EsuBft555_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft555_4a-0001
Unique NameEsuBft555_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_581contigScaffold_581:72859..74022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G0Q3
ProteomeIdEsuBft555_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl2759|Eukaryota
Length88
Hectar predicted targeting categoryother localisation
Evalue2.31e-97
EggNOG OGs2DCSR@1|root,2S5KN@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft555_4aEsuBft555_4aEctocarpus subulatus male Bft15bgeneScaffold_581 72859..74022 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_4a-0001-exonEsuBft555_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_581 72859..73316 +
EsuBft555_4a-0001-exonagat-exon-37839Ectocarpus subulatus male Bft15bexonScaffold_581 73592..74022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_4a-0001-cdsEsuBft555_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_581 72859..73316 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_4a-0001-exonagat-three_prime_utr-18315Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_581 74001..74022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft555_4a-0001EsuBft555_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_581 72859..74000 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft555_4a-0001 ID=EsuBft555_4a-0001|Name=EsuBft555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=889bp|location=Sequence derived from alignment at Scaffold_581:72859..74022+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAACGGCGTGCGGCTGCGGCGCATGACACGGAAGGATGTCGGAGG
GAGTGTCCTGCCGTGGGAAGCAGCCGGACCTGGGCGTTGTTGGCACGTGG
AGTGCGATCATGCGACGGGGACGGCTTCGTTTGTCCTCCAGCGGAAGCAC
TTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGACTGCAAACCCAA
GGACACTCATGGGGCTCCCAAGCGCAGGCGATACGACTTCAGGTTCAAAG
CCCACGCAGTCAACCAGCTGCGCATCTTCCAGGACAACGCCGAAGACCTC
TGGAAGGAGGAGCAGCTCACGCCTCTTCAGTTCTTGGAGGATCGTCTCAA
GATTCCCTACAGCAATACAGTGAAGTGGGCCAAGAACGAGAAGGAATTTC
TTGCGGCGGCAGCCGATGACCTAAAGAAGAGCCTCCTCGCCAAACAGCAG
CCTAAGCGGGCGCCCGATGAGTCCGACGTGTCGGCAGTCACGACGGTCGC
GGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCCAGCTCTGGGAGC
GTTGGAATGTGGATCAAGTGTCTTTGGCATTCGTGAACGGGCTGCTCGAC
ACGTGGGACAAGAGAGGTGCGTTGCGGGTAGCAATCTCGCAGCTCTTTGC
TGGCCTAGAGAAAAGGCAGTGCAAGATGCAAGTCATCTTTGGTCCGGGTG
AGAAGACCATGCGCATTTCGGTGATTTCCGAGGCACGGGAAAGCGGATCT
CGCCGGTGGAGAAGGCAGCGCATCACGAGGACGTGGACGTGCTTTTCCAG
GAAAACGCGTGGGCCGACCAGAAGTTCTGCATGGAGTGGGCGAAGAGGTC
CTACCGCGAAGGCCTGATGCGCGGGCGGGGTGAGCTCCC
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protein sequence of EsuBft555_4a-0001

>EsuBft555_4 ID=EsuBft555_4|Name=EsuBft555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=288bp
MSNGVRLRRMTRKDVGGSVLPWEAAGPGRCWHVECDHATGTASFVLQRKH
FLDLDLDSDGFMDCKPKDTHGAPKRRRYDFRFKAHAVNQLRIFQDNAEDL
WKEEQLTPLQFLEDRLKIPYSNTVKWAKNEKEFLAAAADDLKKSLLAKQQ
PKRAPDESDVSAVTTVAERESRVPKYGQFQLWERWNVDQVSLAFVNGLLD
TWDKRGALRVAISQLFAGLEKRQCKMQVIFGPGEKTMRISVISEARESGS
RRWRRQRITRTWTCFSRKTRGPTRSSAWSGRRGPTAKA
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mRNA from alignment at Scaffold_581:72859..74022+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft555_4a-0001 ID=EsuBft555_4a-0001|Name=EsuBft555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1164bp|location=Sequence derived from alignment at Scaffold_581:72859..74022+ (Ectocarpus subulatus male Bft15b)
ATGTCCAACGGCGTGCGGCTGCGGCGCATGACACGGAAGGATGTCGGAGG
GAGTGTCCTGCCGTGGGAAGCAGCCGGACCTGGGCGTTGTTGGCACGTGG
AGTGCGATCATGCGACGGGGACGGCTTCGTTTGTCCTCCAGCGGAAGCAC
TTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGACTGCAAACCCAA
GGACACTCATGGGGCTCCCAAGCGCAGGCGATACGACTTCAGGTTCAAAG
CCCACGCAGTCAACCAGCTGCGCATCTTCCAGGACAACGCCGAAGACCTC
TGGAAGGAGGAGCAGCTCACGCCTCTTCAGTTCTTGGAGGATCGTCTCAA
GATTCCCTACAGCAATACAGTGAAGTGGGCCAAGAACGAGAAGGAATTTC
TTGCGGCGGCAGCCGATGACCTAAAGAAGAGCCTCCTCGCCAAACAGCAG
CCTAAGCGGTGATTTCCTGAGGCAGAGAAGCGACTGTACAAGGGGTTCGT
GGAGCGGCGGAAGAGAAAGCTGAAGGTGTCGACCCTGTGGCTGACGATCA
AGTTCCGGAAGCTCGTGCGAGAGATGTACCCCGGGGATCAAAGAGCGGCG
TCCTTCCGCGCATCCTTCAGGTGGGCGCGAAAATGGGCCAAGAGGCATAA
CCTGTCCAAAAGACGCCGGCTTCCAAAGATCCGCGCTTCCACCGGCTGTT
TCGCAAGCTCCTGCAAGAGCCGGTGCGGTGCAGGGCGCCCGATGAGTCCG
ACGTGTCGGCAGTCACGACGGTCGCGGAGAGAGAGTCCAGGGTTCCCAAA
TACGGTCAATTCCAGCTCTGGGAGCGTTGGAATGTGGATCAAGTGTCTTT
GGCATTCGTGAACGGGCTGCTCGACACGTGGGACAAGAGAGGTGCGTTGC
GGGTAGCAATCTCGCAGCTCTTTGCTGGCCTAGAGAAAAGGCAGTGCAAG
ATGCAAGTCATCTTTGGTCCGGGTGAGAAGACCATGCGCATTTCGGTGAT
TTCCGAGGCACGGGAAAGCGGATCTCGCCGGTGGAGAAGGCAGCGCATCA
CGAGGACGTGGACGTGCTTTTCCAGGAAAACGCGTGGGCCGACCAGAAGT
TCTGCATGGAGTGGGCGAAGAGGTCCTACCGCGAAGGCCTGATGCGCGGG
CGGGGTGAGCTCCC
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Coding sequence (CDS) from alignment at Scaffold_581:72859..74022+

>EsuBft555_4a-0001 ID=EsuBft555_4a-0001|Name=EsuBft555_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=867bp|location=Sequence derived from alignment at Scaffold_581:72859..74022+ (Ectocarpus subulatus male Bft15b)
ATGTCCAACGGCGTGCGGCTGCGGCGCATGACACGGAAGGATGTCGGAGG
GAGTGTCCTGCCGTGGGAAGCAGCCGGACCTGGGCGTTGTTGGCACGTGG
AGTGCGATCATGCGACGGGGACGGCTTCGTTTGTCCTCCAGCGGAAGCAC
TTTCTCGATCTCGACTTGGATAGCGACGGCTTTATGGACTGCAAACCCAA
GGACACTCATGGGGCTCCCAAGCGCAGGCGATACGACTTCAGGTTCAAAG
CCCACGCAGTCAACCAGCTGCGCATCTTCCAGGACAACGCCGAAGACCTC
TGGAAGGAGGAGCAGCTCACGCCTCTTCAGTTCTTGGAGGATCGTCTCAA
GATTCCCTACAGCAATACAGTGAAGTGGGCCAAGAACGAGAAGGAATTTC
TTGCGGCGGCAGCCGATGACCTAAAGAAGAGCCTCCTCGCCAAACAGCAG
CCTAAGCGGGCGCCCGATGAGTCCGACGTGTCGGCAGTCACGACGGTCGC
GGAGAGAGAGTCCAGGGTTCCCAAATACGGTCAATTCCAGCTCTGGGAGC
GTTGGAATGTGGATCAAGTGTCTTTGGCATTCGTGAACGGGCTGCTCGAC
ACGTGGGACAAGAGAGGTGCGTTGCGGGTAGCAATCTCGCAGCTCTTTGC
TGGCCTAGAGAAAAGGCAGTGCAAGATGCAAGTCATCTTTGGTCCGGGTG
AGAAGACCATGCGCATTTCGGTGATTTCCGAGGCACGGGAAAGCGGATCT
CGCCGGTGGAGAAGGCAGCGCATCACGAGGACGTGGACGTGCTTTTCCAG
GAAAACGCGTGGGCCGACCAGAAGTTCTGCATGGAGTGGGCGAAGAGGTC
CTACCGCGAAGGCCTGA
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