EsuBft569_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft569_10a-0001
Unique NameEsuBft569_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_242contigScaffold_242:466497..467191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft569_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length42
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft569_10aEsuBft569_10aEctocarpus subulatus male Bft15bgeneScaffold_242 466497..467191 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_10a-0001-exonagat-exon-10559Ectocarpus subulatus male Bft15bexonScaffold_242 466497..466916 -
EsuBft569_10a-0001-exonEsuBft569_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_242 467189..467191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_10a-0001-cdsEsuBft569_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_242 466497..466916 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft569_10a-0001EsuBft569_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_242 466497..467191 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft569_10a-0001 ID=EsuBft569_10a-0001|Name=EsuBft569_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=423bp|location=Sequence derived from alignment at Scaffold_242:466497..467191- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTTGCCAAGCCTCAGGCGAAAGCTACCCGGAAAAGATTTATCTAGG
GGTAAGCGCTTCGCCGGCCGAACTGCTCCGCTGCCGATCCGGCTCGGGGC
GTTGTGAGGATCTGGATGAGGAGATCGAGGAGGAAGCGAGAGGAGCGCCG
CCCATCGCCGTGAACTGGACCTTCGGAGAGGCCGTCGCGCTCGGCGACGA
TGTGACGCCCGGGCAGCACGCGCGCTTCCTGCGCAGCACGAACCGGCTCG
TTCTCGAGGACGCCGAGGCTGCGTACCACGCGTGCGGGCGGCGCGTCGAG
AGGGAAGGGGGCGTCGTGCTGTCCTCCATTAGCTTCACGTGCTGCGTTCG
GCCCGACCACGTGGAGGTACATAGTGTACCGTGCAATCGTGGCGGGTTGG
ACCCTCTGCACTCCCATGTGTAG
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protein sequence of EsuBft569_10a-0001

>EsuBft569_10 ID=EsuBft569_10|Name=EsuBft569_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=140bp
MVCQASGESYPEKIYLGVSASPAELLRCRSGSGRCEDLDEEIEEEARGAP
PIAVNWTFGEAVALGDDVTPGQHARFLRSTNRLVLEDAEAAYHACGRRVE
REGGVVLSSISFTCCVRPDHVEVHSVPCNRGGLDPLHSHV
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mRNA from alignment at Scaffold_242:466497..467191-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft569_10a-0001 ID=EsuBft569_10a-0001|Name=EsuBft569_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=695bp|location=Sequence derived from alignment at Scaffold_242:466497..467191- (Ectocarpus subulatus male Bft15b)
ATGGTAATAGGTACTTGTAGATAGGGCTTTGAAAATGTGTGGAAGGTTAA
CTTGTTAGAACAGGGTATCGATACGTGATGCACGCCCGGTCAACTGCTCG
CTCACGCTCAGAATTCTTGGCGAACCACGTCTTTGCGTACAGGTTGCAGT
CACCAGGAACTACAATACTGCGGTGCACTCTGAACGCCACGACCACCATC
CGGAAAGCTTCCGTGACTGCTTGATTCATTGATTCACCACCTCCCTGATT
TGTCTCACTCTGCGAACGCGTTTAGGTTTGCCAAGCCTCAGGCGAAAGCT
ACCCGGAAAAGATTTATCTAGGGGTAAGCGCTTCGCCGGCCGAACTGCTC
CGCTGCCGATCCGGCTCGGGGCGTTGTGAGGATCTGGATGAGGAGATCGA
GGAGGAAGCGAGAGGAGCGCCGCCCATCGCCGTGAACTGGACCTTCGGAG
AGGCCGTCGCGCTCGGCGACGATGTGACGCCCGGGCAGCACGCGCGCTTC
CTGCGCAGCACGAACCGGCTCGTTCTCGAGGACGCCGAGGCTGCGTACCA
CGCGTGCGGGCGGCGCGTCGAGAGGGAAGGGGGCGTCGTGCTGTCCTCCA
TTAGCTTCACGTGCTGCGTTCGGCCCGACCACGTGGAGGTACATAGTGTA
CCGTGCAATCGTGGCGGGTTGGACCCTCTGCACTCCCATGTGTAG
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Coding sequence (CDS) from alignment at Scaffold_242:466497..467191-

>EsuBft569_10a-0001 ID=EsuBft569_10a-0001|Name=EsuBft569_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=423bp|location=Sequence derived from alignment at Scaffold_242:466497..467191- (Ectocarpus subulatus male Bft15b)
ATGGTTTGCCAAGCCTCAGGCGAAAGCTACCCGGAAAAGATTTATCTAGG
GGTAAGCGCTTCGCCGGCCGAACTGCTCCGCTGCCGATCCGGCTCGGGGC
GTTGTGAGGATCTGGATGAGGAGATCGAGGAGGAAGCGAGAGGAGCGCCG
CCCATCGCCGTGAACTGGACCTTCGGAGAGGCCGTCGCGCTCGGCGACGA
TGTGACGCCCGGGCAGCACGCGCGCTTCCTGCGCAGCACGAACCGGCTCG
TTCTCGAGGACGCCGAGGCTGCGTACCACGCGTGCGGGCGGCGCGTCGAG
AGGGAAGGGGGCGTCGTGCTGTCCTCCATTAGCTTCACGTGCTGCGTTCG
GCCCGACCACGTGGAGGTACATAGTGTACCGTGCAATCGTGGCGGGTTGG
ACCCTCTGCACTCCCATGTGTAG
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