EsuBft569_6a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft569_6a-0001
Unique NameEsuBft569_6a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:485992..489157 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G903
ProteomeIdEsuBft569_6
Protein domainsIPR015943
Protein domainsIPR001680
Protein domainsIPR017986
Ownerapollo_admin@sb-roscoff.fr
Nb exon7
Max annot lvl2759|Eukaryota
Length131
Hectar predicted targeting categoryother localisation
Evalue4.47e-282
EggNOG OGs2CME1@1|root,2QQ39@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameCFAP43
GOsGO:0001932,GO:0001933,GO:0003674,GO:0004857,GO:0004860,GO:0006469,GO:0008150,GO:0009892,GO:0009966,GO:0009968,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019887,GO:0023051,GO:0023057,GO:0030234,GO:0031323,GO:0031324,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0033673,GO:0042325,GO:0042326,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043549,GO:0044092,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0060548,GO:0065007,GO:0065009,GO:0080090,GO:0098772,GO:1902041,GO:1902042,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Cross References
External references for this mRNA
DatabaseAccession
GO0031227
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft569_6aEsuBft569_6aEctocarpus subulatus male Bft15bgeneScaffold_242 485992..489157 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_6a-0001EsuBft569_6Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 485992..489157 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_6a-0001-exonagat-exon-10536Ectocarpus subulatus male Bft15bexonScaffold_242 485992..486192 -
EsuBft569_6a-0001-exonagat-exon-10534Ectocarpus subulatus male Bft15bexonScaffold_242 486712..486909 -
EsuBft569_6a-0001-exonagat-exon-10533Ectocarpus subulatus male Bft15bexonScaffold_242 487352..487559 -
EsuBft569_6a-0001-exonagat-exon-10538Ectocarpus subulatus male Bft15bexonScaffold_242 487907..488127 -
EsuBft569_6a-0001-exonagat-exon-10535Ectocarpus subulatus male Bft15bexonScaffold_242 488301..488584 -
EsuBft569_6a-0001-exonEsuBft569_6a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 488783..488952 -
EsuBft569_6a-0001-exonagat-exon-10537Ectocarpus subulatus male Bft15bexonScaffold_242 489129..489157 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_6a-0001-cdsEsuBft569_6a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 485992..486192 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft569_6a-0001 ID=EsuBft569_6a-0001|Name=EsuBft569_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1311bp|location=Sequence derived from alignment at Scaffold_242:485992..489157- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGGAAGGTAAATCACATTCAAATCCTCCACAGTGTATTTGTGGA
CTTTGAACGACATGCAAGTGAACCAGGCGTGCCTTCAAGTGGGGTAAACT
CCCTGCGGGCTTTTCATAATGGAAAGGTCGTGGCTCTGACCTGTCTTCGA
CCACTGTCGACCGAAGTTGGGGACTCAGGTGGTGTCCTGATAACTGGAGG
TGAAGATGGTGCAATCCGAGCATGGACTGCAGACCGAGGGAAGTTGTGTG
GTACACAAACGTTCTCGGCGTTTTCAAAGACACAAGAGCTCGACGAGGCC
ATCGCGGGCGACAAGCGGGCTTCTCTCGATGAAAGGGTTGTCACTTTGGA
AGGAGCCGGAGATTCCCCGAAAAAGAAGGGTGACGTGCCAGTCCCGGTCT
GTGCCTTGGCTTCTTGCAGAGCCCAGCCTTTGGTCGCCATTGGTCTCTGT
CATGGAGCGGTGCACATTGCTTACGTCAAACAGACATCTGCTTACGATGT
GAGCATGACGTCCCTTTGGAGCGAACGTTTCTACCGCGGTCCCGCATCGC
AGCTGTGCTTCCATCCCACGAAGACTCTGCTGGCCATAGCCTCTACGGAC
GATCGCTCGGTGCACGTGATCAATTTTCACAATTCGATGGGGGATTTCGT
GGTTTGCGGTGTTGGCGTGGCGCCGCCGGGGCGAGGAGGCGTAAACGGAT
TAATGTGGCGGGGAGTTGACATCGTTTTCAGCACGGAGGACTGCCTCGTG
TGCGCTCTTCAAGTCAAGTCGGAGCGTCGCGCGCGCCCCACCCGCGTTGA
CCCCCTTTCGTGGGTTTTGCGCACGCCCACACCGTTGCACGGGATGCGAC
CTCATCCGCAGATCCGGCACGGGCCGTTCTTCGCCGTGTCGGCTGATATG
CGTGTTTTGCAGGTTTTACCCGCACTTCCTGAGAAAGGAATCCCTTCCAC
CTTGGCCGACGGCGGGGAGCCGAAGGCTCTATCGCCGCTCGACACCCTCG
AGGCGCATCAGAAAGGTGTAGCGGTTATGGCCGCGTCACCAGATGGCCGC
TTTATGGCCACGGGAGGGGCCGATGGACTTGTATGCCTGTGGATGGTGTA
CGAGAACCAGGTGGAACTTCTCAACTCCGCTCTCGTGCACGCCGGTCCGG
TGATCTCACTGGCTTTTGCGGCCAACTCGGCGATTTTGTTCACAACGTCT
CTCGACGCAACAGTGTTCGGCCTCGCTCTGGAAGGTCTCCAAGAAGGGTC
GGAAGCCCAGCCACCACCAGTAGTGGCGACGCTGGAGGTATACTACTTGA
AGTACCTTTAA
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protein sequence of EsuBft569_6a-0001

>EsuBft569_6 ID=EsuBft569_6|Name=EsuBft569_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=436bp
MKRKVNHIQILHSVFVDFERHASEPGVPSSGVNSLRAFHNGKVVALTCLR
PLSTEVGDSGGVLITGGEDGAIRAWTADRGKLCGTQTFSAFSKTQELDEA
IAGDKRASLDERVVTLEGAGDSPKKKGDVPVPVCALASCRAQPLVAIGLC
HGAVHIAYVKQTSAYDVSMTSLWSERFYRGPASQLCFHPTKTLLAIASTD
DRSVHVINFHNSMGDFVVCGVGVAPPGRGGVNGLMWRGVDIVFSTEDCLV
CALQVKSERRARPTRVDPLSWVLRTPTPLHGMRPHPQIRHGPFFAVSADM
RVLQVLPALPEKGIPSTLADGGEPKALSPLDTLEAHQKGVAVMAASPDGR
FMATGGADGLVCLWMVYENQVELLNSALVHAGPVISLAFAANSAILFTTS
LDATVFGLALEGLQEGSEAQPPPVVATLEVYYLKYL
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mRNA from alignment at Scaffold_242:485992..489157-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft569_6a-0001 ID=EsuBft569_6a-0001|Name=EsuBft569_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3166bp|location=Sequence derived from alignment at Scaffold_242:485992..489157- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGAAGGTAAATCACATTCAAATGTACGAACGCTTGGGATCAAC
AAGGGTGGTGCTATACATATCTAATTGTCATGTGTCGGCTGTGGACATGG
CGCTCTTTCGGGCAGAGGACGAATCTATCATCTGCCCTGGATCCGTCCTG
CGTGCACCCAACACCGTCACCAACTGTGTTTTGTTCTTGGGCGACAATCC
TGCAGCCTCCACAGTGTATTTGTGGACTTTGAACGACATGCAAGTGAACC
AGGCGTGCCTTCAAGTGGGGTAAACTCCCTGCGGGCTTTTCATAATGGAA
AGGTCGTGGCTCTGACCTGTCTTCGACCACTGTCGACCGAAGTTGGGGAC
TCAGGTGGTGTCCTGATAACTGGAGGTGGGTGGCATCTTGTGAACGCCGA
TAAATCGGAAAATCGTGCTTCAGCATGCGGAAATCTTCTCAGCGACGCGC
GCTCGGTCGAACCCGAATAACCGCAAGGCAATGACAAGGCAGTGTTCTGG
CTCCATCATTCGCACGCACAGAATGTCTAGCAATCTGAAAAGCATGGCAT
CATCCCAAAACCCACAAGCACAGGTGAAGATGGTGCAATCCGAGCATGGA
CTGCAGACCGAGGGAAGTTGTGTGGTACACAAACGTTCTCGGCGTTTTCA
AAGACACAAGAGCTCGACGAGGCCATCGCGGGCGACAAGCGGGCTTCTCT
CGATGAAAGGGTTGTCACTTTGGAAGGAGCCGGAGATTCCCCGAAAAAGA
AGGGTGACGTGCCAGTCCCGGTCTGTGCCTTGGCTTCTTGCAGAGCCCAG
CCTTTGGTCGCCATTGGTCTCTGTCATGGAGCGGTGCACATTGCTTACGT
CAAACAGGTGAAATTTGTCCCTTCGAACCGACTTTATTATGGAGTGGGCT
AACCGATCGATGGCTCAACCCAAGATATCTGTACCAGCAGAATAGGCAAT
ACTGAAACTTCAGGAGGCGTTACGATTTTTCGGTCTGTTTTGCTCCTCTT
CCCCCTTGCGCATTTGCTTAATTTCTGCAGACATCTGCTTACGATGTGAG
CATGACGTCCCTTTGGAGCGAACGTTTCTACCGCGGTCCCGCATCGCAGC
TGTGCTTCCATCCCACGAAGACTCTGCTGGCCATAGCCTCTACGGACGAT
CGCTCGGTGCACGTGATCAATTTTCACAATTCGATGGGGGATTTCGTGGT
TTGCGGTGTTGGCGTGGCGCCGCCGGGGCGAGGAGGCGTAAACGGATTAA
TGTGAGATGAGACAAATGTTTTGCACCACGAAAGGATACATGAGGACGGG
ATATGGAAGCTGTCAAGCGGACAAAGTGCAGTCCTTGTTGTCGCCTGTGT
GTTACGTGTAGCACCTACGAATCAACATGCTTGTGTCGGCAACGCTGCGG
ATAATGAGGGACACTGAGCGATTCGTTTCTGCTCTCCACCACGTAGTTCT
AGAGACCTCGACACCCGGTACCGCGATGCTTCGATATGCAAACGGTGCGC
TGTAAATAGCAAAGCAATGATAATACTTATGAAAACATAGGGCCCTCCCA
TTCTCGAAAGCAACGACAATTGGACGCTTTCTTTACGATTGGGTTCAGGT
GGCGGGGAGTTGACATCGTTTTCAGCACGGAGGACTGCCTCGTGTGCGCT
CTTCAAGTCAAGTCGGAGCGTCGCGCGCGCCCCACCCGCGTTGACCCCCT
TTCGTGGGTTTTGCGCACGCCCACACCGTTGCACGGGATGCGACCTCATC
CGCAGATCCGGCACGGGCCGTTCTTCGCCGTGTCGGCTGATATGCGTGTT
TTGCAGGTGCCTTTCTTCCGAAGCCGTTCTTGGCACTGTCGTTGTTAAAT
TCATTGCGGAGTATACGACACATGCAGAGTTAACTCAGAAACCAATTCTC
ACACTGTCTTCCTGATTTGTAAACTACATTATTAATTGCGCGGATGAGAC
TTTTTTGGAGGCGTGGAATCACAACGTATCGTCAATCTTTGACCGTCTTC
ATCTTCAAATGGTCGGCGTTTCCTCCTCCAGGGGCAGAGGAAACATGCTT
CTTGCAATCGTGGTTTCAACATTACACAAGTATTGTCTGCCTTTGTTTAG
TCCAACGTTTTGAGTTTGAATTAACTCACTCGATTGCCCGTCAATCAACA
TTCCAAGGGCTCAAAGTCCCACCGGTCCGTCTTCCTTTTCTCAGCCGTGT
CTTCGGGCCTTCTGACAACAAACCTCTTGATGCGCATGGTGCGCACAGGT
TTTACCCGCACTTCCTGAGAAAGGAATCCCTTCCACCTTGGCCGACGGCG
GGGAGCCGAAGGCTCTATCGCCGCTCGACACCCTCGAGGCGCATCAGAAA
GGTGTAGCGGTTATGGCCGCGTCACCAGATGGCCGCTTTATGGCCACGGG
AGGGGCCGATGGACTTGTATGCCTGTGGATGGTGTACGAGAACCAGGTTC
GCTGATCAACATTGCGTTGGTGTCATATTGTTGGATCTCGTGTCGGTGGA
TAGGTTCGGAGTTTGTCCTTGAGATGAAATCCAAGCAGTATCGAGAACCA
ACACCGGTGCGTAGCAGCATTCGCTCGTGGCCATATCCCCACCCTCCGCA
TGTTCACGTTTTCGAAATTTCGGATACGTCTACAGTATATAGACCTGGCA
TTGTTGCTTTATGCCCGTTCCGTTGTTTGCAAGATCCACACAAACAGCCG
TACACCCAATTCCTCATTGGATATTGCGACGACACCTTTGGTGGAGGTTG
GAGTAGGTATGGGAAGTCTTCGCCCCAAGTATCGCGGGTGTACTTTCTTT
TCCGATTTTCCAGCCCATTGATGACGTCTCAACAGCTACCACGCCAGCTC
TCTACCACCTACTTTCGTTTTTAGCCATTGTTTTAACTACTTTCTCTCCG
CGCGTCCGCCCGCCGCCCGCCCGCCCGCCCGCCCGCCCGCCCGTCGCCAT
TCTGAACTCGTCCAGGTGGAACTTCTCAACTCCGCTCTCGTGCACGCCGG
TCCGGTGATCTCACTGGCTTTTGCGGCCAACTCGGCGATTTTGTTCACAA
CGTCTCTCGACGCAACAGTGTTCGGCCTCGCTCTGGAAGGTCTCCAAGAA
GGGTCGGAAGCCCAGCCACCACCAGTAGTGGCGACGCTGGAGGTATACTA
CTTGAAGTACCTTTAA
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Coding sequence (CDS) from alignment at Scaffold_242:485992..489157-

>EsuBft569_6a-0001 ID=EsuBft569_6a-0001|Name=EsuBft569_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1311bp|location=Sequence derived from alignment at Scaffold_242:485992..489157- (Ectocarpus subulatus male Bft15b)
ATGAAGAGGAAGGTAAATCACATTCAAATCCTCCACAGTGTATTTGTGGA
CTTTGAACGACATGCAAGTGAACCAGGCGTGCCTTCAAGTGGGGTAAACT
CCCTGCGGGCTTTTCATAATGGAAAGGTCGTGGCTCTGACCTGTCTTCGA
CCACTGTCGACCGAAGTTGGGGACTCAGGTGGTGTCCTGATAACTGGAGG
TGAAGATGGTGCAATCCGAGCATGGACTGCAGACCGAGGGAAGTTGTGTG
GTACACAAACGTTCTCGGCGTTTTCAAAGACACAAGAGCTCGACGAGGCC
ATCGCGGGCGACAAGCGGGCTTCTCTCGATGAAAGGGTTGTCACTTTGGA
AGGAGCCGGAGATTCCCCGAAAAAGAAGGGTGACGTGCCAGTCCCGGTCT
GTGCCTTGGCTTCTTGCAGAGCCCAGCCTTTGGTCGCCATTGGTCTCTGT
CATGGAGCGGTGCACATTGCTTACGTCAAACAGACATCTGCTTACGATGT
GAGCATGACGTCCCTTTGGAGCGAACGTTTCTACCGCGGTCCCGCATCGC
AGCTGTGCTTCCATCCCACGAAGACTCTGCTGGCCATAGCCTCTACGGAC
GATCGCTCGGTGCACGTGATCAATTTTCACAATTCGATGGGGGATTTCGT
GGTTTGCGGTGTTGGCGTGGCGCCGCCGGGGCGAGGAGGCGTAAACGGAT
TAATGTGGCGGGGAGTTGACATCGTTTTCAGCACGGAGGACTGCCTCGTG
TGCGCTCTTCAAGTCAAGTCGGAGCGTCGCGCGCGCCCCACCCGCGTTGA
CCCCCTTTCGTGGGTTTTGCGCACGCCCACACCGTTGCACGGGATGCGAC
CTCATCCGCAGATCCGGCACGGGCCGTTCTTCGCCGTGTCGGCTGATATG
CGTGTTTTGCAGGTTTTACCCGCACTTCCTGAGAAAGGAATCCCTTCCAC
CTTGGCCGACGGCGGGGAGCCGAAGGCTCTATCGCCGCTCGACACCCTCG
AGGCGCATCAGAAAGGTGTAGCGGTTATGGCCGCGTCACCAGATGGCCGC
TTTATGGCCACGGGAGGGGCCGATGGACTTGTATGCCTGTGGATGGTGTA
CGAGAACCAGGTGGAACTTCTCAACTCCGCTCTCGTGCACGCCGGTCCGG
TGATCTCACTGGCTTTTGCGGCCAACTCGGCGATTTTGTTCACAACGTCT
CTCGACGCAACAGTGTTCGGCCTCGCTCTGGAAGGTCTCCAAGAAGGGTC
GGAAGCCCAGCCACCACCAGTAGTGGCGACGCTGGAGGTATACTACTTGA
AGTACCTTTAA
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