EsuBft559_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft559_10a-0001
Unique NameEsuBft559_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_230contigScaffold_230:249771..254742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FT56
ProteomeIdEsuBft559_10
Protein domainsIPR005636
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSignalP-TM
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR21392
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Notedtw domain-containing protein 2 os:homo sapiens gn:dtwd2 pe:1 sv:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1788
Hectar predicted targeting categorysignal peptide
Evalue8.87e-245
EggNOG OGsCOG3148@1|root,KOG4382@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_003520.1
Date last modified2016-06-13
Date creation2016-06-13
DescriptionDTW
COG categoryU
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10aEsuBft559_10aEctocarpus subulatus male Bft15bgeneScaffold_230 249771..254742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10a-0001EsuBft559_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_230 249834..254361 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10a-0001-exonagat-exon-74114Ectocarpus subulatus male Bft15bexonScaffold_230 249771..250205 +
EsuBft559_10a-0001-exonEsuBft559_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_230 250866..250951 +
EsuBft559_10a-0001-exonagat-exon-74117Ectocarpus subulatus male Bft15bexonScaffold_230 251370..251598 +
EsuBft559_10a-0001-exonagat-exon-74115Ectocarpus subulatus male Bft15bexonScaffold_230 252907..253386 +
EsuBft559_10a-0001-exonagat-exon-74116Ectocarpus subulatus male Bft15bexonScaffold_230 254185..254742 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10a-0001-exonagat-five_prime_utr-11661Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_230 249771..249833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10a-0001-cdsEsuBft559_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_230 249834..250205 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft559_10a-0001-exonagat-three_prime_utr-18364Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_230 254362..254742 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft559_10a-0001 ID=EsuBft559_10a-0001|Name=EsuBft559_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1788bp|location=Sequence derived from alignment at Scaffold_230:249771..254742+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CTGTGCCATGTGCATGCCGTTTGCGCGCGTGTGTGTGCAAGAAAGCGGCC
CGTCGATTGAAGAATGATCTTGGTCCGGTTGATGCTGGCGCTTGCCGCCC
AGGTCGTAGCGGTAGCGGGACAGAAGAGCGGTGCATCTGAGCGCCTCCGA
GCGCGTTCTTCATCAGCATCTGCGCTGCGGTTATTGTTGACACCGCCTGG
CTCTTCCGGCAGAAGCTCAGATGCCTTGTTCTGCTGCCCGACGACCCTTA
CTCCTTTCTTGGCCGTGAGGCGAAGAAAACCTCGCCGGGCGGCTTGCGCA
GCCAGAGAGATCGGTAATGATGCACCATCACAGGCCGTTCAGTCGTACTA
CAAGCGGAGGCGGGAGGCCATGGGCGCGTGGACGGAGGAGAGGCGAGGCA
GGGACCTGTGCGAGCGGTGTCGGAGGGCTCGAGAGATGTGCCTGTGCTCT
TCCTTGCCGGCTGAAGCTATGCCAACGTCTACTCGGTTCGTAATATTGCA
GCATCCAGCGGAAACTAAGAAGCGTGTCACCGGGACCGTTCCTCTGATCC
TCCACTGCCTCGCCGACTGCACCCGCGTGGTCATGCGGTACGACTACAGC
GAGGAAGACGTCAGAAAAGCCCTCGGCGTCGAGTTGGCAATAGACCGCTC
TCCGGAACGCGTCTCGGAAAGGTCCTCGAGGCGGGAAAACAGCGCCAGCA
CAGGCACTCCACTTCTGCTCTTCCCCTGCCCGGGCGCAGAATACCTTGAG
GACATCGCCGCTTCCCGAGATCAATCTGCCCCGTCGGCACAGCCCTTCCC
ACCAACACCAGCGGCAGCCGCAGCAGCGGCAGAACTAGCAACAGGAGCAG
GGGGAGGAGAGGTGGTGGTGCTCATCGACGGCACCTGGTCGCAGGCGAAG
CAGATCTTGTCCAGGTATCCTTCCCTCCTCCGCCCGAGAATGGCAACCAC
GCCCGCCCAACAAAAGACTAGGGAATTGGGTGCCTCCGCTGGTGGCGTTC
CCGTCGCCACCGTTGGGGGTTCAGGAGAGGCCGAAGGCGGTGGTGGTAGT
GATGAGAGATGGGACGGGAGTGAGCAAGGGTCGGGGGGGAGGGAGGCGGA
GCCAACTGAGGACGGAGCGTTGTGCAGGGCGGTGAAGTTTCGGTGCGCGG
GAGTCAGCGGCTACGGCTTCAGGCGGGAGCCGGCGAAAGAATGCCTGTCC
ACCTTGGAAAGCGTTGCTTACACGCTGGAGGTACTGGAGGGGACCCCGCA
AGGGCTGGCGGCAGCGGCCTTCCTCCGCAAGGCGTTCAAGACGATGGTAT
CGATGCAGCTATCTCGGGCCGACGCGGGGGGTCGCCGGCCCCGATTTGTG
AACCGAAAGGAGAGAACGACGAATCGGAGGTCGACACCCAAGAAGGGAAT
TCTTTGAGACTCGGGCCTGCTTGCTCCCCGGCCTCCTGTAGAAGCTGCTT
CTACTGTAGCCTGTTGAAGTCTTCGTGTTATTCCTTTGGGATGTGCTATT
CTCGCCGCTTCAAATACGAGCTGTGTTGCTCGGAATGGGTGGGATGTGAA
CTCTGTACGATGTATGTACACCTTGGCCAAGGATGGGGGCGACCCGAGAA
AAATATATCTCAACAGCTACTCACTGTTGGAATGTTGGAGGCACACCATC
CTCTATCTGGTATTCTCGAAGTGTATTGGAAAAGGTGTAGACCCAACCAG
GTCTCACAAACGAGGGATGGGTGCTGTAAAGTAGGCGTGAGTGGTCACAG
ACAGGAAAGTCAGGCAGACGGCGGACAAACAAACCGTT
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protein sequence of EsuBft559_10a-0001

>EsuBft559_10 ID=EsuBft559_10|Name=EsuBft559_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=447bp
MILVRLMLALAAQVVAVAGQKSGASERLRARSSSASALRLLLTPPGSSGR
SSDALFCCPTTLTPFLAVRRRKPRRAACAAREIGNDAPSQAVQSYYKRRR
EAMGAWTEERRGRDLCERCRRAREMCLCSSLPAEAMPTSTRFVILQHPAE
TKKRVTGTVPLILHCLADCTRVVMRYDYSEEDVRKALGVELAIDRSPERV
SERSSRRENSASTGTPLLLFPCPGAEYLEDIAASRDQSAPSAQPFPPTPA
AAAAAAELATGAGGGEVVVLIDGTWSQAKQILSRYPSLLRPRMATTPAQQ
KTRELGASAGGVPVATVGGSGEAEGGGGSDERWDGSEQGSGGREAEPTED
GALCRAVKFRCAGVSGYGFRREPAKECLSTLESVAYTLEVLEGTPQGLAA
AAFLRKAFKTMVSMQLSRADAGGRRPRFVNRKERTTNRRSTPKKGIL
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mRNA from alignment at Scaffold_230:249771..254742+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft559_10a-0001 ID=EsuBft559_10a-0001|Name=EsuBft559_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4972bp|location=Sequence derived from alignment at Scaffold_230:249771..254742+ (Ectocarpus subulatus male Bft15b)
CTGTGCCATGTGCATGCCGTTTGCGCGCGTGTGTGTGCAAGAAAGCGGCC CGTCGATTGAAGAATGATCTTGGTCCGGTTGATGCTGGCGCTTGCCGCCC AGGTCGTAGCGGTAGCGGGACAGAAGAGCGGTGCATCTGAGCGCCTCCGA GCGCGTTCTTCATCAGCATCTGCGCTGCGGTTATTGTTGACACCGCCTGG CTCTTCCGGCAGAAGCTCAGATGCCTTGTTCTGCTGCCCGACGACCCTTA CTCCTTTCTTGGCCGTGAGGCGAAGAAAACCTCGCCGGGCGGCTTGCGCA GCCAGAGAGATCGGTAATGATGCACCATCACAGGCCGTTCAGTCGTACTA CAAGCGGAGGCGGGAGGCCATGGGCGCGTGGACGGAGGAGAGGCGAGGCA GGGACCTGTGCGAGCGGTGTCGGAGGGCTCGAGAGGTCAGCAACCGCTAT TTGTGTGCAGCTCTAGGCGTTCCTTCGGTCTACCACTGCTGTTTCTCCAC TGGAGGTGTGCTGCGGCAACCTAAGCTCCTACTCTGCAATTACGTAGTTG CGCCCGTGTGACGGCTGCTCCCGAGAGCAAAAGTTCAGTCCCGTCGACTG CATACTTCCTTGATGGCAATCGAGCACCAGTTTTCGCCTCATTGTTCTCC AGTAGCCATGCATCGTTGCCTTTGAGCATGGTAGTGTTCTACACAGAGTG CGGGCCCGCTCGCAAGAACATGTCCTCAATACATCGAAGCTCAGATTCAC GAAAGAAATAGGAGTAACGGCGCAAGACCCTGGTGTGGTAGCATAGCACT AGCCCGTCCTCAAGCCATCGAGAAAATGGAAGGCTTTGAGCCTAACTCAC AATAGGTATTGCTCAAGAGCGGGCCAGCACTGCTGAAAGTGTTTTGGACA ACCCCCGGGTCCAAGTCTTGTTGCCGTTGGATTGCTCTTGTCGGCTTGCT CGATGCTGTTCCCGGCACGTTCATCCTACAGTTGGCCTACAGTAGTCGCT GTAGTGGCGTGTCCAGAGGTGACCAATTCCTTTGTCTGCACTCCAACTCT GCCCGCATCACTCTTTTCCCTCTGCCTGTTTGTCGACCGTGACAGATGTG CCTGTGCTCTTCCTTGCCGGCTGAAGCTATGCCAACGTCTACTCGGTTCG TAATATTGCAGCATCCAGCGGAAACTAAGAAGTGAGTCCGTCGCGGTCTA GCGTTGTTGTTGATCCCAGCACTCGGAGAACGCGTACCACGCCACCACCC CGCACAGCTCATCAGGCAGGAGAAAAGGGGGTTGTAAATACGCCACCTAG TGCCTTCAGTGTACACTAGCCAATGTCGCCCTTCACAGCACGTTTCTCCT GGTGCACCGTTTATCTTCGAAAAACGATTCCCGAGGGAGGCTCGCACTTT CAACAGGCGCTGAAGGACCGTGTCATACTCGGCGATTTTTCTTCAAATCT CCCAATTTTCGAAGTCCGTTGACCGTTGAACCTCAAATTTGCGGCCGAGG AAAAACTTTGGAAATTTTAAAGATTTGGAAGCAAAACGCTGTGCACAAAA CGCGGCCCTAAACCAACGTTTTTGTCTTTTTTTCCCTTTTCTTCGTCAGG CGTGTCACCGGGACCGTTCCTCTGATCCTCCACTGCCTCGCCGACTGCAC CCGCGTGGTCATGCGGTACGACTACAGCGAGGAAGACGTCAGAAAAGCCC TCGGCGTCGAGTTGGCAATAGACCGCTCTCCGGAACGCGTCTCGGAAAGG TCCTCGAGGCGGGAAAACAGCGCCAGCACAGGCACTCCACTTCTGCTCTT CCCCTGCCCGGGCGCAGAATACCTTGAGGTGAAGTGGTGGCAGACGTTAA CATTTGGCCGTGATTGTTCTAATTTCCGCTGTGACGAGCGAATGGTGCGT CGTTGTCGTTTTCCGGAAAATAGGGTGTTCTGTTTCGTTATATCCCCTTG GGAACATTTTCGTTTTGTCTCAGGACAGCATGCGGGGCGGGTGGGTGAGT GGAAACCGTGCATCTTGCGCCGAGCGTCCGGCGTCTTGTCACTTTCGTTC CACAGCGAAACCTGTCCACGAGATACAGCAGGAGAGGCGGACAGAAAAAC GAGAGCGTGCCCAATCGACAACGTTGGGAAGCAGCGCACATCCTCCCTCG AACAACGTTTCTCGAGCACGCGGAAGTGTTGCCATGCTCGTGTCGCATTG CCGAGTTGTGGGTGGGACTGTCATTTTATCTCGTGCCCAATTTTTTTTCT AATACGTAGCGGCTACGGTTTAACATAATGTGTTTAACAGTGAGTCCGGG GTTAACAGAGGTGAATCGGCTTGGCACGACCAAAATCGGTTAAACAGAAA ATTTGTCTTATTTCTGAGATTTTGTGTTAAATCGAGCTTTTGGAGGTCTC GCCACGTTAATGAGTGGTTCGTCCAGTGGGTGATTGGGTAGATTTTCTCT TGGATGCTTGAGCATCCATGGGCTCGTGTTGTAGTTCCACAAGAGCTGCG AGTAGCAGCACAACTAGGACAAGGCAACGACACTACAGAGGTCTGACGCG TGATTTGTTTCCCAACACTTTCTACTAAGAGCGTGATCCAACACTTTCTA CCAAGAGCGTACATGTGGTCCATATTGCTTGCCAACCAACAGATAAAGCG GTGTGCGGAGCTAGCCCAACGGGTGGGTGCTGCCTGCGTTATGTGACATG AATGACATGCTCTCCATCAACTCTCACGGCACATACTGCTGTTGTTGGGA CGACTGGGTCCATGTGTCACGGCCTTTCGTTTTGGCTACAGTTTAACATT TTGTCATGTTTAACCGTAGCCAAAACGGTTTAACAGAAGTGCCGATGTAA GAGATGGATTTTGGCTTGTCACGACCCTATGTTAAACAGTAGCCGCTACT GTACTACCTGTGCCCACAGAAAGTCGTCGTCGTTAGTGCTGTGGAGCAAC CGGGTATTGTTGTAGATGTTTCGCTTCTGGTTCACGCTAACAGGGGCAAC AGGAAGAGCACATCCCAACAATACTCATCGCCCTCGTTCGAAACGCCTGG AATTGCAAAAAGGTGCGTATCAGTGGTTCCACCTAGTCGCACATATCAAT ATTTCCACCTCTCTCTTCATGGCACACGGTGGGCAGGACATCGCCGCTTC CCGAGATCAATCTGCCCCGTCGGCACAGCCCTTCCCACCAACACCAGCGG CAGCCGCAGCAGCGGCAGAACTAGCAACAGGAGCAGGGGGAGGAGAGGTG GTGGTGCTCATCGACGGCACCTGGTCGCAGGCGAAGCAGATCTTGTCCAG GTATCCTTCCCTCCTCCGCCCGAGAATGGCAACCACGCCCGCCCAACAAA AGACTAGGGAATTGGGTGCCTCCGCTGGTGGCGTTCCCGTCGCCACCGTT GGGGGTTCAGGAGAGGCCGAAGGCGGTGGTGGTAGTGATGAGAGATGGGA CGGGAGTGAGCAAGGGTCGGGGGGGAGGGAGGCGGAGCCAACTGAGGACG GAGCGTTGTGCAGGGCGGTGAAGTTTCGGTGCGCGGGAGTCAGCGGCTAC GGCTTCAGGCGGGAGCCGGCGAAAGAATGCCTGTCCACCTTGGAAAGCGT TGCTTACACGCTGGAGGTATGTTTTTCTGGGCGGCGTCACGAAGCAATGC CCGACCGTAGTTCTCACGTGTCTCTTCCTTTTGATCCAGTCAGCGAACCA GCGCTCATCAACTGGCCCGAGGAAACGCTTCGGTCCCAACGCGTACGCGA AAAGGCTTGCTCTTGTCTTGTGCTTGCGCCTCGTCCCTAGCCCGGCGCTG CTGGTGCGCTTAAGCCTGAGAAGTGAATGAGGTGCATGCGCTCCACCGAT TGGCGTATCACCGATTGAGATGTTGCTTTTCTCAGACGTCTCACCAGCTG AGGCGTACTCCCCCTGTCTCCCGCCAGCACACCGGGGTAAGAAAGGAATA GGCCCGATAAATTCAACGGCTGAACTTGTAGCTCCTCGCGCATTGTGATG ACGGCTGTAGCTTCATTAGCACACAGCTGCACTTTCTCTCTAGCTGAACG CTTTTTTTGTCACTGATTTTGGAACAAATGCATCGTCCACGTTGTCCTGA GGGGGACTCCGTACATGCTTGGGATGATGCGCATCGCTCTGGAGAGTTAC GACCACGTTTCATTCCTACAGCATGGCCTTCTGCTGCAAAGCTAGCGAAT TAGTTTCTCATCCCTCCTCACCGTCGTCGAGGAGGACGGGGGCGTGCGAT ATTGTCCGCACACCAACCGCACCCAACCAAAGTGGAAAAGTTGAAACCTA TGGAGGCTCCTGATATGTTAAACTACCCGCGCATATTTGGTTTGTGCAAA CTGAGTTGGAGCAAATTAATGGGTGCAATGTTCCATCGATTCCACGGGCG CGCGCGACGTGCAGGTACTGGAGGGGACCCCGCAAGGGCTGGCGGCAGCG GCCTTCCTCCGCAAGGCGTTCAAGACGATGGTATCGATGCAGCTATCTCG GGCCGACGCGGGGGGTCGCCGGCCCCGATTTGTGAACCGAAAGGAGAGAA CGACGAATCGGAGGTCGACACCCAAGAAGGGAATTCTTTGAGACTCGGGC CTGCTTGCTCCCCGGCCTCCTGTAGAAGCTGCTTCTACTGTAGCCTGTTG AAGTCTTCGTGTTATTCCTTTGGGATGTGCTATTCTCGCCGCTTCAAATA CGAGCTGTGTTGCTCGGAATGGGTGGGATGTGAACTCTGTACGATGTATG TACACCTTGGCCAAGGATGGGGGCGACCCGAGAAAAATATATCTCAACAG CTACTCACTGTTGGAATGTTGGAGGCACACCATCCTCTATCTGGTATTCT CGAAGTGTATTGGAAAAGGTGTAGACCCAACCAGGTCTCACAAACGAGGG ATGGGTGCTGTAAAGTAGGCGTGAGTGGTCACAGACAGGAAAGTCAGGCA GACGGCGGACAAACAAACCGTT
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Coding sequence (CDS) from alignment at Scaffold_230:249771..254742+

>EsuBft559_10a-0001 ID=EsuBft559_10a-0001|Name=EsuBft559_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1344bp|location=Sequence derived from alignment at Scaffold_230:249771..254742+ (Ectocarpus subulatus male Bft15b)
ATGATCTTGGTCCGGTTGATGCTGGCGCTTGCCGCCCAGGTCGTAGCGGT
AGCGGGACAGAAGAGCGGTGCATCTGAGCGCCTCCGAGCGCGTTCTTCAT
CAGCATCTGCGCTGCGGTTATTGTTGACACCGCCTGGCTCTTCCGGCAGA
AGCTCAGATGCCTTGTTCTGCTGCCCGACGACCCTTACTCCTTTCTTGGC
CGTGAGGCGAAGAAAACCTCGCCGGGCGGCTTGCGCAGCCAGAGAGATCG
GTAATGATGCACCATCACAGGCCGTTCAGTCGTACTACAAGCGGAGGCGG
GAGGCCATGGGCGCGTGGACGGAGGAGAGGCGAGGCAGGGACCTGTGCGA
GCGGTGTCGGAGGGCTCGAGAGATGTGCCTGTGCTCTTCCTTGCCGGCTG
AAGCTATGCCAACGTCTACTCGGTTCGTAATATTGCAGCATCCAGCGGAA
ACTAAGAAGCGTGTCACCGGGACCGTTCCTCTGATCCTCCACTGCCTCGC
CGACTGCACCCGCGTGGTCATGCGGTACGACTACAGCGAGGAAGACGTCA
GAAAAGCCCTCGGCGTCGAGTTGGCAATAGACCGCTCTCCGGAACGCGTC
TCGGAAAGGTCCTCGAGGCGGGAAAACAGCGCCAGCACAGGCACTCCACT
TCTGCTCTTCCCCTGCCCGGGCGCAGAATACCTTGAGGACATCGCCGCTT
CCCGAGATCAATCTGCCCCGTCGGCACAGCCCTTCCCACCAACACCAGCG
GCAGCCGCAGCAGCGGCAGAACTAGCAACAGGAGCAGGGGGAGGAGAGGT
GGTGGTGCTCATCGACGGCACCTGGTCGCAGGCGAAGCAGATCTTGTCCA
GGTATCCTTCCCTCCTCCGCCCGAGAATGGCAACCACGCCCGCCCAACAA
AAGACTAGGGAATTGGGTGCCTCCGCTGGTGGCGTTCCCGTCGCCACCGT
TGGGGGTTCAGGAGAGGCCGAAGGCGGTGGTGGTAGTGATGAGAGATGGG
ACGGGAGTGAGCAAGGGTCGGGGGGGAGGGAGGCGGAGCCAACTGAGGAC
GGAGCGTTGTGCAGGGCGGTGAAGTTTCGGTGCGCGGGAGTCAGCGGCTA
CGGCTTCAGGCGGGAGCCGGCGAAAGAATGCCTGTCCACCTTGGAAAGCG
TTGCTTACACGCTGGAGGTACTGGAGGGGACCCCGCAAGGGCTGGCGGCA
GCGGCCTTCCTCCGCAAGGCGTTCAAGACGATGGTATCGATGCAGCTATC
TCGGGCCGACGCGGGGGGTCGCCGGCCCCGATTTGTGAACCGAAAGGAGA
GAACGACGAATCGGAGGTCGACACCCAAGAAGGGAATTCTTTGA
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