EsuBft569_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft569_12a-0001
Unique Name	EsuBft569_12a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_242	contig	Scaffold_242:454287..458613 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft569_12
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	55
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-15_002470.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a	EsuBft569_12a	Ectocarpus subulatus male Bft15b	gene	Scaffold_242 454287..458613 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a-0001-exon	EsuBft569_12a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 454287..454589 -
EsuBft569_12a-0001-exon	agat-exon-10560	Ectocarpus subulatus male Bft15b	exon	Scaffold_242 458367..458613 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a-0001-exon	agat-three_prime_utr-18525	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_242 454287..454467 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a-0001-cds	EsuBft569_12a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_242 454468..454589 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a-0001-exon	agat-five_prime_utr-11785	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_242 458431..458613 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft569_12a-0001	EsuBft569_12	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_242 454468..458430 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_242:454287..458613-
coding sequence from alignment at Scaffold_242:454287..458613-

spliced messenger RNA

>EsuBft569_12a-0001 ID=EsuBft569_12a-0001|Name=EsuBft569_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=550bp|location=Sequence derived from alignment at Scaffold_242:454287..458613- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCACTACTCTGTACTGCACCACGGTGCACGTTTGCCCATACCCTACAAAC
CTCGCCATCCTGATGAGGCAAGCCATGAGCACCACGAACCAGCCCTGTTG
CTGGAAACAGGAATGGTTCCTGTCCAACACGTGAAACACAACATTGACCA
CAAGTAACGATGTCCTGATCGCCAAGAAGCGCTATGAGTGGCCAGGCTTC
TCCGACTGCGGAAGACATGCCAGCAAACGAGCTGCACGAAAACTCAGGTG
CACGAGACCTCGCGCCAATGCACGCTGCGCACGACGGCATCTTCCTGCCC
CTGCTTCCGCCGAAGGCACCCGTTCCCTTCGTGGCCATGCAGCCTGAAGC
GACTCCACAGCTCTTTTAGACGGAGTTCGAAACATCGGCTGTCCCTCTCT
CGTATGACAGATGCTGACTACACCAATAGCAGGAAGCACTGGAACTCGCG
AAGTTGGTCTGGCTGTTCCATCGGAAAAGAGCTTTGTGGGCTTAAGGTTT
TCATGTACCAGGCAGATAATCTCCCCTGAACGAGCTTGTTTTTGTACTGG

protein sequence of EsuBft569_12a-0001

>EsuBft569_12 ID=EsuBft569_12|Name=EsuBft569_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=61bp
MSGQASPTAEDMPANELHENSGARDLAPMHAAHDGIFLPLLPPKAPVPFV
AMQPEATPQLF

mRNA from alignment at Scaffold_242:454287..458613-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft569_12a-0001 ID=EsuBft569_12a-0001|Name=EsuBft569_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4327bp|location=Sequence derived from alignment at Scaffold_242:454287..458613- (Ectocarpus subulatus male Bft15b)
TCACTACTCTGTACTGCACCACGGTGCACGTTTGCCCATACCCTACAAAC
CTCGCCATCCTGATGAGGCAAGCCATGAGCACCACGAACCAGCCCTGTTG
CTGGAAACAGGAATGGTTCCTGTCCAACACGTGAAACACAACATTGACCA
CAAGTAACGATGTCCTGATCGCCAAGAAGCGCTATGAGTGGCCAGGCTTC
TCCGACTGCGGAAGACATGCCAGCAAACGAGCTGCACGAAAACTCAGGTG
GGCCATGCATCTGGGTCTGTTGAAGGCGTTGGTGGCTTTCGCGTTGAGAT
CGACTTCCTCGCGCGCTCTCTCTCTCTCTCTCTCTCGAACTTTGAACTAC
CACACACCTCTTGCCCGTTTATGAAACAGCTTGGATGCTGCGGCGCCTAC
ATCACGGCAGCCGTCAATGCAAAGTTGTAGGCGGTGAGGCGCGCGCCACT
TGCCGAGCGGTCGTAAAGTATTTTCGTGCTGAATTATGCGTGCGTTTCAG
CTGCACCTCCAGCCCCACACTGTCATATTCTCAAAAACTCGTCGGTGGTC
TTTCTTTCGGTCCTGATGGCGCCTTCGGCGTCTCCTTGAAAGCCACCACC
CTCTTATCCATACCAACCTTTTGATCTGACTCCCGTTTTGGTGTTGTGTG
TTGTGCCATGAGTGCCTCATGTTGGTTTTTCGTACATTGCTAGGTTTCGA
ACAATTTGACCGTTCAGTGCCCCATTGTTTCCTTCGGTAGCGAGAGACCC
ACAACGGCCCACACGTAGAAACAAGGGGAACAGTCTGCATCCTTGGATCG
AGAAACTACAGCGGTAGACTTCTTTACCCAGTGTACACTGAACATCGAAC
CAACCATCTTCCATGCGCAAGTCAGGGCGAATGGCTCGGTCGCCTTTCGC
GCGCCCGTCTTGTGCGGTGCGTGCGCCGGCTTCCGAAAGCACCAGTGCCG
TTCGCTCGTTACGTCCGTGGTATAGTAAACCCCCGGCCTTGGCGACCTTT
AGGGGGGGGTCTCGTTCTGAGCTCCCCCCGCCAGTCTCGGCTATCTTCGC
TCGGCGAGAGTGGGCGCGGCACGTCAACCTATGTTGTTTTCTCGTGAGCC
GCCGCCCTAGATCTTTGAGCAGACATTTTTGATGTTCAGTTGAAAGTCGT
GTTTTGTGTGCACACAGCAGCGTTTTGCCCTGTCTTGGACTACTACTGTA
CACGCCGTGCTAGTCACGAAAATCCTGCACCCAAGCCTTTGAATAAGTTT
TGGTTGCGGTACATTGGCAGCGTATTAGCGAAATATTGTGCTCGAACCGC
CAACCACTCATGTGACCAATCGCCGTGTGGTTCGTTACACCGACAATGTA
CACCGCAGCAGGGTTCTTCAACTTCCACGAAATAGTACGACGTGGCCGTT
AGTCTACGCAGCAAAATCGATTAAGCAAACATATGGGATAAAGTATTCAA
TCCGTGCTTTGGGGTTAGGGTTAAGGATAGGGTCTGCGTGCCCCCTGCCT
TTTTCTAGATAATCTTAAAATCTCTTCAAATCCCGCGTAGGCGGTCCACC
ATGGCACGCTACAGTGCCGGAAAGTGTGAGCCCGAATACGGGTGCTTTGA
AAAAAAAAAGAACCTTCTTCAACAAATTGAGCGGAACCAAAATATTCGTG
AGAAAGCTCTCGCCAGCAGCGATCGAATAAGCCTATCCACAGCGCGGGGT
TTTCGTTTTTGAGAAAGATATGGCTCCTTTACCATCAATGCAGAAGGCAC
TTCATCCCACAAGAATCGCCATGTCTCAACAACTACGGCGAACCCCGCAA
AAAAAATTGCAGATTTGCAAAGCTCTCTTTCAGAAGTATTTTACTGCGGC
AGAACCATACCCGAGCGTGGTGAAGAAGAACTTAAAAAAAAATCAAAATC
CTGTGAACAAAAAAAAGAAGCATTTCTCCAGATTCTTCACCTTGAATTTT
TGTCGTGGGGCAATATGATGATAACTCCAGGAGTAATTGAGCAACTCTGG
AAAAGATTACAGGAAAATGACCGTTAGGCCACTTGTTACGCTGTCTCTTT
TTGAGCTGTCCCTTTTCTCAAAAAGGGACAACTGACCAAAAACCACTTGT
TACGTGGTCTTTTTTTGCGTTTTTGAACCTCCCGAAAAGGGACAGCGAAA
AAAGATCACCCCATCCTGTCCCTTTTTGGGCAACTTTGTGACAGGGTAGC
CCTGTCCTTTTTATGTTGTCCTTTTTTTGAATCTCGCGACACCGTGGACA
CACCCACACACCCACCAGCATCTCCCATGTGGAAGTGGCTGCCGTCTCTG
GCGCTGCTCGCTGGCAGCAGCAGCGGCGCTTGCTTGACTCTAACCTTCAA
CAGCAGCCCGGGCTCTCTTCCGATGGCCGCCGCCGGTATGGATGCCCTGC
TGCCAGCAACGGCGTTGGCCGTGGCGTTGGTTGCGGTAGATGAGGTCCAA
CGCAACGACTTGTCGCAGGAGGACCTCCTGGAGGAGGATCCGGCCAACGA
CCTGCCCCGCGAGAGACTTCCGCGGTCGCAGAGACATAGGAAAGACGTGG
AGACATGCGCTTGGGCACAGCTGTTGGAGGATAAAGACCTCGAGGACAGC
ACGAGCATCACCGCGAAGCAGTTTCGAGTGGACTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCTCGAAACTGCTTCGCGGTGATGCTCGTGCTGT
CCTCGAGGTCTTTATCCTCCAACAGCTGTGCCCAAGCGCATGTCTCCACG
TCTTTCCTATGTCTCTGCGACCGCGGAAGTCTCTCGCGGGGCAGGTCGTT
GGCCGGATCCTCCTCCAGGAGGTCCTCCTGCGACAAGTCGTTGCGTTGGA
CCTCATCTACCGCAACCAACGCCACGGCCAACGCCGTTGCTGGCAGCAGG
GCATCCATACCGGCGGCGGCCATCGGAAGAGAGCCCGGGCTGCTGTTGAA
GGTTAGAGTCAAGCAATCGCCGCTGCTGCTGCCAGCGAGCAGCGCCAGAG
ACGGCAGCCACTTCCACATGGGAGATGCTGGTGGGTGTGTGGGTGTGTCC
ACGGTGTCGCGAGATTCAAAAAAAGGACAACATAAAAAGGACAGGGCTAC
CCTGTCACAAAGTTGCCCAAAAAGGGACAGGATGGGGTGATCTTTTTTCG
CTGTCCCTTTTCGGGAGGTTCAAAAACGCAAAAAAAGACCACGTAACAAG
TGGTTTTTGGTCAGTTGTCCCTTTTTGAGAAAAGGGACAGCTCAAAAAGA
GACAGCGTAACAAGTGGCCTTAGTGTTACATGTATATAAGGGCACATGTC
CACCTGGTGGTTCTAGTTTGTTTTCGTGTGCAATGGCATAGATGTCGTTC
GCGCCGGCGCCCACAGGTCCAACACCCCGGTTCGAGTCCAGCAAGCATTC
TCTCTAGTCTTTTTTTCCTGATCATATTTGTGTTTTATGTTAATTTTTCC
ATACGTTTATCTTGAAAAATGTATGCAATTTTCTTCGACCTCATCAAAAA
AAATTTGGTCACCGCGTCTTGTCGGTGCCATCACGGGCAATACGCACGTG
AAAATAGTGTCGAAAACCATGACTTTAGTCAAAAGTTATGGCCGGTCAAC
CAAAATCGGTCTCACACTTTCCGGCACTGTACAGTATCAAAGCCGGGAGC
CAGCGGGCAGCACCCAAACAGTTTTCCTCTTTGCGTCGCCTTGTGCTCCA
AATGCCCTGTTGCCCCCCTGTATTGAAGACAACTTTCCCGTCCACTTACG
TACTGCTGTCGTCTCTTTGTTCAGGTGCACGAGACCTCGCGCCAATGCAC
GCTGCGCACGACGGCATCTTCCTGCCCCTGCTTCCGCCGAAGGCACCCGT
TCCCTTCGTGGCCATGCAGCCTGAAGCGACTCCACAGCTCTTTTAGACGG
AGTTCGAAACATCGGCTGTCCCTCTCTCGTATGACAGATGCTGACTACAC
CAATAGCAGGAAGCACTGGAACTCGCGAAGTTGGTCTGGCTGTTCCATCG
GAAAAGAGCTTTGTGGGCTTAAGGTTTTCATGTACCAGGCAGATAATCTC
CCCTGAACGAGCTTGTTTTTGTACTGG

Coding sequence (CDS) from alignment at Scaffold_242:454287..458613-

>EsuBft569_12a-0001 ID=EsuBft569_12a-0001|Name=EsuBft569_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=186bp|location=Sequence derived from alignment at Scaffold_242:454287..458613- (Ectocarpus subulatus male Bft15b)
ATGAGTGGCCAGGCTTCTCCGACTGCGGAAGACATGCCAGCAAACGAGCT
GCACGAAAACTCAGGTGCACGAGACCTCGCGCCAATGCACGCTGCGCACG
ACGGCATCTTCCTGCCCCTGCTTCCGCCGAAGGCACCCGTTCCCTTCGTG
GCCATGCAGCCTGAAGCGACTCCACAGCTCTTTTAG