EsuBft569_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft569_4a-0001
Unique Name	EsuBft569_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:499447..504702 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft569_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	5
Length	216
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_002420.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a	EsuBft569_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 499447..504702 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a-0001	EsuBft569_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 500802..503631 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a-0001-exon	agat-exon-10523	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 499447..499601 +
EsuBft569_4a-0001-exon	agat-exon-10524	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 500768..500967 +
EsuBft569_4a-0001-exon	agat-exon-10525	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 501468..501775 +
EsuBft569_4a-0001-exon	agat-exon-10526	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 502197..502259 +
EsuBft569_4a-0001-exon	agat-exon-10527	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 502760..503065 +
EsuBft569_4a-0001-exon	EsuBft569_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 503572..504702 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a-0001-exon	agat-five_prime_utr-11789	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 499447..499601 +
EsuBft569_4a-0001-exon	agat-five_prime_utr-11790	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 500768..500801 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a-0001-cds	EsuBft569_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 500802..500967 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_4a-0001-exon	agat-three_prime_utr-18530	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 503632..504702 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:499447..504702+
coding sequence from alignment at Scaffold_242:499447..504702+

spliced messenger RNA

>EsuBft569_4a-0001 ID=EsuBft569_4a-0001|Name=EsuBft569_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2163bp|location=Sequence derived from alignment at Scaffold_242:499447..504702+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTGTGCTCTGTGCTGGCTCCGTGACAGACACTGATTGATTGAACAAAGCC
AGGGTAGCAGGAGGGCGAGGTGCAGTGACCACGACCGGAGGAAATTCGCA
CGTTTGAACGAAGGAATAGGAGATCGAGGTGGCTTCTTCGTGCAGGTCGC
GGACGGTGCGCTTGGCCGAACGAGTATTGCCCGGCATACATGGCATATAT
CTCCGCAGGGGCAGCCCGCTGTGACAAAGACTCCAAACAAGCAGTCGAAG
GGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTATGTTGTCTAGC
CCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCCCACCGTGGCTC
TCCCGGTGTAGTTCGGCGGACAGCTAGTAGACCTATCTCTATCATTCGCT
CTACATCAGTCCCAGCTCAGCTCCAAGATAGAACGCAGGCCGGTGACCCG
GATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGGAGGAGCCTTCA
CACTCGCGACAGGAGTCTTCAGCACGACTTCAATAGCGGTGCGGCAGGAG
GAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGGCTCCCCTGCTG
GCGGGGTCCCTCCCTCCGTCGCGATTTTTGGATGACTTGCCACCCCTCAG
TCTCGGGCCGCAGGCTGACAATTCGTTTGACTCCGATTGTGGTGCGCTCT
CGACGTCGTTGAAGGCAAACCGCCTGTACGCCACGTCTTGTCCGGCAAAC
ATCGGAGCGCATTTTGGCCGCCCACCAGGATCGAAACTCCAGTCCATGTC
CGTTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGAGGCGGCGGAGG
AAGGGGCAGAGGCGTCGAAGAGGATCACGGCCCTGTCCATTCTAGAGTCT
TTGTCGCAAACGCCCGCCGCACCTGTGGACGGGTCGAGAGTGGACGCAGA
ATCTGTAGAATCGTTGACGAATATCGTAGATGAGCGACTGCCTATCGAAG
ACGACGTGTTCGAGCTGGACGGGCTCGAAGGGGTGAACGAGGAGCTGGAG
GCTCTTTCTCTCTCCGAAGCAGGCAGCAGCAACATGGCTTAGCTCGCTCG
CTGTCCCCCAACGGCATGGAGCCTGCCTTAGCAGGATAAGGGCAGTCTAG
GGACTCTGAAACTCCGCTTCCCGTTACATGTCCCAGCGTTGCTTACCATC
CTTGGGGCAACAACTGTACATCAAATCGAGCTCTGGAGCTGGCCAGGTCC
GCGTTAGGGCGTCCCTAGCTGGCACAGCGCCGAATGCCATTGCTTGGCGC
TGGAGCCCGACGTTTGGGTCTGGATTGATCGACTGTGTTTGTTTGGACAA
CGGCTGGGTTACCCGGTACTTCCGCTACAAGCATATTTTTGTTGTTATTC
ACGGTAGGGTAGGACACAGTAAGTTTGGTGCAAGTTGTTGAGAGTTTGCG
GTTCCTTTTTTGGTCTTGTTTGTGTGCATAGTCCCCATTTGTTGCGCGAC
GAAGCGTAGGATAGAGGGTGCTTGACACATGCGCGTTTCGTTTGGTTGTT
GACAAGATAGATATAATACCATGAATTTGCAGGTATCAAAAGGTGGTTGG
CCTTGTACAAAAGGAGCACAGTCGCAGATGCAGCTGTGGGCTGTGGTCAC
AGCAGTTGTTGCCATGATATGTATATGTGAAAGTGTTCTTTTTTATGCGG
GAGGATGCATGAAGATGCATGAAAACAACGCCCTAACTGGGGCGATTGTT
GCAACCCCCAGGCATTAACCTCGGATATTCTCAAGTGCTTTCTCTGAAGT
TTTGGATAGAGTATCATGTTCGCTCGGATGCGGAGCACATTCCCCGAGTG
TATTCCTAGGGGCGCTGTAACGACGATCGAAACCCCTTCCGTTGACTCAT
CGCAAGGACACGATACCACAGAAATTATCACCACCGATCCTTCGCCTCCT
TTACGGTGTCAATTTCTGTTGTAAAACCGAGTGATTTTTCTTCGATCGAC
TGTGGGAGGCTCTTGGAATATCGAGCGGGGTGGATAGAAGCGTAGCTGCT
GCGATGCATGCACCCCTTGGTGCAAGGTCGGTGCCAAGATCTTCGACGGT
TTTTGAGAAATCGCTTTCTTGGAGGGCCTCATCTAGAAAACACCCATTTT
AAAAATGTTCTTC

protein sequence of EsuBft569_4a-0001

>EsuBft569_4 ID=EsuBft569_4|Name=EsuBft569_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=300bp
MAYISAGAARCDKDSKQAVEGAAGGDKESQLSAMLSSPSAGGMRLAGNYA
HRGSPGVVRRTASRPISIIRSTSVPAQLQDRTQAGDPDPEGGSGGNPANR
RSLHTRDRSLQHDFNSGAAGGVNGIVQSLPPPQAPLLAGSLPPSRFLDDL
PPLSLGPQADNSFDSDCGALSTSLKANRLYATSCPANIGAHFGRPPGSKL
QSMSVLAEGPLDEEEEEAAEEGAEASKRITALSILESLSQTPAAPVDGSR
VDAESVESLTNIVDERLPIEDDVFELDGLEGVNEELEALSLSEAGSSNMA

mRNA from alignment at Scaffold_242:499447..504702+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft569_4a-0001 ID=EsuBft569_4a-0001|Name=EsuBft569_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5256bp|location=Sequence derived from alignment at Scaffold_242:499447..504702+ (Ectocarpus subulatus male Bft15b)
GTGTGCTCTGTGCTGGCTCCGTGACAGACACTGATTGATTGAACAAAGCC
AGGGTAGCAGGAGGGCGAGGTGCAGTGACCACGACCGGAGGAAATTCGCA
CGTTTGAACGAAGGAATAGGAGATCGAGGTGGCTTCTTCGTGCAGGTCGC
GGACGGTGAGACAGGGAGTTCGTGCGGGGTTTGACCCTGATGTTATTGCC
CGCTACAAACACTATCGCGTAGAGGTTGGAAGTGAGGACCTGCTGTGAGG
TCGCGTGTTGCCATATGTTGATGGCGCGAGACTTATCGCAAAGGGATGTT
GCAGTTCCACGACCTTGAAACGTTTATTGTGTGGCGAGTGAGGAGAACAG
ATGCCGGTAAGCTTACACCGCAGCGGCTACTGCAGCGGTGTTGTCCGTCC
GCCCTAGAAGAAAAACAGTGTGAAACTCGTTTCGTTCTCTCTGCGTGACG
CAACTATGGTGTCCATTGTTTGTTGAGCAGGAGTATCAAGGGTCGACGGA
GTCTTTTGGATCCAGGGCGATAAAAGATGTGGGGCAGGTTTACTTTCGAG
ATGGTAGTCGCACGCCCCTTTGTCCAAGGCGCGTTCTACTTTCTTGTTGG
TGGCAAGTAGCGATTCGACACGTCAACTGCGGCATGCATTGTAGGAAACA
CGCGTAGACGTTGTTGCGAGACAACAAAAAAAGGCGCAAGAAATGGACTG
CTGCGGCTATCTCATTGATGCTCGGGACAGGCGACCCGTCGCCGAACAGG
GGTAGAAAGGAGTGGGAGAGTCCACAGCCTCACCCACACTCTCCGACAGG
CATCAGTTCTGAAAACATGCAGCGGTCGTTGTGTTTGGTCCGCATTCTTG
GAACCGGTGCTCGTGGCACAGCAGTGGTAACGCTATGGTGTATTAGGAAA
AGTAAATACTGAATGTTGTATGCGTAAGGACAACACTAGTCTCTGCTTCG
CACAGGAACGAAGACCAGCAGCAACCATTGCAGTGTGAGACGGCTCTAAT
CATACACCCGGTAGAGTGAAATGTGTTGTGTACAGTTTGGAGGTGAACCA
AATGTTCTAGGGATACCTACAACATTGATCAAGATGTTTTTCCGTTACTG
CAATGTAGTTACGATTTTTTTTCCGTTGACAGATATTTGCTGCATGTCAC
GTGTCCGATGCGTGTTTCAAAACGGTCGCTAGGTCCCAATTTTCGTCAAT
AACACTCTATTGCAAGTACCGGCGTTCGTTTTCGCTGTGCGAACTGCATG
CATGCAGCGCTCGCGTCGGCCAATGTACACCACCAGTATTGACACAACGA
CCGATTCGCTGCCTGTCCCAGGTGCGCTTGGCCGAACGAGTATTGCCCGG
CATACATGGCATATATCTCCGCAGGGGCAGCCCGCTGTGACAAAGACTCC
AAACAAGCAGTCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTC
AGCTATGTTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACT
ATGCCCACCGTGGCTCTCCCGGTGAGGGATGTCTGCAACATTTAGTTGGT
TTGAGAGCTTTCTTTTTGTTTGTTCGTCCTTGCTTGTGTCTACAGGTGTT
GGCAAGCGTAGTCTTTCGTGTTTCATGTGTTGGCAAGATCCTGGACGCTG
CATCTACGCTTGAGGTACCACACCTGTCGTTGAGCAGACGCGTGTATTTT
TGCGCACAGGCATGCGTGGAGATTCCGTCGCCAAGTATGCTGGATCATTG
AGTTGTGCTACCGTCATTTCTTTGCCCTGTGTTAGCTATGCAATCCATCG
ATTGTGCGCGTTTTTGTGTGTGCAAGCGTGACTTCTGAAGGGGATCATCA
CGGCTAACAGCATGTAAGCGGCTACCACAGGAGAACGGGGAAGATTTATT
TTCGCGACCGTAGGTTGCTGGGTTTCCTAGAATCCCCGCAAGGATCTGTA
TCAACATTATGCGAACATTGAGCCTTGTGATCGCTTTTGTGCTGTCTGGA
CTTCGTTTGTCTATTCTCCAGGTGTAGTTCGGCGGACAGCTAGTAGACCT
ATCTCTATCATTCGCTCTACATCAGTCCCAGCTCAGCTCCAAGATAGAAC
GCAGGCCGGTGACCCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAA
ATAGGAGGAGCCTTCACACTCGCGACAGGAGTCTTCAGCACGACTTCAAT
AGCGGTGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACC
GCAGGCTCCCCTGCTGGCGGGGTCCCTCCCTCCGTCGCGATTTTTGGATG
ACTTGCCACCCCTCAGTCTCGGGCCGCAGGTGTGTTTATCGGACAACGTG
AAGCAATCTATTTTCGCCAGGAACGGAGCGTCGCAACAGTGTCTTGTGCG
AAGGATTGCGGGGAAAACGTAGCATGGTTATTTATGTATCCGTGATGCGA
CTTTCTACGAGACCCGCGATCGGCAAAATTGTCTGCCTAGCTTGTCCTAG
CAAGAAGTTTTAGAAGAAATTCTGGTTTTGCATGAATGATTTGCTTTCGC
CCACTTTTGTCATTCCATGTGACGTACTCAGGGGAAAAGAGTGCCAGTAA
CCTGCTCTTCTATGGTCGGCCTGCCGGGCCTAACCTCTGTAAGCTAGATG
CATGCGTTGTCCGTAGTCTGGCTCATGGACATCGCTTTATACACAACGGC
CCGCTGTTCGCATCACCCATCCCGGGGACCTTGCCCCTGTTCTGGCGCAG
GCTGACAATTCGTTTGACTCCGATTGTGGTGCGCTCTCGACGTCGTTGAA
GGCAAACCGCCTGGTAAGTGGTGTCTTGCCTACCCTCCCGAATCAAACGG
TTACGTTCCATGCGCATGATGCACAACAATCGTCCGCAATTTTGGGACAC
CCTCTCTGTTGGAAGCTCCCTTCTTTTAGCTGGAAGTACATGTTTTCGCG
AGCAGGACGGGTGTGAATTTTGTGGCAAATCCCGAGAGGGCCACGTGATC
ATAGCTTTTGCGCTTGTTTGTATCAGACACCCCGCCATTGAGCACCGAGA
CGTTCGGCAACAGATTGGTAGCTCCTCTGGTGTTTGTGGCCGCCCCGAAG
TAGCGCGTTGTCACTTTAGTCGTGCGAGCAAATATGTTGTCAGCCTGCCG
GCTCCAAGATGCCCCAGTGCATTCTTCCTTCGGTTGGCGCTGCTCAAGAC
CGTTGGCTACATTCGTTTCAATGTTTTTTCTCAATTGATCTTTCCTCCAC
ACCGCCCACATCCCTCGCGTTTTCGGTCGTGTCGGTGTTGGTTATCGTCA
TGACAAAACGCAGTACGCCACGTCTTGTCCGGCAAACATCGGAGCGCATT
TTGGCCGCCCACCAGGATCGAAACTCCAGTCCATGTCCGTTCTCGCAGAG
GGGCCGTTAGATGAGGAGGAGGAAGAGGCGGCGGAGGAAGGGGCAGAGGC
GTCGAAGAGGATCACGGCCCTGTCCATTCTAGAGTCTTTGTCGCAAACGC
CCGCCGCACCTGTGGACGGGTCGAGAGTGGACGCAGAATCTGTAGAATCG
TTGACGAATATCGTAGATGAGCGACTGCCTATCGAAGACGACGTGTTCGA
GCTGGACGGGCTCGAAGGGGTGAGAACGAAACTGGCAGCAGTGCTGAGTC
CAGCAGTTGGCTCTGACTTGAAAAGAGAGTACATTCGCATATTGTTCAAA
ACTGGCGTGCATTGGTAAGAGCATGTCGAATCGGCCAGTGCGCACCTCCT
GCATGAAAAAAGTACCTGCTCTCTTGTTGATCACCCCCCTCCCTGTTCGC
AACATCATGATGTGCTACACACCAGCTACGCACGGCACGCCAGTGAATAG
CATGCATTCCTTTTGTGGATGAGTACAGTAGAGGTCCCTGTTGAGTGCCG
GGGTGTGCGCAAAAACTTCACCGGCACTATGCCGGGCACCAGCACTATAC
CGGGCACCGGCACTATTCAAAGTACAGAACGACTTGATATTCCAGTGTGA
GCGAGCCGAAAACACCGGCACTATAACCGGCACTAAACAGGGACCTCTAC
TGTACTCATACTCGGCAGAGTATGCTGTTTGTATTGTTTGTGTCAACCTC
AAACACGCTCTTTGTTTGTTCGCAGGTGAACGAGGAGCTGGAGGCTCTTT
CTCTCTCCGAAGCAGGCAGCAGCAACATGGCTTAGCTCGCTCGCTGTCCC
CCAACGGCATGGAGCCTGCCTTAGCAGGATAAGGGCAGTCTAGGGACTCT
GAAACTCCGCTTCCCGTTACATGTCCCAGCGTTGCTTACCATCCTTGGGG
CAACAACTGTACATCAAATCGAGCTCTGGAGCTGGCCAGGTCCGCGTTAG
GGCGTCCCTAGCTGGCACAGCGCCGAATGCCATTGCTTGGCGCTGGAGCC
CGACGTTTGGGTCTGGATTGATCGACTGTGTTTGTTTGGACAACGGCTGG
GTTACCCGGTACTTCCGCTACAAGCATATTTTTGTTGTTATTCACGGTAG
GGTAGGACACAGTAAGTTTGGTGCAAGTTGTTGAGAGTTTGCGGTTCCTT
TTTTGGTCTTGTTTGTGTGCATAGTCCCCATTTGTTGCGCGACGAAGCGT
AGGATAGAGGGTGCTTGACACATGCGCGTTTCGTTTGGTTGTTGACAAGA
TAGATATAATACCATGAATTTGCAGGTATCAAAAGGTGGTTGGCCTTGTA
CAAAAGGAGCACAGTCGCAGATGCAGCTGTGGGCTGTGGTCACAGCAGTT
GTTGCCATGATATGTATATGTGAAAGTGTTCTTTTTTATGCGGGAGGATG
CATGAAGATGCATGAAAACAACGCCCTAACTGGGGCGATTGTTGCAACCC
CCAGGCATTAACCTCGGATATTCTCAAGTGCTTTCTCTGAAGTTTTGGAT
AGAGTATCATGTTCGCTCGGATGCGGAGCACATTCCCCGAGTGTATTCCT
AGGGGCGCTGTAACGACGATCGAAACCCCTTCCGTTGACTCATCGCAAGG
ACACGATACCACAGAAATTATCACCACCGATCCTTCGCCTCCTTTACGGT
GTCAATTTCTGTTGTAAAACCGAGTGATTTTTCTTCGATCGACTGTGGGA
GGCTCTTGGAATATCGAGCGGGGTGGATAGAAGCGTAGCTGCTGCGATGC
ATGCACCCCTTGGTGCAAGGTCGGTGCCAAGATCTTCGACGGTTTTTGAG
AAATCGCTTTCTTGGAGGGCCTCATCTAGAAAACACCCATTTTAAAAATG
TTCTTC

Coding sequence (CDS) from alignment at Scaffold_242:499447..504702+

>EsuBft569_4a-0001 ID=EsuBft569_4a-0001|Name=EsuBft569_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=903bp|location=Sequence derived from alignment at Scaffold_242:499447..504702+ (Ectocarpus subulatus male Bft15b)
ATGGCATATATCTCCGCAGGGGCAGCCCGCTGTGACAAAGACTCCAAACA
AGCAGTCGAAGGGGCAGCCGGCGGTGACAAAGAATCCCAACTTTCAGCTA
TGTTGTCTAGCCCCTCTGCCGGGGGCATGCGATTGGCAGGGAACTATGCC
CACCGTGGCTCTCCCGGTGTAGTTCGGCGGACAGCTAGTAGACCTATCTC
TATCATTCGCTCTACATCAGTCCCAGCTCAGCTCCAAGATAGAACGCAGG
CCGGTGACCCGGATCCGGAAGGGGGTAGCGGAGGCAACCCTGCAAATAGG
AGGAGCCTTCACACTCGCGACAGGAGTCTTCAGCACGACTTCAATAGCGG
TGCGGCAGGAGGAGTTAATGGGATCGTCCAGTCCCTCCCTCCACCGCAGG
CTCCCCTGCTGGCGGGGTCCCTCCCTCCGTCGCGATTTTTGGATGACTTG
CCACCCCTCAGTCTCGGGCCGCAGGCTGACAATTCGTTTGACTCCGATTG
TGGTGCGCTCTCGACGTCGTTGAAGGCAAACCGCCTGTACGCCACGTCTT
GTCCGGCAAACATCGGAGCGCATTTTGGCCGCCCACCAGGATCGAAACTC
CAGTCCATGTCCGTTCTCGCAGAGGGGCCGTTAGATGAGGAGGAGGAAGA
GGCGGCGGAGGAAGGGGCAGAGGCGTCGAAGAGGATCACGGCCCTGTCCA
TTCTAGAGTCTTTGTCGCAAACGCCCGCCGCACCTGTGGACGGGTCGAGA
GTGGACGCAGAATCTGTAGAATCGTTGACGAATATCGTAGATGAGCGACT
GCCTATCGAAGACGACGTGTTCGAGCTGGACGGGCTCGAAGGGGTGAACG
AGGAGCTGGAGGCTCTTTCTCTCTCCGAAGCAGGCAGCAGCAACATGGCT
TAG