAA
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