EsuBft574_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft574_4a-0001
Unique Name	EsuBft574_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:91630..98512 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft574_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	41
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft574_4a	EsuBft574_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 91630..98512 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_4a-0001-exon	agat-exon-88040	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 91630..91766 +
EsuBft574_4a-0001-exon	agat-exon-88039	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 98003..98009 +
EsuBft574_4a-0001-exon	EsuBft574_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 98240..98512 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_4a-0001-cds	EsuBft574_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 91630..91766 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_4a-0001	EsuBft574_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 91630..98512 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:91630..98512+
coding sequence from alignment at Scaffold_417:91630..98512+

spliced messenger RNA

>EsuBft574_4a-0001 ID=EsuBft574_4a-0001|Name=EsuBft574_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=417bp|location=Sequence derived from alignment at Scaffold_417:91630..98512+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAACCCATCTCTCCAAACGAAAACTCCAGATATCCTCACCCAGGC
GGCTAACATGGACATGCAAATGTCCATCCAGCATGACCGCATCAAGAGCG
CCAAGGTCGAGCAGTTGCAGAGGAAGAAGGAGAAACTGGCTGAGGAGAGG
GAGAGGAACGCCCAGCGAAAGATCAACGAGGTGGACGCTGAGCTTCTGGC
CCTCACCAACGTCAACGTCCACAGAAGCTTCGCGATCTCCGACTCGGTCA
GCGCTACCAACCATGACCGCCGCTACACTGGGACCGCTGACCCCCAGATG
GAATCGGCGTACGCTGCACCCCCCCCAGGGTCGACTGTCACCACCACAAG
CCGTTCGGCCGCCCCGCCGAACCATCACGACTTTGTGGGTGGTGTTACAC
AGGTCCATATCCAGTAG

protein sequence of EsuBft574_4a-0001

>EsuBft574_4 ID=EsuBft574_4|Name=EsuBft574_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=138bp
MPNPSLQTKTPDILTQAANMDMQMSIQHDRIKSAKVEQLQRKKEKLAEER
ERNAQRKINEVDAELLALTNVNVHRSFAISDSVSATNHDRRYTGTADPQM
ESAYAAPPPGSTVTTTSRSAAPPNHHDFVGGVTQVHIQ

mRNA from alignment at Scaffold_417:91630..98512+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft574_4a-0001 ID=EsuBft574_4a-0001|Name=EsuBft574_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6883bp|location=Sequence derived from alignment at Scaffold_417:91630..98512+ (Ectocarpus subulatus male Bft15b)
ATGCCCAACCCATCTCTCCAAACGAAAACTCCAGATATCCTCACCCAGGC
GGCTAACATGGACATGCAAATGTCCATCCAGCATGACCGCATCAAGAGCG
CCAAGGTCGAGCAGTTGCAGAGGAAGAAGGAGAAACTGTAGAAGGACGAG
GACAAGTTCCGGGGGCTCGCAAACGTGGCGTGGATTGCGTTCCCGGTGAC
GGCGATCGTGTTCGTTTGCACCTGCTGTCAGTGCTGCCTTCCCGAGTGAA
TGAAGGTGCGCAAGGGCGGTAGGATGTGTTTGCGGCCTACGCCACTTATT
TATCGGGTGAGACTGTTTTGGTGATGTATTAACTTCACGGGAGGTAGACG
ACCATCCTTCACACGGACGAAAGAGGGAGTGCTCAAAGAGCGGCTCCCAC
AGCAAGGAGGGGCCCCGTGAATCATCGCGGTGCCCCCTATCAAACGGTTA
TCTTACCAGTCTGCGTGACACAAAATCATCCAGCACATGTATCCAACAGC
AATGTTCGCAGACTCACGAACACCCTCCCTGGTTCTTCACGCAAGTGACT
AACCATCAATTGGGCAAGAACGCCCCAGGATACATCAGAAAATACCAACA
TGGTAACATATGGAGGGGAAACCCGGCGTCCGGGCAAAACCCCTCNNNNN
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CCACTTATTTATCGGGTGAGACTGTTTTGGTGATGTATTAACTTCACGGG
AGGTAGACGACCGTCCTTCACACGGACGAAAGAGGGAGTGCTCAAAGAGC
GGCTCCCACAGCAAGGAGGGGCCCCGTGAATCATCGCGGTGCCCCCTATC
AAACGGTTATCTTACCAGTCTGCGTGACACAAAATCATCCAGCACATCAT
GTATCCAACATCAATGTTCGCAGACTCACGAACAGGATGTTGGTTGTATT
GTGGACCAAAGGCTGGCAGGATACGCGAGTACGGATCCAACCGTGCTTGA
GTGAAGGTCCAAACTTGCTTCATTTTTAGCTTCGAACTCGAAACCACCTG
CGGCAGAACGTCTTGTGGCTTGTGGCGTGCCTCAAGTTCGGGTGTTCACT
CTCGACCAGCATCTACGACGTCGTGGTCATGCCCTTGTCGATCGTTGTGT
TCAGCTCCTTTGCTGTTGTTCATGTATGGTCCACGTGTTGACGAAATCAT
CCCGTTATCCGTTCCGTGGTCACTTTGGTAATCCCAAGATAGATGTGTCC
AACTCTCATTCTGAAGGAACTACTGCTCAGTCTACCGCACGGTCTTCGTC
GTGCTGACCTAGTATATTTTTGTGTTGCCAAGTGGTGCATGCCGAAAAAA
GAGCGGAGACATGGGTTGCCCAGGGCTGAGGTAGATCCGTACCGACAAGT
ATCAACCTGTTCGTCATGGTATCTGTATCTATCATCGGGAGAAGAGTCAT
TATCGCAGCTGTAACGCCTTGAAATATGGAAGTAACCCTTCGTCGATCCG
GCTGGTTGTGTGTGAATATGGGTTGTGCGTGAATATTTCATTTCACCCCC
TCACCTAACACTGTTGTACTTGTTGGTGCCTACTGTTCGCATATTGCTCG
TCTTTGGCAGGAGAGGGAGAGGAACGCCCAGCGAAAGATCAACGAGGTGG
ACGCTGAGCTTCTGGCCCTCACCAACGTCAACGTCCACAGAAGCTTCGCG
ATCTCCGACTCGGTCAGCGCTACCAACCATGACCGCCGCTACACTGGGAC
CGCTGACCCCCAGATGGAATCGGCGTACGCTGCACCCCCCCCAGGGTCGA
CTGTCACCACCACAAGCCGTTCGGCCGCCCCGCCGAACCATCACGACTTT
GTGGGTGGTGTTACACAGGTCCATATCCAGTAG

Coding sequence (CDS) from alignment at Scaffold_417:91630..98512+

>EsuBft574_4a-0001 ID=EsuBft574_4a-0001|Name=EsuBft574_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=417bp|location=Sequence derived from alignment at Scaffold_417:91630..98512+ (Ectocarpus subulatus male Bft15b)
ATGCCCAACCCATCTCTCCAAACGAAAACTCCAGATATCCTCACCCAGGC
GGCTAACATGGACATGCAAATGTCCATCCAGCATGACCGCATCAAGAGCG
CCAAGGTCGAGCAGTTGCAGAGGAAGAAGGAGAAACTGGCTGAGGAGAGG
GAGAGGAACGCCCAGCGAAAGATCAACGAGGTGGACGCTGAGCTTCTGGC
CCTCACCAACGTCAACGTCCACAGAAGCTTCGCGATCTCCGACTCGGTCA
GCGCTACCAACCATGACCGCCGCTACACTGGGACCGCTGACCCCCAGATG
GAATCGGCGTACGCTGCACCCCCCCCAGGGTCGACTGTCACCACCACAAG
CCGTTCGGCCGCCCCGCCGAACCATCACGACTTTGTGGGTGGTGTTACAC
AGGTCCATATCCAGTAG