EsuBft574_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft574_13a-0001
Unique NameEsuBft574_13a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:11317..12177 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft574_13
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsSSF56672
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR19446
Protein domainsTRANSMEMBRANE
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from type-2 retrotransposable element r2dm os:drosophila mel [Automatic annotation]
Nb exon2
Max annot lvl33208|Metazoa
Length672
Hectar predicted targeting categoryother localisation
Evalue3.9e-32
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-14
Date creation2016-06-14
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0006259
EC3.1
GO0004518
GO0016740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft574_13aEsuBft574_13aEctocarpus subulatus male Bft15bgeneScaffold_417 11317..12177 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_13a-0001-exonagat-exon-88100Ectocarpus subulatus male Bft15bexonScaffold_417 11317..11969 -
EsuBft574_13a-0001-exonEsuBft574_13a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 12159..12177 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_13a-0001-cdsEsuBft574_13a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 11317..11969 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_13a-0001EsuBft574_13Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 11317..12177 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft574_13a-0001 ID=EsuBft574_13a-0001|Name=EsuBft574_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=672bp|location=Sequence derived from alignment at Scaffold_417:11317..12177- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCGTGATAGCTCGGGAAGGAGGAGGAAAAAGGAGAAACAAAAACA
AGTGAGGAGCCACAACACACGACTGAGCCACTACTGCGAGCGAGAGGGCA
TCCTCCCGGAGGAGCAGAGTGGTTTCTGCCCACACCCGTCGACGCTCGAC
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGG
AACGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAG
ATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCC
GACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTTGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GAACATGGTCAAGATCGGGACACAAGTGGAGTGGAGTACACGGGCAAGAA
GGGCAGGTCGGTGGGGAAGAAGACGACGATGGCGACGGACGCGGAGGCAG
GCCCTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGCTCGCGCTCG
CCGGAGAGTCTCGAGAAGATGA
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protein sequence of EsuBft574_13a-0001

>EsuBft574_13 ID=EsuBft574_13|Name=EsuBft574_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=223bp
MERDSSGRRRKKEKQKQVRSHNTRLSHYCEREGILPEEQSGFCPHPSTLD
MLFAIQRLHELARKKSTAVFACFVDLTKAYDSVERDLLWDVLRRFGVPPK
MLAVIRHFHEGMRARVRTDDGQYSEWFDVGQGLRQGCNLAPLLFNLFFAA
MLMVAVAEFDKDPKVTANMVKIGTQVEWSTRARRAGRWGRRRRWRRTRRQ
ALWAMLYADDAAIARARRRVSRR
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mRNA from alignment at Scaffold_417:11317..12177-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft574_13a-0001 ID=EsuBft574_13a-0001|Name=EsuBft574_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=861bp|location=Sequence derived from alignment at Scaffold_417:11317..12177- (Ectocarpus subulatus male Bft15b)
ATGGAGCGTGATAGCTCGGGTATGGTATCTCTGGATGTGGCGTGAAAGCC
TGGTGGCGTGCTAGTCGTGGTGTAAAGGTATAAGTAAGGACGTGGATGTC
CGGAAGGAGTGATAGCCGGTGGCGTGATAGCCAGGATTGGCGTGGAAGTC
GTGGCGTGATAGCCTTGGTAGCGTGATCGCCGGGGAAAAAGGACTTGATT
GTACACAGGAAGGAGGAGGAAAAAGGAGAAACAAAAACAAGTGAGGAGCC
ACAACACACGACTGAGCCACTACTGCGAGCGAGAGGGCATCCTCCCGGAG
GAGCAGAGTGGTTTCTGCCCACACCCGTCGACGCTCGACATGCTGTTCGC
CATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGTGTTCG
CGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGGAACGAGACCTA
CTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAGATGCTGGCGGT
CATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCGAACGGACGACG
GGCAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCCGACAGGGATGC
AACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCGATGCTCATGGT
TGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGCGAACATGGTCA
AGATCGGGACACAAGTGGAGTGGAGTACACGGGCAAGAAGGGCAGGTCGG
TGGGGAAGAAGACGACGATGGCGACGGACGCGGAGGCAGGCCCTGTGGGC
CATGCTCTACGCTGACGACGCGGCCATCGCTCGCGCTCGCCGGAGAGTCT
CGAGAAGATGA
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Coding sequence (CDS) from alignment at Scaffold_417:11317..12177-

>EsuBft574_13a-0001 ID=EsuBft574_13a-0001|Name=EsuBft574_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=672bp|location=Sequence derived from alignment at Scaffold_417:11317..12177- (Ectocarpus subulatus male Bft15b)
ATGGAGCGTGATAGCTCGGGAAGGAGGAGGAAAAAGGAGAAACAAAAACA
AGTGAGGAGCCACAACACACGACTGAGCCACTACTGCGAGCGAGAGGGCA
TCCTCCCGGAGGAGCAGAGTGGTTTCTGCCCACACCCGTCGACGCTCGAC
ATGCTGTTCGCCATCCAGCGGCTCCATGAGCTCGCGAGGAAGAAGAGTAC
TGCGGTGTTCGCGTGCTTCGTCGACCTCACCAAGGCATACGATTCGGTGG
AACGAGACCTACTGTGGGACGTGCTCCGACGCTTCGGCGTGCCCCCGAAG
ATGCTGGCGGTCATTCGCCACTTCCACGAGGGCATGAGGGCGCGCGTCCG
AACGGACGACGGGCAGTACTCGGAATGGTTCGACGTGGGCCAAGGCCTCC
GACAGGGATGCAACCTGGCCCCGCTGCTGTTCAACTTGTTCTTTGCCGCG
ATGCTCATGGTTGCCGTGGCCGAGTTCGACAAGGACCCCAAGGTGACGGC
GAACATGGTCAAGATCGGGACACAAGTGGAGTGGAGTACACGGGCAAGAA
GGGCAGGTCGGTGGGGAAGAAGACGACGATGGCGACGGACGCGGAGGCAG
GCCCTGTGGGCCATGCTCTACGCTGACGACGCGGCCATCGCTCGCGCTCG
CCGGAGAGTCTCGAGAAGATGA
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