EsuBft574_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft574_3a-0001
Unique Name	EsuBft574_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:102070..103905 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_003372-tr
ProteomeId	EsuBft574_3
Protein domains	IPR001584
Protein domains	IPR000477
Protein domains	IPR012337
Protein domains	Coil
Protein domains	G3DSA
Protein domains	PTHR24559
Protein domains	SSF56672
Owner	apollo_admin@sb-roscoff.fr
Note	retrovirus-related pol polyprotein from transposon os:drosophila melanogaster gn:pol pe:3 sv:1 [Automatic annotation]
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	1836
Hectar predicted targeting category	other localisation
Evalue	7.9e-84
EggNOG OGs	COG2801@1\|root,KOG0017@2759\|Eukaryota,38F42@33154\|Opisthokonta,3BA5H@33208\|Metazoa,3CWAK@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	K02A2.6-like
COG category	E

Cross References

External references for this mRNA


Database	Accession
GO	0003676
GO	0015074

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft574_3a	EsuBft574_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 102070..103905 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_3a-0001-exon	EsuBft574_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 102070..103905 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_3a-0001-cds	EsuBft574_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 102070..103905 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft574_3a-0001	EsuBft574_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 102070..103905 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:102070..103905-
coding sequence from alignment at Scaffold_417:102070..103905-

spliced messenger RNA

>EsuBft574_3a-0001 ID=EsuBft574_3a-0001|Name=EsuBft574_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_417:102070..103905- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATACCAGCAGAAGAGCAAGATAAGACGGCTTTTGTAACACACAA
AGGGAAATGGGTCTTTAAACGCCTCCCCTTCGGAATTGCGAATGCTCCCT
TCTTGTTTGCCCGTATGATGTCCCTAGCCTTTTCTCACTTTGGACCACGC
AGTGGACTTCTAGTGTACATGGACGACATCATCTGCTGCAGTTCTACTTG
GGAGAGCCATCTAACTTTATTAGAAAGCATGCTCCAGGCCCTCCAAGCTG
CCGGTCTCACCCTGAAACCCACTAAAGTACAATTTGGACCAAGAGAAGTC
AAATACTTGGGACACATACTGTCTGAGAAAGGGATTCGCATAGGTGAAGA
TCGCATTAAAGCCATTATTGACTTACCTACACCCAAAACCATTAAAGAAC
TTCGTTCGGCTTTGGGCATGGTCAATTTTGTACGTAAGTATATACCCGAC
CTTTCTACGGTAATCGCGCCGCTAGTCGAACTCACGCAGAAAGAGCATGT
GAAATCAATCGCAAAACGATGGAATCAGGAACACGATAAGGCGTTTGCAG
AGGTAAAACGTTTACTCAGCGAAGCCCCCGTACTATGTTTCCCTGACTTT
ACCAGATCTTTCGTGGTTCACGTTGATGCCAGTGAAGTTGGTGCAGGAGC
ATTCCTAGCCCAAAAGAATGGTGACGACCTGAATATTATTGCATACTTCA
GCCAGCGATTTAACAAAGCTCAACGCCACTACTCCCCCACGATGAAAGAA
TGTTACGGAGTTGTTTTGAGTTTACAACACTGGAGACCCTACCTGTGGGG
TAAACATTTTGAAGTCGTGACGGATCATGCGGCGTTAAGATATTTGTACA
CGATGCAAGACACGTCTAATATGCTGACTAGGTGGGCGATTGCTTTGCAG
TCTTTTGACTTTACCGTGCGACACAAGCCGGGAAGGTTACACGTAGTCCC
AGACACACTCTCTCGGTTGTTTGCGTTTGATCACCAACAACAGTTGGAAA
CCCCGCAACTAGCACCGATTTGCAGAAATGTGCCGCAGGACCCTGCATTA
CAATCTAGTGTCCCACAACGTCCGTACCAAGTGTCTGCAGATCGCCTGGA
TAACCTGCAACCAGTCCAAAGCGATCGCGAATTATTCGCTGAGAAATCAG
TCTATGTTAGCGCGACCAATGTCTTTGAGACGATTAATCACGACGTTTTG
CGTGAAAAGCAAGCTCTCGAGTACGGCACATATATCGACTATCTTACGAA
AGATGACGCCCGATTACCTGATAACGAGACAACAACTTCCATGTCGTACT
ACTTTGTGCGCGACGAGTTGCTGCATAAATCGTATCTATCAGGTTACCTC
CGGAAACGCAGTACGTTTAGTGACCAATTAGTATTACCACAAGCTCTAAC
CGGGTTGGTGATGCATGCATATCATGACCACGTATTGTCCGGAGGCCACT
TAGCGTCTAGACCAACTTATGAGAAGATCCGCCAAAAATATTGGTGGCCA
ACCATGAATCGAGACGTCCGTACTTGGTGTCAAGAATGTCAAGCCTGTCA
ACGTCGAAAAACGGCCCACAACCGAAACAAGCTCCCAACGGGACATGTAC
CTGTACAAAGACCGTTTGAACGTATTTCGGTTGATTTAGTCGAATATAAC
GTAGAATCGGTTTCAACCGCCTGGGTACGATGCAAATATGTTCTCTCTAC
GATGGACCATCTAACCCGATTCACCGTGTTGACTCCGATTCCCAATAAAT
CAGCAGCCACTGTTGCGCAGGCCATTATCGATCGCATCATAGGCATATTT
GGAGCGCCTGAAATGTTGCATTCCGGGCGAGCTTAG

protein sequence of EsuBft574_3a-0001

>EsuBft574_3 ID=EsuBft574_3|Name=EsuBft574_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=611bp
MEIPAEEQDKTAFVTHKGKWVFKRLPFGIANAPFLFARMMSLAFSHFGPR
SGLLVYMDDIICCSSTWESHLTLLESMLQALQAAGLTLKPTKVQFGPREV
KYLGHILSEKGIRIGEDRIKAIIDLPTPKTIKELRSALGMVNFVRKYIPD
LSTVIAPLVELTQKEHVKSIAKRWNQEHDKAFAEVKRLLSEAPVLCFPDF
TRSFVVHVDASEVGAGAFLAQKNGDDLNIIAYFSQRFNKAQRHYSPTMKE
CYGVVLSLQHWRPYLWGKHFEVVTDHAALRYLYTMQDTSNMLTRWAIALQ
SFDFTVRHKPGRLHVVPDTLSRLFAFDHQQQLETPQLAPICRNVPQDPAL
QSSVPQRPYQVSADRLDNLQPVQSDRELFAEKSVYVSATNVFETINHDVL
REKQALEYGTYIDYLTKDDARLPDNETTTSMSYYFVRDELLHKSYLSGYL
RKRSTFSDQLVLPQALTGLVMHAYHDHVLSGGHLASRPTYEKIRQKYWWP
TMNRDVRTWCQECQACQRRKTAHNRNKLPTGHVPVQRPFERISVDLVEYN
VESVSTAWVRCKYVLSTMDHLTRFTVLTPIPNKSAATVAQAIIDRIIGIF
GAPEMLHSGRA

mRNA from alignment at Scaffold_417:102070..103905-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft574_3a-0001 ID=EsuBft574_3a-0001|Name=EsuBft574_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1836bp|location=Sequence derived from alignment at Scaffold_417:102070..103905- (Ectocarpus subulatus male Bft15b)
ATGGAAATACCAGCAGAAGAGCAAGATAAGACGGCTTTTGTAACACACAA
AGGGAAATGGGTCTTTAAACGCCTCCCCTTCGGAATTGCGAATGCTCCCT
TCTTGTTTGCCCGTATGATGTCCCTAGCCTTTTCTCACTTTGGACCACGC
AGTGGACTTCTAGTGTACATGGACGACATCATCTGCTGCAGTTCTACTTG
GGAGAGCCATCTAACTTTATTAGAAAGCATGCTCCAGGCCCTCCAAGCTG
CCGGTCTCACCCTGAAACCCACTAAAGTACAATTTGGACCAAGAGAAGTC
AAATACTTGGGACACATACTGTCTGAGAAAGGGATTCGCATAGGTGAAGA
TCGCATTAAAGCCATTATTGACTTACCTACACCCAAAACCATTAAAGAAC
TTCGTTCGGCTTTGGGCATGGTCAATTTTGTACGTAAGTATATACCCGAC
CTTTCTACGGTAATCGCGCCGCTAGTCGAACTCACGCAGAAAGAGCATGT
GAAATCAATCGCAAAACGATGGAATCAGGAACACGATAAGGCGTTTGCAG
AGGTAAAACGTTTACTCAGCGAAGCCCCCGTACTATGTTTCCCTGACTTT
ACCAGATCTTTCGTGGTTCACGTTGATGCCAGTGAAGTTGGTGCAGGAGC
ATTCCTAGCCCAAAAGAATGGTGACGACCTGAATATTATTGCATACTTCA
GCCAGCGATTTAACAAAGCTCAACGCCACTACTCCCCCACGATGAAAGAA
TGTTACGGAGTTGTTTTGAGTTTACAACACTGGAGACCCTACCTGTGGGG
TAAACATTTTGAAGTCGTGACGGATCATGCGGCGTTAAGATATTTGTACA
CGATGCAAGACACGTCTAATATGCTGACTAGGTGGGCGATTGCTTTGCAG
TCTTTTGACTTTACCGTGCGACACAAGCCGGGAAGGTTACACGTAGTCCC
AGACACACTCTCTCGGTTGTTTGCGTTTGATCACCAACAACAGTTGGAAA
CCCCGCAACTAGCACCGATTTGCAGAAATGTGCCGCAGGACCCTGCATTA
CAATCTAGTGTCCCACAACGTCCGTACCAAGTGTCTGCAGATCGCCTGGA
TAACCTGCAACCAGTCCAAAGCGATCGCGAATTATTCGCTGAGAAATCAG
TCTATGTTAGCGCGACCAATGTCTTTGAGACGATTAATCACGACGTTTTG
CGTGAAAAGCAAGCTCTCGAGTACGGCACATATATCGACTATCTTACGAA
AGATGACGCCCGATTACCTGATAACGAGACAACAACTTCCATGTCGTACT
ACTTTGTGCGCGACGAGTTGCTGCATAAATCGTATCTATCAGGTTACCTC
CGGAAACGCAGTACGTTTAGTGACCAATTAGTATTACCACAAGCTCTAAC
CGGGTTGGTGATGCATGCATATCATGACCACGTATTGTCCGGAGGCCACT
TAGCGTCTAGACCAACTTATGAGAAGATCCGCCAAAAATATTGGTGGCCA
ACCATGAATCGAGACGTCCGTACTTGGTGTCAAGAATGTCAAGCCTGTCA
ACGTCGAAAAACGGCCCACAACCGAAACAAGCTCCCAACGGGACATGTAC
CTGTACAAAGACCGTTTGAACGTATTTCGGTTGATTTAGTCGAATATAAC
GTAGAATCGGTTTCAACCGCCTGGGTACGATGCAAATATGTTCTCTCTAC
GATGGACCATCTAACCCGATTCACCGTGTTGACTCCGATTCCCAATAAAT
CAGCAGCCACTGTTGCGCAGGCCATTATCGATCGCATCATAGGCATATTT
GGAGCGCCTGAAATGTTGCATTCCGGGCGAGCTTAG

Coding sequence (CDS) from alignment at Scaffold_417:102070..103905-

>EsuBft574_3a-0001 ID=EsuBft574_3a-0001|Name=EsuBft574_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1836bp|location=Sequence derived from alignment at Scaffold_417:102070..103905- (Ectocarpus subulatus male Bft15b)
ATGGAAATACCAGCAGAAGAGCAAGATAAGACGGCTTTTGTAACACACAA
AGGGAAATGGGTCTTTAAACGCCTCCCCTTCGGAATTGCGAATGCTCCCT
TCTTGTTTGCCCGTATGATGTCCCTAGCCTTTTCTCACTTTGGACCACGC
AGTGGACTTCTAGTGTACATGGACGACATCATCTGCTGCAGTTCTACTTG
GGAGAGCCATCTAACTTTATTAGAAAGCATGCTCCAGGCCCTCCAAGCTG
CCGGTCTCACCCTGAAACCCACTAAAGTACAATTTGGACCAAGAGAAGTC
AAATACTTGGGACACATACTGTCTGAGAAAGGGATTCGCATAGGTGAAGA
TCGCATTAAAGCCATTATTGACTTACCTACACCCAAAACCATTAAAGAAC
TTCGTTCGGCTTTGGGCATGGTCAATTTTGTACGTAAGTATATACCCGAC
CTTTCTACGGTAATCGCGCCGCTAGTCGAACTCACGCAGAAAGAGCATGT
GAAATCAATCGCAAAACGATGGAATCAGGAACACGATAAGGCGTTTGCAG
AGGTAAAACGTTTACTCAGCGAAGCCCCCGTACTATGTTTCCCTGACTTT
ACCAGATCTTTCGTGGTTCACGTTGATGCCAGTGAAGTTGGTGCAGGAGC
ATTCCTAGCCCAAAAGAATGGTGACGACCTGAATATTATTGCATACTTCA
GCCAGCGATTTAACAAAGCTCAACGCCACTACTCCCCCACGATGAAAGAA
TGTTACGGAGTTGTTTTGAGTTTACAACACTGGAGACCCTACCTGTGGGG
TAAACATTTTGAAGTCGTGACGGATCATGCGGCGTTAAGATATTTGTACA
CGATGCAAGACACGTCTAATATGCTGACTAGGTGGGCGATTGCTTTGCAG
TCTTTTGACTTTACCGTGCGACACAAGCCGGGAAGGTTACACGTAGTCCC
AGACACACTCTCTCGGTTGTTTGCGTTTGATCACCAACAACAGTTGGAAA
CCCCGCAACTAGCACCGATTTGCAGAAATGTGCCGCAGGACCCTGCATTA
CAATCTAGTGTCCCACAACGTCCGTACCAAGTGTCTGCAGATCGCCTGGA
TAACCTGCAACCAGTCCAAAGCGATCGCGAATTATTCGCTGAGAAATCAG
TCTATGTTAGCGCGACCAATGTCTTTGAGACGATTAATCACGACGTTTTG
CGTGAAAAGCAAGCTCTCGAGTACGGCACATATATCGACTATCTTACGAA
AGATGACGCCCGATTACCTGATAACGAGACAACAACTTCCATGTCGTACT
ACTTTGTGCGCGACGAGTTGCTGCATAAATCGTATCTATCAGGTTACCTC
CGGAAACGCAGTACGTTTAGTGACCAATTAGTATTACCACAAGCTCTAAC
CGGGTTGGTGATGCATGCATATCATGACCACGTATTGTCCGGAGGCCACT
TAGCGTCTAGACCAACTTATGAGAAGATCCGCCAAAAATATTGGTGGCCA
ACCATGAATCGAGACGTCCGTACTTGGTGTCAAGAATGTCAAGCCTGTCA
ACGTCGAAAAACGGCCCACAACCGAAACAAGCTCCCAACGGGACATGTAC
CTGTACAAAGACCGTTTGAACGTATTTCGGTTGATTTAGTCGAATATAAC
GTAGAATCGGTTTCAACCGCCTGGGTACGATGCAAATATGTTCTCTCTAC
GATGGACCATCTAACCCGATTCACCGTGTTGACTCCGATTCCCAATAAAT
CAGCAGCCACTGTTGCGCAGGCCATTATCGATCGCATCATAGGCATATTT
GGAGCGCCTGAAATGTTGCATTCCGGGCGAGCTTAG