EsuBft574_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft574_2a-0001
Unique NameEsuBft574_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:104797..108030 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft574_2
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length223
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2aEsuBft574_2aEctocarpus subulatus male Bft15bgeneScaffold_417 104797..108030 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2a-0001-exonEsuBft574_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 104797..106312 -
EsuBft574_2a-0001-exonagat-exon-88038Ectocarpus subulatus male Bft15bexonScaffold_417 107309..108030 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2a-0001-exonagat-three_prime_utr-18611Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 104797..106027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2a-0001-cdsEsuBft574_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 106028..106312 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2a-0001-exonagat-five_prime_utr-11846Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 107921..108030 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_2a-0001EsuBft574_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 106028..107920 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft574_2a-0001 ID=EsuBft574_2a-0001|Name=EsuBft574_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2238bp|location=Sequence derived from alignment at Scaffold_417:104797..108030- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTCTGTCTCTGACAGGGACTAGTGTCCTCATTGGCGTCGACGAACAAGGC
ACGACTCTCGCCGTGATTGTGAACGTGTGCAAACGAGAAACATAAAAGAG
AAAAAAAAACATGGGCAACAAAGGCAAGTCCACCAGCGACCGCATCAAGC
GAGCGAGACAGCACGCCGCGGACGCCACGGGACTCGCGGAAAAGAAGCAG
CAGGAGATCGACCAACTACGGCGCCAGCTCGCCGCCTTTACCTCCAAGGC
GTCGCAAACCTCGGCTACTCCCCCTCAACGTGGCACACCCGCGAGGCGGA
CCCCGGCTCCCCGTCCAGGTCGGGAACAACAGCCCGACCAGGAGGAAAAA
GGGGACACGCCTGACGGGAGCAACGAGAACAGCGACGGCTCGGAGAACGG
CGACGACAACAACGGCGGCGACGACGGCGACGTTGACGGGGACGTCGACG
GCGCCGGCGGCGACAACACTCAGGGCAACAGCGATGGCTCGGAGGACGGC
GACGCGGATGAGCGTGATATGCACATCATGCGTCAGCTTCTCGAAGATTT
CCGGGAACAGCGACTCTCCCCTCAGGACCGCAAGGCCATGATGGAAGCTG
CTGGCGGCCAGTTCACCGAATTGATGCTGCAGCACCACACGGAGAAGTCC
AACCCGCCCGGATGGTTAGTGTCCCTCTTCCGCCCTACCCTCTCAGCGGC
CTCCGCGGAACAGGTCACTCAGCTGAAAAACACGGTGTCATCCAATACTG
CTATCATCAAAGATCTTCAGACGGAACTTTCCAAGCTGAAGTCAGCGGTG
AAGCAGCCCCCTAACCGTGCCTCCAGCCAGGGTTCGTACAGCAAGCGGGC
TCGCACCTCGGACAAATCGGCAACCACCCCTGCTTCCAACCAGAAGGGAG
GGGGGGATCAATGCCCCTATCCGGGATGCAAGTTCCGCCACACTATCGAC
AAGTGCGCCCTAAAGAAAAGTGACGAGTCCCGGGGCTTCAAGCGTGTAGC
AAACTGACGAGGCCCTTCACGGGAGCCCTCGCCCGCAGGGACACGGACTG
CTAGTACACCATTTGCTGATGAAACTCACTTAGCACATGTTGCCCGAGTA
AATTCAGCCCCGCGTGTACCCAACGGTAGAAATTCGAGGGAATCATTTGT
TCCTCGGGCTAAGGGAAGTGGTTTAAAATCCGTACGAGGATTATCTAGCA
GTGAGTCTGATACTCAAGTAGCAGCGTCTGCCCCGGTATCGTTCAAGAAT
CAGCCAAGTAGCAACGCAGGGAAGAATAGGCAAACCAAACGCACTCGTGC
GTCAGGACCTAGGTTAGCCCCGCAAGCCCNCTCCGCCGTTACCATAGTAG
TGAAAGCTGATGGCACTCCCAGATTCTGCGTTGACTATCGCTCTACGATC
AATAAAAATTTAATTCGAAAATCTTGGCCCATGCCAGATATCGAATCCCA
CATTGATACCGTTGGTGGTGCGAAATATATCAGTTTGCGACATTCAAAAC
GCGTATCATCAAATGGAAATACCAGCAGAAGAGCAAGATAAGACGGCTTT
TGTAACACACAAAGGGAAATGGGTCTTTAAACGCCTCCCCTTCGGAATTG
CGAATGCTCCCTTCTTGTTTGCCCGTATGATGTCCCTAGCCTTTTCTCAC
TTTGGACCACGCAGTGGACTTCTAGTGTACATGGACGACATCATCTGCTG
CAGTTCTACTTGGGAGAGCCATCTAACNTAGTGGATCTCAATATGCATCG
TTTCATACGTCTGCACTTAGTAAATATCCACAACACCCTAATGCGTTAAA
TTCGTCCTCCAAGAGAGTGCGAATTCCTGCCCGAGTTAGTAATTACCCTG
TGTCCGACCTTACTATCGACACAGCCGCTGATGTACCATGTATATCAGCA
TCCTTTATCAAATCGCACCCAAAACTGCAACATCTACCTCTGAACCCTGT
GCCGCCAGGTGCAATTCAGTTGAACAGTGCAGATGGGTCCGCATTAGAAA
TCCTAGGTTACATTCGTTTCAACCTTACACTGGGAGATATCACTTTACCA
GTGGAGGCCCTCTGGTGTTACCAAACCTAGGTAGGTCCGGATAAAATGTT
GCTCGATAATAGCATAATGAATGCCTTTGGCGCCGTACTAGACTGGTGCG
GCGAGCAACTTTCGTTTAAAAATTCCACAAGGAAAATTCCGGCAAAACAC
CGACGAACGAATAGTCAAGCAGGCCCAAATGATAGTGC
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protein sequence of EsuBft574_2a-0001

>EsuBft574_2 ID=EsuBft574_2|Name=EsuBft574_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=298bp
MGNKGKSTSDRIKRARQHAADATGLAEKKQQEIDQLRRQLAAFTSKASQT
SATPPQRGTPARRTPAPRPGREQQPDQEEKGDTPDGSNENSDGSENGDDN
NGGDDGDVDGDVDGAGGDNTQGNSDGSEDGDADERDMHIMRQLLEDFREQ
RLSPQDRKAMMEAAGGQFTELMLQHHTEKSNPPGWLVSLFRPTLSAASAE
QVTQLKNTVSSNTAIIKDLQTELSKLKSAVKQPPNRASSQGSYSKRARTS
DKSATTPASNQKGGGDQCPYPGCKFRHTIDKCALKKSDESRGFKRVAN
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mRNA from alignment at Scaffold_417:104797..108030-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft574_2a-0001 ID=EsuBft574_2a-0001|Name=EsuBft574_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3234bp|location=Sequence derived from alignment at Scaffold_417:104797..108030- (Ectocarpus subulatus male Bft15b)
CTCTGTCTCTGACAGGGACTAGTGTCCTCATTGGCGTCGACGAACAAGGC
ACGACTCTCGCCGTGATTGTGAACGTGTGCAAACGAGAAACATAAAAGAG
AAAAAAAAACATGGGCAACAAAGGCAAGTCCACCAGCGACCGCATCAAGC
GAGCGAGACAGCACGCCGCGGACGCCACGGGACTCGCGGAAAAGAAGCAG
CAGGAGATCGACCAACTACGGCGCCAGCTCGCCGCCTTTACCTCCAAGGC
GTCGCAAACCTCGGCTACTCCCCCTCAACGTGGCACACCCGCGAGGCGGA
CCCCGGCTCCCCGTCCAGGTCGGGAACAACAGCCCGACCAGGAGGAAAAA
GGGGACACGCCTGACGGGAGCAACGAGAACAGCGACGGCTCGGAGAACGG
CGACGACAACAACGGCGGCGACGACGGCGACGTTGACGGGGACGTCGACG
GCGCCGGCGGCGACAACACTCAGGGCAACAGCGATGGCTCGGAGGACGGC
GACGCGGATGAGCGTGATATGCACATCATGCGTCAGCTTCTCGAAGATTT
CCGGGAACAGCGACTCTCCCCTCAGGACCGCAAGGCCATGATGGAAGCTG
CTGGCGGCCAGTTCACCGAATTGATGCTGCAGCACCACACGGAGAAGTCC
AACCCGCCCGGATGGTTAGTGTCCCTCTTCCGCCCTACCCTCTCAGCGGC
CTCCGCGGAACAGGTCACTCAGGTGAACAACCCTTGTACAGCACGTAGCA
ATCCAATTCAGCAAAATGATCGCTCACCGTCGATTTTTCGCCGAAATGAC
TTGCCCGCTGAAACCCAACGTTCACCTGTGAACCCTCGCCATCTAGCTCC
CGAGTTTGCATCGGCTCCACGTAGCGAAGACAGCACACACAGGCCTAGCA
ACCCTGTAGCGCCATCTACGCCCCCGCTTGCGACTTTCTCTATGCCTCAA
GGCACCACCACCCCGATGCCTCAAGGCACCCCCATTACTACAATCACATC
TGGCCCGAAATTCCAATTTCGCCAGAACGATCTACCGAAAGAAATCGTTT
TTTCCGGAAGACCTGGTGAGCAAGATGTGGTAGAAATACTAACTCGATAC
AGAGCGCGTGTGAAACTAGCCTCAGTTGCGGCCGACAACCCACCTGAATC
CGTAGTGGACCAAAGAGCGATCCAGTTTCTCCCGTTCGTACTCCGAGACG
CAGCCTACGACAGCCTCATTCAGCTAGTTGAGGGCACTCTCGAATGGCGA
TCAGAGAACAGGTTGACTGCGCTTCGGAACGCCGGACACAGTGTTAGGCC
AAGAGCACCTGCTACTTGGGAAGAGTACTGTCACGCTTTTACTTTTCTTT
TTTCCGCCCCCAACCGCCTCTCTGTGTTGGCTAGGGAAATTGCTACCATC
AAGCAATCAGAAGATCAGACAGTAGACTCGTACTCTCTCAAAGTCACTCA
AGCCCGCACACGTCTTCTAGCGGAAGCTGCGCGCTCCGCCCCCTCTCACC
TCAGCCCCCACGAACATGCATGGGATGTTTTCATGACAGCGACGTTTGAG
AACGGCCTTTTGCCAAGTATTAGGCTAGAGAGTATCCGAGAGGACCCCCC
AAACACATTCCAGGAAGCACGCATTCGCGCTAAGAAACACGAGGCCAATA
ACCTTAGAGGCGTAACCTCATCACAACCCGCTACCGTATCTTCTGTCGCG
GACTCCGACCCTCCGCAGCTGAAAAACACGGTGTCATCCAATACTGCTAT
CATCAAAGATCTTCAGACGGAACTTTCCAAGCTGAAGTCAGCGGTGAAGC
AGCCCCCTAACCGTGCCTCCAGCCAGGGTTCGTACAGCAAGCGGGCTCGC
ACCTCGGACAAATCGGCAACCACCCCTGCTTCCAACCAGAAGGGAGGGGG
GGATCAATGCCCCTATCCGGGATGCAAGTTCCGCCACACTATCGACAAGT
GCGCCCTAAAGAAAAGTGACGAGTCCCGGGGCTTCAAGCGTGTAGCAAAC
TGACGAGGCCCTTCACGGGAGCCCTCGCCCGCAGGGACACGGACTGCTAG
TACACCATTTGCTGATGAAACTCACTTAGCACATGTTGCCCGAGTAAATT
CAGCCCCGCGTGTACCCAACGGTAGAAATTCGAGGGAATCATTTGTTCCT
CGGGCTAAGGGAAGTGGTTTAAAATCCGTACGAGGATTATCTAGCAGTGA
GTCTGATACTCAAGTAGCAGCGTCTGCCCCGGTATCGTTCAAGAATCAGC
CAAGTAGCAACGCAGGGAAGAATAGGCAAACCAAACGCACTCGTGCGTCA
GGACCTAGGTTAGCCCCGCAAGCCCNCTCCGCCGTTACCATAGTAGTGAA
AGCTGATGGCACTCCCAGATTCTGCGTTGACTATCGCTCTACGATCAATA
AAAATTTAATTCGAAAATCTTGGCCCATGCCAGATATCGAATCCCACATT
GATACCGTTGGTGGTGCGAAATATATCAGTTTGCGACATTCAAAACGCGT
ATCATCAAATGGAAATACCAGCAGAAGAGCAAGATAAGACGGCTTTTGTA
ACACACAAAGGGAAATGGGTCTTTAAACGCCTCCCCTTCGGAATTGCGAA
TGCTCCCTTCTTGTTTGCCCGTATGATGTCCCTAGCCTTTTCTCACTTTG
GACCACGCAGTGGACTTCTAGTGTACATGGACGACATCATCTGCTGCAGT
TCTACTTGGGAGAGCCATCTAACNTAGTGGATCTCAATATGCATCGTTTC
ATACGTCTGCACTTAGTAAATATCCACAACACCCTAATGCGTTAAATTCG
TCCTCCAAGAGAGTGCGAATTCCTGCCCGAGTTAGTAATTACCCTGTGTC
CGACCTTACTATCGACACAGCCGCTGATGTACCATGTATATCAGCATCCT
TTATCAAATCGCACCCAAAACTGCAACATCTACCTCTGAACCCTGTGCCG
CCAGGTGCAATTCAGTTGAACAGTGCAGATGGGTCCGCATTAGAAATCCT
AGGTTACATTCGTTTCAACCTTACACTGGGAGATATCACTTTACCAGTGG
AGGCCCTCTGGTGTTACCAAACCTAGGTAGGTCCGGATAAAATGTTGCTC
GATAATAGCATAATGAATGCCTTTGGCGCCGTACTAGACTGGTGCGGCGA
GCAACTTTCGTTTAAAAATTCCACAAGGAAAATTCCGGCAAAACACCGAC
GAACGAATAGTCAAGCAGGCCCAAATGATAGTGC
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Coding sequence (CDS) from alignment at Scaffold_417:104797..108030-

>EsuBft574_2a-0001 ID=EsuBft574_2a-0001|Name=EsuBft574_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=897bp|location=Sequence derived from alignment at Scaffold_417:104797..108030- (Ectocarpus subulatus male Bft15b)
ATGGGCAACAAAGGCAAGTCCACCAGCGACCGCATCAAGCGAGCGAGACA
GCACGCCGCGGACGCCACGGGACTCGCGGAAAAGAAGCAGCAGGAGATCG
ACCAACTACGGCGCCAGCTCGCCGCCTTTACCTCCAAGGCGTCGCAAACC
TCGGCTACTCCCCCTCAACGTGGCACACCCGCGAGGCGGACCCCGGCTCC
CCGTCCAGGTCGGGAACAACAGCCCGACCAGGAGGAAAAAGGGGACACGC
CTGACGGGAGCAACGAGAACAGCGACGGCTCGGAGAACGGCGACGACAAC
AACGGCGGCGACGACGGCGACGTTGACGGGGACGTCGACGGCGCCGGCGG
CGACAACACTCAGGGCAACAGCGATGGCTCGGAGGACGGCGACGCGGATG
AGCGTGATATGCACATCATGCGTCAGCTTCTCGAAGATTTCCGGGAACAG
CGACTCTCCCCTCAGGACCGCAAGGCCATGATGGAAGCTGCTGGCGGCCA
GTTCACCGAATTGATGCTGCAGCACCACACGGAGAAGTCCAACCCGCCCG
GATGGTTAGTGTCCCTCTTCCGCCCTACCCTCTCAGCGGCCTCCGCGGAA
CAGGTCACTCAGCTGAAAAACACGGTGTCATCCAATACTGCTATCATCAA
AGATCTTCAGACGGAACTTTCCAAGCTGAAGTCAGCGGTGAAGCAGCCCC
CTAACCGTGCCTCCAGCCAGGGTTCGTACAGCAAGCGGGCTCGCACCTCG
GACAAATCGGCAACCACCCCTGCTTCCAACCAGAAGGGAGGGGGGGATCA
ATGCCCCTATCCGGGATGCAAGTTCCGCCACACTATCGACAAGTGCGCCC
TAAAGAAAAGTGACGAGTCCCGGGGCTTCAAGCGTGTAGCAAACTGA
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