EsuBft555_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft555_9a-0001
Unique NameEsuBft555_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:100195..101571 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft555_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length80
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9aEsuBft555_9aEctocarpus subulatus male Bft15bgeneScaffold_581 100195..101571 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9a-0001EsuBft555_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 100390..101374 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9a-0001-exonEsuBft555_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 100195..100665 -
EsuBft555_9a-0001-exonagat-exon-37850Ectocarpus subulatus male Bft15bexonScaffold_581 100967..101004 -
EsuBft555_9a-0001-exonagat-exon-37851Ectocarpus subulatus male Bft15bexonScaffold_581 101281..101571 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9a-0001-exonagat-three_prime_utr-18321Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 100195..100389 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9a-0001-cdsEsuBft555_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 100390..100665 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_9a-0001-exonagat-five_prime_utr-11633Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_581 101375..101571 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft555_9a-0001 ID=EsuBft555_9a-0001|Name=EsuBft555_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=800bp|location=Sequence derived from alignment at Scaffold_581:100195..101571- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCTAGCCTTAGGAGTTTTCGCCCAAGCCCTTATTGATCACTCCCCATT
GCCAGTAGAAAAGCATTCCCGCTCGTCCCTGCTGTGTGCAGCTTCATCAC
GAGGTCAAGGTTCCCCGCAGCCGCGGCATACTTCAACGGAGTAAGAAGCC
ATTCCGCTCATTCCTCTACAGCTGACCCGGCGCAAACGAGGTCAAAGATG
GCACCCTCTGCCCCATTCAGGATGGTCCTGCCCTGCCCGGGCTGTACGCG
TGGTTCTTGGGTGGTCATGACCTGCGACATAGCACACAGAAGGTTGGAGT
TAGTTCTGGTTGAGATATCGTCAAATAAGGCCACCGCCGGTCGATTCCAC
GTCACTGGCACCGAAGGAGGGGCTACGCGGATAGCGCACCGCTTGCGGTG
TGTTCTTCCCATGGCACAGATAGGTGAGGGGGGGGAAGTGAACAGCGATG
AAGGGAGGGCTGGACACTCGGACCACAGGGGTGGCGGTGGTTCTAAGGGC
GGTGGGATGGATGAGTTGCCGACGGGAGGGGATGAGTCGGCGGCTAAAGT
GCTGTCAGTGAAAGGGGAAGCGGTGACGGAGAGACCTCGGCAGGAAGGGA
AATGAAGGTCGGGTGGAGACGTCGAAGTTGGAGACTCACGTCAGACAAGG
GAAGTGCTATCTAAGAGTGTACAGCAGACATTCGACGATGCACAACGGAC
AGAGGCTGAGGTCTCTGGGGGAAAGGGTGGAAGGCCTGGGGGCAAGTGGG
GTTATGAGGGTATTGCGCACGCTGGGGGGGGGAGTGTGTCGCGCAAGGGT
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protein sequence of EsuBft555_9a-0001

>EsuBft555_9 ID=EsuBft555_9|Name=EsuBft555_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=135bp
MAPSAPFRMVLPCPGCTRGSWVVMTCDIAHRRLELVLVEISSNKATAGRF
HVTGTEGGATRIAHRLRCVLPMAQIGEGGEVNSDEGRAGHSDHRGGGGSK
GGGMDELPTGGDESAAKVLSVKGEAVTERPRQEGK
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mRNA from alignment at Scaffold_581:100195..101571-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft555_9a-0001 ID=EsuBft555_9a-0001|Name=EsuBft555_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1377bp|location=Sequence derived from alignment at Scaffold_581:100195..101571- (Ectocarpus subulatus male Bft15b)
TTCCTAGCCTTAGGAGTTTTCGCCCAAGCCCTTATTGATCACTCCCCATT
GCCAGTAGAAAAGCATTCCCGCTCGTCCCTGCTGTGTGCAGCTTCATCAC
GAGGTCAAGGTTCCCCGCAGCCGCGGCATACTTCAACGGAGTAAGAAGCC
ATTCCGCTCATTCCTCTACAGCTGACCCGGCGCAAACGAGGTCAAAGATG
GCACCCTCTGCCCCATTCAGGATGGTCCTGCCCTGCCCGGGCTGTACGCG
TGGTTCTTGGGTGGTCATGACCTGCGACATAGCACACAGAAGTGGAGCAC
CGATTCTGAGACCGGTTAAGAACCTCGTACATACCTGGATAGCGGCCTTG
TTGTAGCCCGTAAGAGGACAGACCTACAGTAAGGGCCTCACCCTCGGCCA
AACAAAACCTTTCCGCCATATCTGTGGCTGTAAAAACTTCTGATGTAGTG
ACGTGCAGTAAGTCAACCCTAGTTTAGGTCAGGGTAAGAAGACTTGGGGT
AGGTTGATCCCAGTATAAATGTCGAGGCGTGATGGAATGGACTTGAAAAT
GATGGCTCTGGGAGCAGGGTTGGAGTTAGTTCTGGTTGAGATATCGTCAA
ATAAGGTAATGAAAAGTGTATGAACTCAATACTAGAATTGACGAGGTGTG
GGTTTATGGTTGGAATGATGAGCTATTGAGGGAATTGCAGTTAGTTGAGA
GAAAGTGAGAGAGAGTTGGAGAGAAAGTGAACGGCGCAATTAGCTCGGGT
CAGCTAATGTCGCGTGCCCCCCTTTTTCAGTGTTCAATTTCCCTGCTGTT
CCCGGCCCACGAAGGCCTTAGAAACACACTTTGATCGCAAGCAACTTCGA
GACGCGCAAACCCACGACCCCACTGGCACATCTACATACAAAGCTACGTG
CGATAGGCCACCGCCGGTCGATTCCACGTCACTGGCACCGAAGGAGGGGC
TACGCGGATAGCGCACCGCTTGCGGTGTGTTCTTCCCATGGCACAGATAG
GTGAGGGGGGGGAAGTGAACAGCGATGAAGGGAGGGCTGGACACTCGGAC
CACAGGGGTGGCGGTGGTTCTAAGGGCGGTGGGATGGATGAGTTGCCGAC
GGGAGGGGATGAGTCGGCGGCTAAAGTGCTGTCAGTGAAAGGGGAAGCGG
TGACGGAGAGACCTCGGCAGGAAGGGAAATGAAGGTCGGGTGGAGACGTC
GAAGTTGGAGACTCACGTCAGACAAGGGAAGTGCTATCTAAGAGTGTACA
GCAGACATTCGACGATGCACAACGGACAGAGGCTGAGGTCTCTGGGGGAA
AGGGTGGAAGGCCTGGGGGCAAGTGGGGTTATGAGGGTATTGCGCACGCT
GGGGGGGGGAGTGTGTCGCGCAAGGGT
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Coding sequence (CDS) from alignment at Scaffold_581:100195..101571-

>EsuBft555_9a-0001 ID=EsuBft555_9a-0001|Name=EsuBft555_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=408bp|location=Sequence derived from alignment at Scaffold_581:100195..101571- (Ectocarpus subulatus male Bft15b)
ATGGCACCCTCTGCCCCATTCAGGATGGTCCTGCCCTGCCCGGGCTGTAC
GCGTGGTTCTTGGGTGGTCATGACCTGCGACATAGCACACAGAAGGTTGG
AGTTAGTTCTGGTTGAGATATCGTCAAATAAGGCCACCGCCGGTCGATTC
CACGTCACTGGCACCGAAGGAGGGGCTACGCGGATAGCGCACCGCTTGCG
GTGTGTTCTTCCCATGGCACAGATAGGTGAGGGGGGGGAAGTGAACAGCG
ATGAAGGGAGGGCTGGACACTCGGACCACAGGGGTGGCGGTGGTTCTAAG
GGCGGTGGGATGGATGAGTTGCCGACGGGAGGGGATGAGTCGGCGGCTAA
AGTGCTGTCAGTGAAAGGGGAAGCGGTGACGGAGAGACCTCGGCAGGAAG
GGAAATGA
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