EsuBft569_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft569_9a-0001
Unique NameEsuBft569_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:467781..469739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft569_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_002450.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft569_9aEsuBft569_9aEctocarpus subulatus male Bft15bgeneScaffold_242 467781..469739 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_9a-0001-exonagat-exon-10557Ectocarpus subulatus male Bft15bexonScaffold_242 467781..468328 -
EsuBft569_9a-0001-exonEsuBft569_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 468589..469215 -
EsuBft569_9a-0001-exonagat-exon-10558Ectocarpus subulatus male Bft15bexonScaffold_242 469596..469739 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_9a-0001-exonagat-three_prime_utr-18536Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_242 467781..468034 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_9a-0001-cdsEsuBft569_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 468035..468328 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_9a-0001EsuBft569_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 468035..469739 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft569_9a-0001 ID=EsuBft569_9a-0001|Name=EsuBft569_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1319bp|location=Sequence derived from alignment at Scaffold_242:467781..469739- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACGCCGTCGGCGCGGCCTAATTTCTGCATGCTGATGATCGATGG
CAACGTGTTCCTTTCAAGAACCCTTCGCGAACTGTGCTCGAGGTTTCACT
CTTCCAACCTCGTCCCGGTGGAGTGCCCAATCGTTGTGGCGGAGAGCGAT
TCGGGCGTGTACGGAGCAGGAGTTTCCGGTGAAGGTAACCACTCGACTTA
CGAAGGCCGGGACATCGAGCTCGATCCCCCACCACCCACCACGTGCGTGC
TCACCGTTGCATACATCCCACCGGAGGGGGGGAGCGACGGCGGCCTACCG
CAGCCTCGAGTTAAGACCTTCATCGCCAGCCACAATTTCCAGAACACACG
GAATGACGGCCCGTCCGTCGACGGTGTCGCACCCGTTTTCACGGAGTGCG
CTCCCGCCGTTACCTTCGGAACCAAACTGGCAGCAGTGAACGGGGAGAAC
AAGCCTGGCGGCACTTCTAGCTCGGCGTCTGGCACTAATCTCACTGAACC
CGCGGGGTCAAGCGGGCCACCCCAGCCGGTGAGGAGGTCGAGCCGGGCGA
CGACCGTGGCTAATTCGAAGGTGGCATCGCAGCGCGTGTACCCGAAGCTA
ACACCGCCATCATCCAGCGTCCCGCTAGAGGACGCTGACACCGTTTTTCT
CGTGGGCGATCACCACCCGCTGTTGATGGCGAGAACGGCGGACTGGCTCC
AGAAGTTGCTTGGGGAAGATACGGTGGTCCTTGGTGGCAGCACGACATGC
GCTTTGTGTATTGGCAGCCAGATGTTTCCCGATCCCGAAGAGAAGGTCAG
AAATTACTCGCGACCAAGCATCCAAGCTCGCGTTGTGGTCGGCGTCGCTC
TGCGAGGAGTACACGCCCTGGCGATTTCAGCGAAAGGCTACGAAGGTGTC
GGGCCTGTATTTAAGATAGACACCACGGCTGACCCTCAAGGAGGCCCACA
GGCAGAGAAGGGCGAGGTGCGGAAGAGGAGGGTTAATTTGGGCACCACCG
TCGGTACGATCAGAATTGTAGTCGGGTGTGACGGGATTTATTCGGCGACG
GGATGTCCTGGCTGACCTTGACACCGAGATGTCCAACATTTATCGTCTTT
TTCACACGCGTAAACCGAGAAATATGTGAAGGTCCCAGATCCCCGCCAAA
CGAGACTAGACCTCTCTCTGGGTATTCGCATACGTCCACCACCACGTCTC
CTTCGAGCAAAGAGAGAAAACAAGAACCTGAGTTGAGACTTGAATCACCC
ACGGAGTGAGCACTAGCCACAGATACCAGCAGACGAGCGGATGGATCCAT
GGGATCGGCTACATTTCTG
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protein sequence of EsuBft569_9a-0001

>EsuBft569_9 ID=EsuBft569_9|Name=EsuBft569_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=354bp
MLTPSARPNFCMLMIDGNVFLSRTLRELCSRFHSSNLVPVECPIVVAESD
SGVYGAGVSGEGNHSTYEGRDIELDPPPPTTCVLTVAYIPPEGGSDGGLP
QPRVKTFIASHNFQNTRNDGPSVDGVAPVFTECAPAVTFGTKLAAVNGEN
KPGGTSSSASGTNLTEPAGSSGPPQPVRRSSRATTVANSKVASQRVYPKL
TPPSSSVPLEDADTVFLVGDHHPLLMARTADWLQKLLGEDTVVLGGSTTC
ALCIGSQMFPDPEEKVRNYSRPSIQARVVVGVALRGVHALAISAKGYEGV
GPVFKIDTTADPQGGPQAEKGEVRKRRVNLGTTVGTIRIVVGCDGIYSAT
GCPG
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mRNA from alignment at Scaffold_242:467781..469739-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft569_9a-0001 ID=EsuBft569_9a-0001|Name=EsuBft569_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1959bp|location=Sequence derived from alignment at Scaffold_242:467781..469739- (Ectocarpus subulatus male Bft15b)
ATGCTCACGCCGTCGGCGCGGCCTAATTTCTGCATGCTGATGATCGATGG
CAACGTGTTCCTTTCAAGAACCCTTCGCGAACTGTGCTCGAGGTTTCACT
CTTCCAACCTCGTCCCGGTGGAGTGCCCAATCGTTGTGGCGGAGGTGAGC
GCGAGAAAGAATGATCGTTTTATCGTAAGGCGGGCTCTACAATAGTAGTT
TCGTGACGAAGGCAGTTGGGTTGAGGACACGAGAGAAGACTGACACCCCG
TATGGGACACTTCGACGCCAAACCTTTCAAGCGCGTTTTGAACTCAGGAA
GCAGCATCGATACATGAGCGCAGCAACCCTCCAGCACTTCGGTACGTCAA
ATGACGGAGGAGTCCCCGTACTGGTGTTGTTGGACGATCATACTTGAGTT
TGCAGGGCACCGCGCACCACCAAGTGAACGACATCAAACTTGCTCCGGTC
AAAACGTGTATGTGCATTGTTCGTGCGGGACGTGATTGCCTCTACCCTTT
CCCGCCGTCACGGGTGACCACAAGAGCGATTCGGGCGTGTACGGAGCAGG
AGTTTCCGGTGAAGGTAACCACTCGACTTACGAAGGCCGGGACATCGAGC
TCGATCCCCCACCACCCACCACGTGCGTGCTCACCGTTGCATACATCCCA
CCGGAGGGGGGGAGCGACGGCGGCCTACCGCAGCCTCGAGTTAAGACCTT
CATCGCCAGCCACAATTTCCAGAACACACGGAATGACGGCCCGTCCGTCG
ACGGTGTCGCACCCGTTTTCACGGAGTGCGCTCCCGCCGTTACCTTCGGA
ACCAAACTGGCAGCAGTGAACGGGGAGAACAAGCCTGGCGGCACTTCTAG
CTCGGCGTCTGGCACTAATCTCACTGAACCCGCGGGGTCAAGCGGGCCAC
CCCAGCCGGTGAGGAGGTCGAGCCGGGCGACGACCGTGGCTAATTCGAAG
GTGGCATCGCAGCGCGTGTACCCGAAGCTAACACCGCCATCATCCAGCGT
CCCGCTAGAGGACGCTGACACCGTTTTTCTCGTGGGCGATCACCACCCGC
TGTTGATGGCGAGAACGGCGGACTGGCTCCAGAAGTTGCTTGGGGAAGAT
ACGGTGGTCCTTGGTGGCAGCACGACATGCGCTTTGTGTATTGGCAGCCA
GGTGAGGCAAACGCTTCGAGTGTTGTTCTCGCCGCCCAGGGCCACGCAAT
TCGAGTTGAACGCACGGTTAAGTCTCTTGTGCTATTCCCGCGTTATTCTC
CTCGACAAACAGCAGTCACCCGAACAAAATTATTGTTGGCAACGCGTGGG
ACAGCTCCTAGATGCGGGACATGCTTCGTGGGACAGCTCTTCGATGCGGC
ACATGCTTCTTCCAAACCCAATCCATACCATGATATGGTACGTTCCCCCC
CCCCTATCCAGATGTTTCCCGATCCCGAAGAGAAGGTCAGAAATTACTCG
CGACCAAGCATCCAAGCTCGCGTTGTGGTCGGCGTCGCTCTGCGAGGAGT
ACACGCCCTGGCGATTTCAGCGAAAGGCTACGAAGGTGTCGGGCCTGTAT
TTAAGATAGACACCACGGCTGACCCTCAAGGAGGCCCACAGGCAGAGAAG
GGCGAGGTGCGGAAGAGGAGGGTTAATTTGGGCACCACCGTCGGTACGAT
CAGAATTGTAGTCGGGTGTGACGGGATTTATTCGGCGACGGGATGTCCTG
GCTGACCTTGACACCGAGATGTCCAACATTTATCGTCTTTTTCACACGCG
TAAACCGAGAAATATGTGAAGGTCCCAGATCCCCGCCAAACGAGACTAGA
CCTCTCTCTGGGTATTCGCATACGTCCACCACCACGTCTCCTTCGAGCAA
AGAGAGAAAACAAGAACCTGAGTTGAGACTTGAATCACCCACGGAGTGAG
CACTAGCCACAGATACCAGCAGACGAGCGGATGGATCCATGGGATCGGCT
ACATTTCTG
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Coding sequence (CDS) from alignment at Scaffold_242:467781..469739-

>EsuBft569_9a-0001 ID=EsuBft569_9a-0001|Name=EsuBft569_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1065bp|location=Sequence derived from alignment at Scaffold_242:467781..469739- (Ectocarpus subulatus male Bft15b)
ATGCTCACGCCGTCGGCGCGGCCTAATTTCTGCATGCTGATGATCGATGG
CAACGTGTTCCTTTCAAGAACCCTTCGCGAACTGTGCTCGAGGTTTCACT
CTTCCAACCTCGTCCCGGTGGAGTGCCCAATCGTTGTGGCGGAGAGCGAT
TCGGGCGTGTACGGAGCAGGAGTTTCCGGTGAAGGTAACCACTCGACTTA
CGAAGGCCGGGACATCGAGCTCGATCCCCCACCACCCACCACGTGCGTGC
TCACCGTTGCATACATCCCACCGGAGGGGGGGAGCGACGGCGGCCTACCG
CAGCCTCGAGTTAAGACCTTCATCGCCAGCCACAATTTCCAGAACACACG
GAATGACGGCCCGTCCGTCGACGGTGTCGCACCCGTTTTCACGGAGTGCG
CTCCCGCCGTTACCTTCGGAACCAAACTGGCAGCAGTGAACGGGGAGAAC
AAGCCTGGCGGCACTTCTAGCTCGGCGTCTGGCACTAATCTCACTGAACC
CGCGGGGTCAAGCGGGCCACCCCAGCCGGTGAGGAGGTCGAGCCGGGCGA
CGACCGTGGCTAATTCGAAGGTGGCATCGCAGCGCGTGTACCCGAAGCTA
ACACCGCCATCATCCAGCGTCCCGCTAGAGGACGCTGACACCGTTTTTCT
CGTGGGCGATCACCACCCGCTGTTGATGGCGAGAACGGCGGACTGGCTCC
AGAAGTTGCTTGGGGAAGATACGGTGGTCCTTGGTGGCAGCACGACATGC
GCTTTGTGTATTGGCAGCCAGATGTTTCCCGATCCCGAAGAGAAGGTCAG
AAATTACTCGCGACCAAGCATCCAAGCTCGCGTTGTGGTCGGCGTCGCTC
TGCGAGGAGTACACGCCCTGGCGATTTCAGCGAAAGGCTACGAAGGTGTC
GGGCCTGTATTTAAGATAGACACCACGGCTGACCCTCAAGGAGGCCCACA
GGCAGAGAAGGGCGAGGTGCGGAAGAGGAGGGTTAATTTGGGCACCACCG
TCGGTACGATCAGAATTGTAGTCGGGTGTGACGGGATTTATTCGGCGACG
GGATGTCCTGGCTGA
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