EsuBft569_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft569_8a-0001
Unique Name	EsuBft569_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:470647..472608 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G901
ProteomeId	EsuBft569_8
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	111
Hectar predicted targeting category	other localisation
Evalue	6.91e-15
EggNOG OGs	2CKQX@1\|root,2SG1M@2759\|Eukaryota
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_002440.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a	EsuBft569_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 470647..472608 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a-0001-exon	agat-exon-10556	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 470647..470792 +
EsuBft569_8a-0001-exon	EsuBft569_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 471642..472608 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a-0001-exon	agat-five_prime_utr-11791	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 470647..470704 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a-0001-cds	EsuBft569_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 470705..470792 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a-0001-exon	agat-three_prime_utr-18535	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 471737..472608 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_8a-0001	EsuBft569_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 470705..471736 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:470647..472608+
coding sequence from alignment at Scaffold_242:470647..472608+

spliced messenger RNA

>EsuBft569_8a-0001 ID=EsuBft569_8a-0001|Name=EsuBft569_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1113bp|location=Sequence derived from alignment at Scaffold_242:470647..472608+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACACAGCGGCTCTGCCTGCTGCTGTACGGAGCAGGAGTGCGCGGGTTTAC
CGGGTGCAATGCCGGACTCAGCACCCCCCATTTGCGAGAATTGTAAACCC
GGTAAAGCAACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGCTA
CGTACGATGTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAATGTGGCG
GATTGTCGAACGGAATGGAACGACTTCAGAGCGTGCCATAAAGAGTCACG
GAGAAGATCTACGGGCGACGCATAAACTTCCGTGCAGAATGTTCAGCTCG
ATACGGCTCGATCGAGATATGTCTGCCAGTGGGAGCGGAGAGGTTGGATC
TTGAGTCTTGGTAACTGCACTCGGAAAACCGTGGAGCCATAAGATCTACT
AGACCAGCTCCTTGTGGCCTGAAGGGTGGCCAGTGTTTCAGCTGCTACTT
TTGCTGTTGCATCTCTGGTGTACGGCGTTTGTGAGCGCACTGCCTGTAAG
GCCGCCAGTGCTTTAGTCTAGGTGCTTTGGGGCTTTGTCGCGTTCTCCGT
GAAAACGTGGACACTGGCAACGCCATCGTGCATGCGCATGCGTTGTTCTA
CGTACGAAGAAAGCTCTTCCCTCCGCTTCATTGCATCTGGGGGGAGAGAG
CACCCGCTTGTAGTTTGTTGTACCTACATAGCTGAGCAAATACATCAATG
CGGACTTCCTTGCCGTTGGATGTTTTGGAGTGTTGCGTTGGTGCTTCCAA
GAGCTGCAGACTAGCTATGTTACGTGTCTTCGATGCGTAAGAGCTCTAGA
ACAGCTTGTAGACTCTTGCGGCCACTGACTGTAATACTGTTGATGTCCAA
GATGCAGCCCTGACGCAAGGAGTGCTAGATCAGCTTGTAGTTCCGCCAGG
CTGCTTGTAGGAGGTGATACACCCGGTATCTGTCGCGCACAGAAAAAGAC
AGTGTCAACCACGCCCTGCCTCTACGACCTGGTCTGAGTAAGCACCTTGA
CGTGCATCCGTCATCACTCCGTCATGCCACGCAGCGTACGGTAGTGCCCT
TCCTTGTGGATTTATCGGCCCTGGTGTTTATCGAGCATCCGTCGCACGTC
AACAACATTTACC

protein sequence of EsuBft569_8a-0001

>EsuBft569_8 ID=EsuBft569_8|Name=EsuBft569_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=60bp
MPDSAPPICENCKPGKATDEREAAIEKMDCYVRCCRCLHGGSQRECGGLS
NGMERLQSVP

mRNA from alignment at Scaffold_242:470647..472608+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft569_8a-0001 ID=EsuBft569_8a-0001|Name=EsuBft569_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1962bp|location=Sequence derived from alignment at Scaffold_242:470647..472608+ (Ectocarpus subulatus male Bft15b)
ACACAGCGGCTCTGCCTGCTGCTGTACGGAGCAGGAGTGCGCGGGTTTAC
CGGGTGCAATGCCGGACTCAGCACCCCCCATTTGCGAGAATTGTAAACCC
GGTAAAGCAACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGTCA
GGCGAGTGCGATGACTGTTCAGAGCGAGAGCTTTTGTAGCCGCCCAAGAC
GCAGTCACTCATCACCAAACCATGCAGAACAAACATCTCCGAAGCAGCAC
CGTATAGTCGATGCGGAAAGTAAATGAGAGTTATCTGATATTTCCGTGCG
GTTGGCGTCCCAACTGTTGAACAAACAAGATGTTCGTGCAACAGCGGAAC
TGCAACTAACTTCGGCCCCCGGGGTTGGAGTTGACCGTACGAAAGCGCCC
TCATTTTGTCTTCGATGCAAACACACAACGTGTGAAGAGGGAATCGTACC
CGACAGACGTTGGGGAGATTATACCTTCACCAAGGTGGTCTCCACATTAC
TAGACACTCTGACATCTCACGTCGACGCCATTGTGAAAAGAGGGAATCGT
CCTCGACAGACGTTGGGGGGATTATGCCTTTATCAAGGTGGTCTCCGCCA
ACGCATTCGTCTCTGTTCACAGACGAGTCCACGATTTCTTTTTCTTTTCC
CTCCTATTTCGGTACGCGTGTGACCATCGCTCCAATTTTTAGAAAGTGAA
ACGAACGAGCGACCTTGCCCGTCCAAGTGGAGATTATTTCCAACTCTTTT
TTTCACTACCATTTCATTACATAGTCCATGGGACGGCGCTAGGCCCCCAA
ACGTTATGCGTCGGGACACAGCAGTTTTTCCAACGCGCGTGAGCAGAAGC
TTCCCAAATGAATTATGAAAGAACGTGCGTTTCCCGCAGGACGACCAGAG
TCACGTTTCCAACGCGTTGCTGAGATAAGAAAATACACGCATTCTGATAG
ATAATGATGAACTTTTGGGCGCCTCACCTTGTCCGTATACGCCAGGCTAC
GTACGATGTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAATGTGGCGG
ATTGTCGAACGGAATGGAACGACTTCAGAGCGTGCCATAAAGAGTCACGG
AGAAGATCTACGGGCGACGCATAAACTTCCGTGCAGAATGTTCAGCTCGA
TACGGCTCGATCGAGATATGTCTGCCAGTGGGAGCGGAGAGGTTGGATCT
TGAGTCTTGGTAACTGCACTCGGAAAACCGTGGAGCCATAAGATCTACTA
GACCAGCTCCTTGTGGCCTGAAGGGTGGCCAGTGTTTCAGCTGCTACTTT
TGCTGTTGCATCTCTGGTGTACGGCGTTTGTGAGCGCACTGCCTGTAAGG
CCGCCAGTGCTTTAGTCTAGGTGCTTTGGGGCTTTGTCGCGTTCTCCGTG
AAAACGTGGACACTGGCAACGCCATCGTGCATGCGCATGCGTTGTTCTAC
GTACGAAGAAAGCTCTTCCCTCCGCTTCATTGCATCTGGGGGGAGAGAGC
ACCCGCTTGTAGTTTGTTGTACCTACATAGCTGAGCAAATACATCAATGC
GGACTTCCTTGCCGTTGGATGTTTTGGAGTGTTGCGTTGGTGCTTCCAAG
AGCTGCAGACTAGCTATGTTACGTGTCTTCGATGCGTAAGAGCTCTAGAA
CAGCTTGTAGACTCTTGCGGCCACTGACTGTAATACTGTTGATGTCCAAG
ATGCAGCCCTGACGCAAGGAGTGCTAGATCAGCTTGTAGTTCCGCCAGGC
TGCTTGTAGGAGGTGATACACCCGGTATCTGTCGCGCACAGAAAAAGACA
GTGTCAACCACGCCCTGCCTCTACGACCTGGTCTGAGTAAGCACCTTGAC
GTGCATCCGTCATCACTCCGTCATGCCACGCAGCGTACGGTAGTGCCCTT
CCTTGTGGATTTATCGGCCCTGGTGTTTATCGAGCATCCGTCGCACGTCA
ACAACATTTACC

Coding sequence (CDS) from alignment at Scaffold_242:470647..472608+

>EsuBft569_8a-0001 ID=EsuBft569_8a-0001|Name=EsuBft569_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=183bp|location=Sequence derived from alignment at Scaffold_242:470647..472608+ (Ectocarpus subulatus male Bft15b)
ATGCCGGACTCAGCACCCCCCATTTGCGAGAATTGTAAACCCGGTAAAGC
AACAGACGAGCGAGAAGCAGCGATAGAAAAAATGGATTGCTACGTACGAT
GTTGTCGCTGCTTGCATGGAGGCTCACAGAGGGAATGTGGCGGATTGTCG
AACGGAATGGAACGACTTCAGAGCGTGCCATAA