Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft5611_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 145 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1450bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTTGCTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTCGCACTTAG
GGTTCTCGGTCTGAAGATTCTCGCGCCGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAACAAACCTAGGGCCGTGTACATAGTTCCCGT
CCACCTTCTGACGGTGTCTGCCTCCGCGCACAAAAAATGAGATGGGCATC
GCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTACATTTTTTCGCCTG
ACCCCATCAGTGCCGACCCAACTACACCACCACGCGCATGCCTCGCGGCG
GATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTA
GCCCTGCTCGCCAGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGC
AAACGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAGCCTGCCTGAGGTAT
TTTTATCGCGAGAAGGGTACAAACAGCCTAACATCTATGTTGAGGATGGT
GCTTTTCGTTGAGGATGAAACGCACGCGGAAATGTTTCCAGCAACTGCAA
AATTATTTTTGGACAGAAACGTTTGTGTAGTAGAGGGGAGCACCCCGCGG
CGATTAGCTGTTAGTGGTGCCACCGGGGATGCCGTCTCTATCGAGCCGGT
ATTATACTTGGAATATTACATGCACGTATGGGTGTTCCTTCTTCTTAGCA
ACAACAAGAACATAATAGTTTATTACGGTGAACACTTGCGCAGTAGTTAG
GAGTAGTAATACATACTCGAGTATTGGTTGTGTCCTCTGTGGCGGTGGAT
TTGTACTACGACATACTCGGAGTACTAATAATACGGAGTATTCTCGTCGT
CTCTGTCTTGCGCTTGATGTTATTGTGCCTCTTCTTTTTGTTCTCCTCCG
AGTGTCATACTACTACTACTACTACTACTACTACTACTACTACTACTAAT
AATAATACTAATAATAATAATAATCGGTTGAACGGCGCTAGATAGACAAA
AAATGTTCTTTCATCATTTCGCGTGGTCGCAGGCTTCCTCGTTCTCCTCC
TGCTGCTGCTGTGTAACAACGGGCGGAATTCCAACTCCATCTAGTTGTGT
AGTAGTAGAAGAGCCCCTGCCCCCACGAACGAGTACTAACCCGAAGACCA
AGCTGCTCGAAAACTACCACACGCAGCAACAACAACGGCCAAACCGACGG
ACAGACAGGCTGAGACAGACATTTGATATTCTTCGTTTCAAGTTCCTCCA
AACGAAATCTCACGCTCGCTTGTTAAAAGATATAGGCAAAAAACAAATAG
AAAGGGGTATCCTCACATCCAATCTTCATTCACGTTAAAAACTACGTGTT
TGCAGCTGTGTTTGACTTCATCAATCAATCGAGAATCCCCCCGCTCCTCC back to topprotein sequence of EsuBft5611_2a-0001 >EsuBft5611_2 ID=EsuBft5611_2|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=50bp
MRWASLPTPTARGPRIYIFSPDPISADPTTPPRACLAADMRSSKKVSVIP back to topmRNA from alignment at Scaffold_265:486..1935+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1450bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)
GTTGCTGTCCTTCCCAGTCGGTTCCTCGCTTTCTCCCTCGTCGCACTTAG
GGTTCTCGGTCTGAAGATTCTCGCGCCGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAACAAACCTAGGGCCGTGTACATAGTTCCCGT
CCACCTTCTGACGGTGTCTGCCTCCGCGCACAAAAAATGAGATGGGCATC
GCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTACATTTTTTCGCCTG
ACCCCATCAGTGCCGACCCAACTACACCACCACGCGCATGCCTCGCGGCG
GATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCTTGAGGGTGAGTCTA
GCCCTGCTCGCCAGAAAGACCCCCCCCTTCGCTACAACCCATGTCTAAGC
AAACGCTTGTCGAGGAGCGAGGGGAAGAAGGGAGAGCCTGCCTGAGGTAT
TTTTATCGCGAGAAGGGTACAAACAGCCTAACATCTATGTTGAGGATGGT
GCTTTTCGTTGAGGATGAAACGCACGCGGAAATGTTTCCAGCAACTGCAA
AATTATTTTTGGACAGAAACGTTTGTGTAGTAGAGGGGAGCACCCCGCGG
CGATTAGCTGTTAGTGGTGCCACCGGGGATGCCGTCTCTATCGAGCCGGT
ATTATACTTGGAATATTACATGCACGTATGGGTGTTCCTTCTTCTTAGCA
ACAACAAGAACATAATAGTTTATTACGGTGAACACTTGCGCAGTAGTTAG
GAGTAGTAATACATACTCGAGTATTGGTTGTGTCCTCTGTGGCGGTGGAT
TTGTACTACGACATACTCGGAGTACTAATAATACGGAGTATTCTCGTCGT
CTCTGTCTTGCGCTTGATGTTATTGTGCCTCTTCTTTTTGTTCTCCTCCG
AGTGTCATACTACTACTACTACTACTACTACTACTACTACTACTACTAAT
AATAATACTAATAATAATAATAATCGGTTGAACGGCGCTAGATAGACAAA
AAATGTTCTTTCATCATTTCGCGTGGTCGCAGGCTTCCTCGTTCTCCTCC
TGCTGCTGCTGTGTAACAACGGGCGGAATTCCAACTCCATCTAGTTGTGT
AGTAGTAGAAGAGCCCCTGCCCCCACGAACGAGTACTAACCCGAAGACCA
AGCTGCTCGAAAACTACCACACGCAGCAACAACAACGGCCAAACCGACGG
ACAGACAGGCTGAGACAGACATTTGATATTCTTCGTTTCAAGTTCCTCCA
AACGAAATCTCACGCTCGCTTGTTAAAAGATATAGGCAAAAAACAAATAG
AAAGGGGTATCCTCACATCCAATCTTCATTCACGTTAAAAACTACGTGTT
TGCAGCTGTGTTTGACTTCATCAATCAATCGAGAATCCCCCCGCTCCTCC
back to topCoding sequence (CDS) from alignment at Scaffold_265:486..1935+ >EsuBft5611_2a-0001 ID=EsuBft5611_2a-0001|Name=EsuBft5611_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=153bp|location=Sequence derived from alignment at Scaffold_265:486..1935+ (Ectocarpus subulatus male Bft15b)
ATGAGATGGGCATCGCTGCCTACGCCGACGGCCAGAGGCCCGCGCATCTA
CATTTTTTCGCCTGACCCCATCAGTGCCGACCCAACTACACCACCACGCG
CATGCCTCGCGGCGGATATGCGCAGCAGCAAGAAGGTTTCGGTCATCCCT
TGA back to top
|