Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FI08 |
| ProteomeId | EsuBft555_5 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 286 |
| Evalue | 7.29e-85 |
| EggNOG OGs | 2DCSR@1|root,2S5KN@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2862bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AAGGTGAGGTCCATTCTTATCATGGACAACTTGCACGCGCAGACCACGGA
CGAGTTCAAGGAGTATCTTGCGAGGCACTGCAACACTCTCGCCTGGTATG
GCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGA
CGATTTATCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGTTCGAGCA
GTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGATC
GGCGCGTCCTGATCACTCCGTGGATGGGAGCGGCCATGGCAAGACTCAAC
AGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGTTAT
GACCGTGGACGGCTGGGGCGATGATCGAATCACCTTGGAGGGTTTGGACA
AGCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGT
TCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGG
AGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGATGAAGACGACG
GCGACATCTCTCAACCCCAGNNNNNNNNNNNNNNNNNNNNNATTCAAGAA
GCTAACCCGTTGCTCTTGACAGATTGCTTTTGCGGCGTGGAGTGCTCGTT
AGGCTGGGCATGGGGTGGTTTGGAGGGCTGATCACTGAACAATCTCAGAA
GGACACTCGCCACCTGTACGACTACTGTGTGCAGCTGGAGCTAGACCAGA
GTATGCGCAAGATGAAGTTGCCCTCAGACAAGTACAGCGGAGATTCGGAT
GCGGCAGTAGGCTCCTGGGTTTTGCTTGAGAGCATTAGTAGATCAGGAAG
GGTACGCAGGACCAACGTCACCCTTGTGGACCAAGAAGGTTGACAGTTGC
TGCTCCATGCCTCGGTATTTTCTTGTATCGACAGCAGTACTAGTCTCGTG
GTTGACAGCCGACAACATAGCAAGTGATGTTAAAATACTGTAAGAACAAG
AACGCCCCTTTCTGGAGAAGAATGGACGACGAAAAAAGAACTTGGTAAAT
AAGAACTGGTGCTCGGGTTGTTGCTGTCTTCACATTAACAACCATCCCGG
TCTCTCTATCCAGTACCTCCTTCTGTCTCAATCTCTCCGTACATTTTTGG
GCCCGCTGTCTCCTCGTTTGATGGCTCGTTGTCGGCTGGCCTTCTCCTCG
CCCTTGTGCCAAGAGGCCATAAACCTGTCAGCTCCCTGTAGCACCCCCGC
GTGCCACGGTACCCCCCGGGTTAGGGCAGCCAATAAGAACTGAACCTCGC
CCAATATAGGAGGTTCTTAAGTGCGGGCCGGCACTGTAGCGGCAAAAAGA
TGTGCGGGGGAACTTGGCGAAACATGATTTTTTTTTCTTCAGCAGAACTT
CGATTTGTTGTGGCACACTACAGAGCTGCTGATACCTCGCGTACGAACGC
ACAGCAGTCGATACTGATGCCTCAGACCTTGCCAGAACTCAACTGTCTCA
TCCGTGTTGAGCACGCGGTCCGCTGTGAGCTTGTTCTCCACGATATACGC
TCCCCGTGCCTTGTAGAAATCTTTTGAGCCGAGGCTCATCGTTTTTGTTG
ATCCGGTTTGCCTCGTAGATGTGAGTTGTTCGCTTCGACAACGCCGGGTG
CCTCGCCATGAAGCCGTTAAGCCAGCTGCGCCCCGGGCCTTTATCTGGGT
CCCAGGGCACCGGGCGTCCGTTGAGGCAGAGCACTCGCACCGTATCTATG
AGCTGCTGCCGACCGCATCAATGAGCTGCTGCCGACCGAAACTAAGAAAT
TGTCGAAAAATAGCGTAGATCAACGCATCTTCCACCGCATCTTCTTCCGC
CTTGCTCAGCACAGTCTCGGGGCCAACCCTCGCATCCATGGCCATAGCAC
CGCTCAAACGTCGCGAGAGCGCGTCCTTGTTCACCCCGTAGGCCTTGGCA
GCAGCCCTGAGAGACAACTGACCACTGCGGACCGCATCGCAAGCCTTCTG
CCCCTGTTGTGGGTCTACTCTTGCCCGGCCCATGCTCGCAATGCTTAGCA
TCAGACCCGCCACAGGGATGAAAATGACCCGCATCACGGGTGTGGGAGGG
CGTGTTGCTGTATCTTGTGGGTGCGTGACCCGATCGGGACGCTGAAGTGC
TCAAACGAAAGCTAACGGAACGCATGAAAATTTGAAAAAAAAATCAGGGG
TCCCCGCGGATTGTGAGCGGAGATAAATGCACTTGTGCGTCTATGTGTCT
GTCTCTTAGTGGGGGGTGTCTCTTTATTGGTACCTTTACTCCAGACTAAT
AATTTCACTCGATTTTTTTTTGCGTGCGTTGTTTTTTTTAGTTATTTCTC
GAAAACCCTAACCAATCTGAGACTTCCGTCCCAACCATTTCGCCCGTTCT
GACCATGGTCCTACACGGGTCACGACAGCATAAAAGCACACTCTCTGTTT
CGCTAGGCTTCGGCGCAGCAGCAACCGGGGACAACCACGAATGAGCCTAA
AAAGGCCAAAGACCAAGATCCTGAAAAAAAGACACACAGAATTGTTGTTG
TTGTTGTCTTCACATTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTA
GCAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGAT
CTAAAGAACACGCACACATATAACGAGAAAAAGGTATCCAAGAGCCCGAA
GTGGTACACCTAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAAC
TGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGTC
CCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATACTGCTGTCTG
AAGTGCTGTCTG back to topprotein sequence of EsuBft555_5a-0001 >EsuBft555_5 ID=EsuBft555_5|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=184bp
MDNLHAQTTDEFKEYLARHCNTLAWYGPSECTDEVQPVDAGAGRFIKVEV
GRQMDIWFEQSDNLERWETASLTASDRRVLITPWMGAAMARLNSQQAYRY
RLFEKCGMVMTVDGWGDDRITLEGLDKPYTFANDEDSSDDEQGSENGNDE
PEGRAEEGDGGRETLMEGVDSSDEDDGDISQPQX back to topmRNA from alignment at Scaffold_581:74024..77060+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3037bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)
AAGGTGAGGTCCATTCTTATCATGGACAACTTGCACGCGCAGACCACGGA
CGAGTTCAAGGAGTATCTTGCGAGGCACTGCAACACTCTCGCCTGGTATG
GCCCTTCGGAGTGCACGGACGAGGTGCAGCCAGTTGATGCAGGAGCCGGA
CGATTTATCAAGGTGGAAGTCGGGAGGCAGATGGACATATGGTTCGAGCA
GTCGGACAACCTCGAGAGGTGGGAAACCGCGTCGCTGACAGCTTCTGATC
GGCGCGTCCTGATCACTCCGTGGATGGGAGCGGCCATGGCAAGACTCAAC
AGCCAACAGGCGTACCGATACCGTCTTTTCGAAAAGTGCGGGATGGTTAT
GACCGTGGACGGCTGGGGCGATGATCGAATCACCTTGGAGGGTTTGGACA
AGCCGTATACCTTCGCTAACGATGAAGACAGTAGCGACGACGAACAAGGT
TCGGAGAACGGCAACGATGAGCCTGAGGGGCGGGCGGAGGAGGGCGATGG
AGGACGTGAGACGCTCATGGAGGGCGTTGACTCCAGCGATGAAGACGACG
GCGGTAAGTTTGTTTTGCACAAAACCAACTCTTCATCTTCTTTTTGTTGA
TGACGATGTCCTTCATGTTGACGTTAGCTTGTTTCCGCGCACGGCTACAC
TCAAATTATGATAAGTTCAGGTTGAGTTTGGCGACGTGACACCCCAACTT
CTTGTGTTTCCCGTTGCCTCGTTCGCAGACATCTCTCAACCCCAGNNNNN
NNNNNNNNNNNNNNNNATTCAAGAAGCTAACCCGTTGCTCTTGACAGATT
GCTTTTGCGGCGTGGAGTGCTCGTTAGGCTGGGCATGGGGTGGTTTGGAG
GGCTGATCACTGAACAATCTCAGAAGGACACTCGCCACCTGTACGACTAC
TGTGTGCAGCTGGAGCTAGACCAGAGTATGCGCAAGATGAAGTTGCCCTC
AGACAAGTACAGCGGAGATTCGGATGCGGCAGTAGGCTCCTGGGTTTTGC
TTGAGAGCATTAGTAGATCAGGAAGGGTACGCAGGACCAACGTCACCCTT
GTGGACCAAGAAGGTTGACAGTTGCTGCTCCATGCCTCGGTATTTTCTTG
TATCGACAGCAGTACTAGTCTCGTGGTTGACAGCCGACAACATAGCAAGT
GATGTTAAAATACTGTAAGAACAAGAACGCCCCTTTCTGGAGAAGAATGG
ACGACGAAAAAAGAACTTGGTAAATAAGAACTGGTGCTCGGGTTGTTGCT
GTCTTCACATTAACAACCATCCCGGTCTCTCTATCCAGTACCTCCTTCTG
TCTCAATCTCTCCGTACATTTTTGGGCCCGCTGTCTCCTCGTTTGATGGC
TCGTTGTCGGCTGGCCTTCTCCTCGCCCTTGTGCCAAGAGGCCATAAACC
TGTCAGCTCCCTGTAGCACCCCCGCGTGCCACGGTACCCCCCGGGTTAGG
GCAGCCAATAAGAACTGAACCTCGCCCAATATAGGAGGTTCTTAAGTGCG
GGCCGGCACTGTAGCGGCAAAAAGATGTGCGGGGGAACTTGGCGAAACAT
GATTTTTTTTTCTTCAGCAGAACTTCGATTTGTTGTGGCACACTACAGAG
CTGCTGATACCTCGCGTACGAACGCACAGCAGTCGATACTGATGCCTCAG
ACCTTGCCAGAACTCAACTGTCTCATCCGTGTTGAGCACGCGGTCCGCTG
TGAGCTTGTTCTCCACGATATACGCTCCCCGTGCCTTGTAGAAATCTTTT
GAGCCGAGGCTCATCGTTTTTGTTGATCCGGTTTGCCTCGTAGATGTGAG
TTGTTCGCTTCGACAACGCCGGGTGCCTCGCCATGAAGCCGTTAAGCCAG
CTGCGCCCCGGGCCTTTATCTGGGTCCCAGGGCACCGGGCGTCCGTTGAG
GCAGAGCACTCGCACCGTATCTATGAGCTGCTGCCGACCGCATCAATGAG
CTGCTGCCGACCGAAACTAAGAAATTGTCGAAAAATAGCGTAGATCAACG
CATCTTCCACCGCATCTTCTTCCGCCTTGCTCAGCACAGTCTCGGGGCCA
ACCCTCGCATCCATGGCCATAGCACCGCTCAAACGTCGCGAGAGCGCGTC
CTTGTTCACCCCGTAGGCCTTGGCAGCAGCCCTGAGAGACAACTGACCAC
TGCGGACCGCATCGCAAGCCTTCTGCCCCTGTTGTGGGTCTACTCTTGCC
CGGCCCATGCTCGCAATGCTTAGCATCAGACCCGCCACAGGGATGAAAAT
GACCCGCATCACGGGTGTGGGAGGGCGTGTTGCTGTATCTTGTGGGTGCG
TGACCCGATCGGGACGCTGAAGTGCTCAAACGAAAGCTAACGGAACGCAT
GAAAATTTGAAAAAAAAATCAGGGGTCCCCGCGGATTGTGAGCGGAGATA
AATGCACTTGTGCGTCTATGTGTCTGTCTCTTAGTGGGGGGTGTCTCTTT
ATTGGTACCTTTACTCCAGACTAATAATTTCACTCGATTTTTTTTTGCGT
GCGTTGTTTTTTTTAGTTATTTCTCGAAAACCCTAACCAATCTGAGACTT
CCGTCCCAACCATTTCGCCCGTTCTGACCATGGTCCTACACGGGTCACGA
CAGCATAAAAGCACACTCTCTGTTTCGCTAGGCTTCGGCGCAGCAGCAAC
CGGGGACAACCACGAATGAGCCTAAAAAGGCCAAAGACCAAGATCCTGAA
AAAAAGACACACAGAATTGTTGTTGTTGTTGTCTTCACATTAAACCGTAT
GTCAGTTGCTAAATGCCAAAATCTAGCAAAGACTCTCAGCCCGTGGTCAC
GAAAGTGCTAGAGCCATCTGAGGATCTAAAGAACACGCACACATATAACG
AGAAAAAGGTATCCAAGAGCCCGAAGTGGTACACCTAAATCCCTGCAGCA
CCGTATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACT
ACAGTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATT
GCCGACTACAGCATACTGCTGTCTGAAGTGCTGTCTG back to topCoding sequence (CDS) from alignment at Scaffold_581:74024..77060+ >EsuBft555_5a-0001 ID=EsuBft555_5a-0001|Name=EsuBft555_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=552bp|location=Sequence derived from alignment at Scaffold_581:74024..77060+ (Ectocarpus subulatus male Bft15b)
ATGGACAACTTGCACGCGCAGACCACGGACGAGTTCAAGGAGTATCTTGC
GAGGCACTGCAACACTCTCGCCTGGTATGGCCCTTCGGAGTGCACGGACG
AGGTGCAGCCAGTTGATGCAGGAGCCGGACGATTTATCAAGGTGGAAGTC
GGGAGGCAGATGGACATATGGTTCGAGCAGTCGGACAACCTCGAGAGGTG
GGAAACCGCGTCGCTGACAGCTTCTGATCGGCGCGTCCTGATCACTCCGT
GGATGGGAGCGGCCATGGCAAGACTCAACAGCCAACAGGCGTACCGATAC
CGTCTTTTCGAAAAGTGCGGGATGGTTATGACCGTGGACGGCTGGGGCGA
TGATCGAATCACCTTGGAGGGTTTGGACAAGCCGTATACCTTCGCTAACG
ATGAAGACAGTAGCGACGACGAACAAGGTTCGGAGAACGGCAACGATGAG
CCTGAGGGGCGGGCGGAGGAGGGCGATGGAGGACGTGAGACGCTCATGGA
GGGCGTTGACTCCAGCGATGAAGACGACGGCGACATCTCTCAACCCCAGN
NN back to top
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