EsuBft569_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft569_2a-0001
Unique NameEsuBft569_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:512142..515904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G905
ProteomeIdEsuBft569_2
Protein domainsSignalP-TM
Protein domainsIPR008181
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR029054
Protein domainsIPR008180
Protein domainsSIGNAL_PEPTIDE
Protein domainsPTHR11241
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Ownerapollo_admin@sb-roscoff.fr
Notedeoxyuridine 5 -triphosphate nucleotidohydrolase os:arabidopsis thaliana gn:dut pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length745
Hectar predicted targeting categorymitochondrion
Evalue9.31e-145
EggNOG OGsCOG0756@1|root,KOG3370@2759|Eukaryota
Ec32 ortholog descriptiondUTPase-like
Ec32 orthologEc-15_002400.1
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameDUT
KEGG rclassRC00002,RC00010
KEGG koko:K01520,ko:K21286
KEGG ReactionR02100,R11560,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
GOsGO:0000166,GO:0000287,GO:0001889,GO:0003674,GO:0003824,GO:0004170,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006220,GO:0006221,GO:0006226,GO:0006244,GO:0006259,GO:0006260,GO:0006281,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009124,GO:0009129,GO:0009130,GO:0009141,GO:0009143,GO:0009147,GO:0009149,GO:0009157,GO:0009162,GO:0009165,GO:0009166,GO:0009176,GO:0009177,GO:0009200,GO:0009204,GO:0009211,GO:0009213,GO:0009219,GO:0009221,GO:0009223,GO:0009262,GO:0009263,GO:0009264,GO:0009265,GO:0009394,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010469,GO:0010646,GO:0010648,GO:0014070,GO:0015949,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0018130,GO:0019103,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022607,GO:0023051,GO:0023057,GO:0030545,GO:0030547,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032552,GO:0032556,GO:0033554,GO:0034404,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0036094,GO:0042221,GO:0042802,GO:0042975,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043393,GO:0043497,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046078,GO:0046080,GO:0046081,GO:0046385,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0046872,GO:0047429,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051259,GO:0051260,GO:0051716,GO:0055086,GO:0061008,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070206,GO:0070207,GO:0071704,GO:0071840,GO:0072527,GO:0072528,GO:0072529,GO:0090304,GO:0090407,GO:0097159,GO:0097367,GO:0098772,GO:1901135,GO:1901136,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:2000272
EC3.5.1.122,3.6.1.23
DescriptiondUTP metabolic process
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Cross References
External references for this mRNA
DatabaseAccession
GO0046080
GO0004170
GO0046134
EC3.6.1.23
GO0005730
GO0000287
GO0070062
GO0005654
GO0005622
GO0006206
GO0006226
GO0042802
GO0005739
GO0005829
GO0006261
GO2000272
GO0006281
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft569_2aEsuBft569_2aEctocarpus subulatus male Bft15bgeneScaffold_242 512142..515904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_2a-0001EsuBft569_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 512170..515904 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_2a-0001-exonagat-exon-10518Ectocarpus subulatus male Bft15bexonScaffold_242 512142..512366 +
EsuBft569_2a-0001-exonagat-exon-10516Ectocarpus subulatus male Bft15bexonScaffold_242 514725..515001 +
EsuBft569_2a-0001-exonagat-exon-10517Ectocarpus subulatus male Bft15bexonScaffold_242 515389..515520 +
EsuBft569_2a-0001-exonEsuBft569_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 515703..515798 +
EsuBft569_2a-0001-exonagat-exon-10519Ectocarpus subulatus male Bft15bexonScaffold_242 515890..515904 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_2a-0001-exonagat-five_prime_utr-11787Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_242 512142..512169 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_2a-0001-cdsEsuBft569_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 512170..512366 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft569_2a-0001 ID=EsuBft569_2a-0001|Name=EsuBft569_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=745bp|location=Sequence derived from alignment at Scaffold_242:512142..515904+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTTGCCTTGTTTCTGCTCACCAACTGCATGCGAGTCGGCTTTGCTCTCC
ACGCAGCGTTTGCCTCGAGCGCGAAGACTTCACGTCACGCTTTGTCCGCC
GCTTACAGCATCTTGTCCAACGCGACCATGGCAGTGGGCGAGACGATGCA
AGTCAAGAAGCTCTCGGAGAATGCCATTATGCCCGTTAGAGGCTCCGAAC
ACGCTGCAGGGTTCGACCTCGCGAGTGCCTACGAGGCCACGGTCCCCGCC
GGGCGTCAAGCTCTCATCAAGACGGACCTCTCCATCGCTATTCCTCCCAA
CACGTACGCGCGCATCGCCCCTCGATCCGGCCTGGCGGTGAAGAAGATGA
TCGACGTCGGGGCGGGAGTTGTGGACTACGACTACCGCGGGCCTGTTGGA
GTGGTGCTCTTCAACCATGGGAGTGAAGACTTCAAGGTCCAAAAGGGAGA
TCGTGTGGCTCAGCTCATCTTGGAGCGCATCTGCATGGCAGACATCGAGG
AGGTGACAGAGCTCTCCGAAACAACAAGAGGCAGCGGAGGATTTGGCAGT
ACCGGCGTTGAACAAGGCGCGCTTCAAACATCATCCACCGTGGCGAACGG
GGCAAAGAAAATCAAAGTGGTGGGGTCCGAGCCGGTCTCGAGAACGTCGT
CCACAGTAGCGAGTGTGCTCAAGCTAATCGACAGAGTTGACAAGCTGGAT
GTGGATGACGCTCCTACGCTTGTCGCAAAGGCGACTGCCAACTGA
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protein sequence of EsuBft569_2a-0001

>EsuBft569_2 ID=EsuBft569_2|Name=EsuBft569_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=238bp
MRVGFALHAAFASSAKTSRHALSAAYSILSNATMAVGETMQVKKLSENAI
MPVRGSEHAAGFDLASAYEATVPAGRQALIKTDLSIAIPPNTYARIAPRS
GLAVKKMIDVGAGVVDYDYRGPVGVVLFNHGSEDFKVQKGDRVAQLILER
ICMADIEEVTELSETTRGSGGFGSTGVEQGALQTSSTVANGAKKIKVVGS
EPVSRTSSTVASVLKLIDRVDKLDVDDAPTLVAKATAN
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mRNA from alignment at Scaffold_242:512142..515904+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft569_2a-0001 ID=EsuBft569_2a-0001|Name=EsuBft569_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3763bp|location=Sequence derived from alignment at Scaffold_242:512142..515904+ (Ectocarpus subulatus male Bft15b)
TGTTGCCTTGTTTCTGCTCACCAACTGCATGCGAGTCGGCTTTGCTCTCC
ACGCAGCGTTTGCCTCGAGCGCGAAGACTTCACGTCACGCTTTGTCCGCC
GCTTACAGCATCTTGTCCAACGCGACCATGGCAGTGGGCGAGACGATGCA
AGTCAAGAAGCTCTCGGAGAATGCCATTATGCCCGTTAGAGGCTCCGAAC
ACGCTGCAGGGTTCGACCTCGCGAGGTGCGTGTGTGGGCTGCTGCTGTGG
ACACATGGTGATGAAGCAAACTGCTATGTATCCCCTTAGGAAATCGTGGG
AAATTTTAGATTTCAAATTATGTTTTCAAATCTGGCGCCTTGCTCGCGTT
TCTGGCGCGTACGTCCTTTCCGATGGTTTCTGCTTAGCCTCGTTATTAAC
AGAACGAAAAAGTCGTGCAATTTTCCACGGAACGGTGAAAAGGTAATCGG
ACTTTTTTTCGCTTGTTCTATTCCACCGGTCGCCCCGATGGTCTGGTTGG
TATGTTCGACACCTTCTGGAGGTCAGGTCAGGGGTTTGAATCCCGGCGTA
AGCGAGCTTTTCTTGCGAAGTGAGTTTTTCTCTCGCTTCCCCTCCTGGCC
TAGTGGATAGCGCTAGTTCGTGTGTACACAGAGGGAAGAGAGTGCTGAAC
TCTTCTCGCATTGAAAATCGAAGGCAAAGTACCGCAGGAGGGGAGGGTAG
AGAGGGGCCCTTCTGTGTGACCACGGGTTGGAGTAAACGGCACTAGTGCT
GTGAGCGCTGATTTGAAGTGAAGACAAAAAAAAAGTCATGTCATTGCAGA
AAGTTCATTTACTTCCGTCCCTGAATACACGCGCTGCTCGGCACACAACA
GGTTGACTTGGTGTTGCTCACCATAGCAGCGGTGAAAGCGCAATGAGCAG
CACCCGACACAGAGGACAACACATTTAGAAAGATCACATCCACCCGGCCT
GCTGTTTTCAATTTTCAGCAACAACGGGCGCAGGGCAGAGTGTCGCAACC
TGGGTGTTGCGTGCGATTCTTCAGTTTGCCTGCTCATTTTTCACGGTTGC
GACTCCCATCTTTGACCACCACCTGCCCAAAGGTAGACAAGCTCAACAAT
CATAGGGCGGCAGCCGTCCTGACGGCCAGCATCATATAGATGGCCAATCC
GAAAGGATTAGCGTGTCGGAGGCCCTGCTGCTCTTCTGCTGCATGGTGCC
TTGGATTGATGTTCACGTGTCCGACCAAAAACAGATCATCTCGCCGCATT
TTTTCCAACTGCATTTTGGTGAGGTGGCACACGTCTCTCACACACCTTAT
TGAGCAGCACCCAAGCACCAATTCCTAGGAAGCAGCACGGCGCCGGGAGA
TGGTATCAAATTGACAGCCGAACCGAAGGAATTAGCGCGTTGGAGGTCTT
GGTGCTGCTGCTGTACTCGTTCTACTGTTGCCGTGTTTTGCCATGTGTGA
TTGAAAAAATTCCCCAGCACCAACATCAGCAGTTGAAGACGAGAGCACGG
CGCAATGTATAGTTTTGGACCAAGAACGGACTGAACGCCGCTTCTGCCGC
TTGCCCATCTCCACAACAGACCTGAACGTGAGTCTGGCAGGACTTTCTAG
CGTTCTCAGTGATGTTACAGCGCCCGCGGTGCGCTTGTCCGATGCTTGTG
TCAAAAACACGGATCCGTGAAAGTAGCAAGCCCCCTAAGATCCCTGCACC
TTTGCACGTATTCGGGTAAAAACGCCTCTTGTTATGTTCAAGAATACAGG
CGTCCGTGAGATGTTCCGTATTTTTTTGTCAATAATACCCCTTATACATG
CAGTAAACGCGTTGTATCAACTTGTATGTATCACTACATGTACGGACAAG
TCTTTTGCCTTTCGATCTTCCCTTTACTATTTAGGAGCTTGAATCCGAGG
CCACCCTAGCCTTCAATTGCGTAGTGTAGCCTCCTACACGGGTGAGACTC
CGGCAATGTTGCCCAGGAATGTACGACCGCCCAAAGCGTTCAGTACCTCT
AGACCGGCGGCAACGCACTGCAACAACAGAGTTAACACAGCAGCATATTT
CAATGTCAAGATCTAAACAAAAGAACTCACAAATAGACGCAAGTACAGTA
GGTTCTCTGATCATAATATGTTCCGTCTAAAGAGAACGGTTGCAAAGCGG
TGACAGCAGTAGGGCTGCCGTGTTGTCCGTGTTGTCCCCGCGTGTTGTTG
GAGTCCGTCTCAAGGTGATCCTTGGTGAAAATAGATGCGCGTAGTATTCG
TCCATAGCACGAGCCAGCTTGTGTGCCCGCCTGGTCTACGGCTGTAACTG
TAGCATGCTGGAACGTGAGATTGCCGTCGTGCATGATTTGCCTTGAACCG
TAACGTGCGCAACGCATGGCATGTGCTATCAAACATCTAAGCTCAAGGGG
GAGGGCATGCGAAAAATACACATCCAAACCAGTGCTTCAGTACTTCGTAT
CGTCATGTTTGATATTGGCTAAAAATGACTTACAATGGGGCGATCGTCGC
TTCCATTCCTCGGCGGCGTCTCAATGATCCATGTCCATCGTCTTCTTCTT
CGACTCGGCGGCTGTCTTTTGTTTTTGCTCAAGTGCCTACGAGGCCACGG
TCCCCGCCGGGCGTCAAGCTCTCATCAAGACGGACCTCTCCATCGCTATT
CCTCCCAACACGTACGCGCGCATCGCCCCTCGATCCGGCCTGGCGGTGAA
GAAGATGATCGACGTCGGGGCGGGAGTTGTGGACTACGACTACCGCGGGC
CTGTTGGAGTGGTGCTCTTCAACCATGGGAGTGAAGACTTCAAGGTCCAA
AAGGGAGATCGTGTGGCTCAGCTCATCTTGGAGCGCATCTGCATGGCAGA
CATCGAGGAGGTGATACAAAGTGGTTTGCTTTCTGTAGTCATCCCATATA
TGTATGTAGGATTGCTTTCTCTCCAGGGGCCACGATCGAGGTAAACCAAG
GAGCGTTCTTCTGTCCTGCGTGCTTGGAAGGAGTACTATGGTGCGAAAGA
TTCACCAATCTGAACCTTTCATCCCTCGTCAACCTGTTTGTCGATTGTTA
AATACTCGCGAATGCGCGTGTTGTTACCAGTGACATAAGTTGAACGTACA
ACCTGGACCATCGAAAGGTTTCAGAACGCGAACATGTTCGAAGCGAGTGA
TTTCTCAACGTTGATATACTAGTCAGATTGAGCTCAACCTTCACGTATGC
ACGAGGACGAAGTTTTTGAATTGCATGTGGCGTGTTTTTTTTGCCAGGTG
ACAGAGCTCTCCGAAACAACAAGAGGCAGCGGAGGATTTGGCAGTACCGG
CGTTGAACAAGGCGCGCTTCAAACATCATCCACCGTGGCGAACGGGGCAA
AGAAAATCAAAGTGGTGGGGTCCGAGCCGGTGAGAGTAAAGTAGTTGGTG
CCCCAGGCATCCTTCATGTGCAGGTACCTACTTTGTCAGTACTTCACGTG
CGTGCCCGCAATCCTCACGTATGTGCTGCCTGAGAGAGTCAGCAATTGTA
GCTGTGTCGAATGTGTGTATTTTTCTGGCATGCATGCTGACCGCATTTGT
GGAAATGACAGGTCTCGAGAACGTCGTCCACAGTAGCGAGTGTGCTCAAG
CTAATCGACAGAGTTGACAAGCTGGATGTGGATGACGCTCCTACGCTTGT
CGCAAAGGTGAGCGCCACGCCGAATGCGTTCCTTGTGTTATGGGATTTGC
TCGCAAAATCCACAGCCGCGGGCTTGTTGATAACAACAAGAATGGCAGGC
GACTGCCAACTGA
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Coding sequence (CDS) from alignment at Scaffold_242:512142..515904+

>EsuBft569_2a-0001 ID=EsuBft569_2a-0001|Name=EsuBft569_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=717bp|location=Sequence derived from alignment at Scaffold_242:512142..515904+ (Ectocarpus subulatus male Bft15b)
ATGCGAGTCGGCTTTGCTCTCCACGCAGCGTTTGCCTCGAGCGCGAAGAC
TTCACGTCACGCTTTGTCCGCCGCTTACAGCATCTTGTCCAACGCGACCA
TGGCAGTGGGCGAGACGATGCAAGTCAAGAAGCTCTCGGAGAATGCCATT
ATGCCCGTTAGAGGCTCCGAACACGCTGCAGGGTTCGACCTCGCGAGTGC
CTACGAGGCCACGGTCCCCGCCGGGCGTCAAGCTCTCATCAAGACGGACC
TCTCCATCGCTATTCCTCCCAACACGTACGCGCGCATCGCCCCTCGATCC
GGCCTGGCGGTGAAGAAGATGATCGACGTCGGGGCGGGAGTTGTGGACTA
CGACTACCGCGGGCCTGTTGGAGTGGTGCTCTTCAACCATGGGAGTGAAG
ACTTCAAGGTCCAAAAGGGAGATCGTGTGGCTCAGCTCATCTTGGAGCGC
ATCTGCATGGCAGACATCGAGGAGGTGACAGAGCTCTCCGAAACAACAAG
AGGCAGCGGAGGATTTGGCAGTACCGGCGTTGAACAAGGCGCGCTTCAAA
CATCATCCACCGTGGCGAACGGGGCAAAGAAAATCAAAGTGGTGGGGTCC
GAGCCGGTCTCGAGAACGTCGTCCACAGTAGCGAGTGTGCTCAAGCTAAT
CGACAGAGTTGACAAGCTGGATGTGGATGACGCTCCTACGCTTGTCGCAA
AGGCGACTGCCAACTGA
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