EsuBft555_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft555_14a-0001
Unique Name	EsuBft555_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_581	contig	Scaffold_581:129583..131671 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft555_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	183
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft555_14a	EsuBft555_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_581 129583..131671 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_14a-0001-exon	EsuBft555_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 129583..129587 +
EsuBft555_14a-0001-exon	agat-exon-37875	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 129682..130873 +
EsuBft555_14a-0001-exon	agat-exon-37874	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 130925..131527 +
EsuBft555_14a-0001-exon	agat-exon-37873	Ectocarpus subulatus male Bft15b	exon	Scaffold_581 131642..131671 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_14a-0001-cds	EsuBft555_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_581 129583..129587 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft555_14a-0001	EsuBft555_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_581 129583..131671 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_581:129583..131671+
coding sequence from alignment at Scaffold_581:129583..131671+

spliced messenger RNA

>EsuBft555_14a-0001 ID=EsuBft555_14a-0001|Name=EsuBft555_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1830bp|location=Sequence derived from alignment at Scaffold_581:129583..131671+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGTTTCCGGACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTT
AGGGCGAGCTGTAATCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCC
TGCCTCTAGCTCTCGTGCGAGACTTTAGTCCTAGCAAGGACTGCCTCTGC
CAGCGCCCAGACTGCTTCCTAGCTATTTTCGCCAAGAAAGAAAGGAAGGC
AGAGTTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACAGGAGCC
GCGTAAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCGGAGGGT
ACTGCGATAGTGAGTGATGGTGATTGGTGGTGCGGCTGTTGCTACCACAG
TCGGTTGAACGGCATGAAGAGAGACGACAAACCGACAGAGCAACCAGCGA
ACAGGTCATGTGGATCGGAGGACGAGGCACCGACGCTTGTAGAGCCTTTG
AGCACGGTGCGCAGGATGGTGGATGACGTCCTCGGTCGAGGTGAGATCCT
TTGCTGGCAGGACGTCGCCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTG
GCATGGAGGAGATAACGAGGAAGTACGCACGACAACTCGTCCTGAACTTG
TTTACCGGGATGGACGCAGACCCCGGGAGCAAATCACGATTGGTCCGAGC
CGACGGAGCCCAAGGAGACGCACGCGAGCGGGAACTCTTCCTCGTCCCAA
ACACCCTTGGGGACAAGCATCTCGTTGACTTGATGCTGCGTGCTCGACGT
AGTGCACCCGCACAGCCACCATCCAACCAGCTAGCTGATAAGGGTGGGTC
TCTCGAGTCGATTCTGAAGGAAGTCGAGAAGGACACGGAGGACGCAGACG
CACGGATGTCCGTCGTGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTG
GAGAGTGACCCTGCCCTGAAGAACACCACCGGCACACGCGAGAAGTATCG
CTACGCCGATGAGTTGGACATGAAAGTGAAGCCACCCAGAGAGACTCTAC
TATCCACGTTTCCGCCGTCCTTGGTTGGGTTGTACCAAAGCATGACGGAC
ATGGCACTGTATCGCGAGATCATCGCATCAGAGACCGAACATCCTGGAGA
GCCCTGGGTATGGCAGACCGAAGGGCGAGACGGACGGCATCCTACCACCT
CGGGCGACTTAGAGGGCGAGAACGGTGATGGAGAAAAGAAGAACGAGGCC
AGGCATATCAACAGCCTCAACCGTGACAGGCGATCCACGCATCGTAGGCT
TCTGGTGATGTGTACGGTCGTGGTGACGGCAATTTTGCGTGGTAGGTACA
TGGGTTCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGGTACG
TGTCGCGAGGTGACCAACTTTGTAGCGGAGCACGGTTTGTGGGCGACGAC
GTCGCAAATTCAGCACCGAGAAGATTACCACGCGAGGTTCGTAGAGGACA
AGGACCTTCTGAGCCAAGACGCCGAGTGCGCCGCCATTCCCCTGGACAAC
TGTGATTTTGACCCAAGGGTCGGAGTTGGCCAGGGGGAGGGGCCTCATCT
TCCCTTCATCGCTGCGACGGCTTTAACGGTAGGGCCCGACGTAGGTCGAA
TGGACGACTGGTGGTTGGTAAAGGGTCGGGGATCTCTTACGGTAGAGGAC
GTCCTTATGGGGCCGGAGCGGGACCGGGGGGACGGAGCGCGGCGTTATAA
CGAGTTTTCGGCCGACCTCTACCGCGGCGTATTCGCTGAGGCACGGAACA
ACTCCGACAGGGCTGCGGCAGACACATGCTTCGAGTGTGAACTCCGCAAG
TCGCGCCCTCCACACTGTTCCTGTGGATGA

protein sequence of EsuBft555_14a-0001

>EsuBft555_14 ID=EsuBft555_14|Name=EsuBft555_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=609bp
MRFPDDEGFTHLRADRLGRAVIFVAALRQGEKPLPLALVRDFSPSKDCLC
QRPDCFLAIFAKKERKAEFRQCSKCKYRKSDRSRVRWYPMDAAGDHVAEG
TAIVSDGDWWCGCCYHSRLNGMKRDDKPTEQPANRSCGSEDEAPTLVEPL
STVRRMVDDVLGRGEILCWQDVAGWLAAERAKVGMEEITRKYARQLVLNL
FTGMDADPGSKSRLVRADGAQGDARERELFLVPNTLGDKHLVDLMLRARR
SAPAQPPSNQLADKGGSLESILKEVEKDTEDADARMSVVRAAGRIVRADV
ESDPALKNTTGTREKYRYADELDMKVKPPRETLLSTFPPSLVGLYQSMTD
MALYREIIASETEHPGEPWVWQTEGRDGRHPTTSGDLEGENGDGEKKNEA
RHINSLNRDRRSTHRRLLVMCTVVVTAILRGRYMGSHDIKGAQWAKSKGT
CREVTNFVAEHGLWATTSQIQHREDYHARFVEDKDLLSQDAECAAIPLDN
CDFDPRVGVGQGEGPHLPFIAATALTVGPDVGRMDDWWLVKGRGSLTVED
VLMGPERDRGDGARRYNEFSADLYRGVFAEARNNSDRAAADTCFECELRK
SRPPHCSCG

mRNA from alignment at Scaffold_581:129583..131671+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft555_14a-0001 ID=EsuBft555_14a-0001|Name=EsuBft555_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2089bp|location=Sequence derived from alignment at Scaffold_581:129583..131671+ (Ectocarpus subulatus male Bft15b)
ATGCGGTTGGGTTACACACTACCCTGGCACCGAGTGTAGCACATGCCCCG
GGAGTGTAGTGCACTCGGCCGACGAGAGACTATGTTCGGCATGCCACAGG
TTTCCGGACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTTAGGGCG
AGCTGTAATCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCCTGCCTC
TAGCTCTCGTGCGAGACTTTAGTCCTAGCAAGGACTGCCTCTGCCAGCGC
CCAGACTGCTTCCTAGCTATTTTCGCCAAGAAAGAAAGGAAGGCAGAGTT
TCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACAGGAGCCGCGTAA
GGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCGGAGGGTACTGCG
ATAGTGAGTGATGGTGATTGGTGGTGCGGCTGTTGCTACCACAGTCGGTT
GAACGGCATGAAGAGAGACGACAAACCGACAGAGCAACCAGCGAACAGGT
CATGTGGATCGGAGGACGAGGCACCGACGCTTGTAGAGCCTTTGAGCACG
GTGCGCAGGATGGTGGATGACGTCCTCGGTCGAGGTGAGATCCTTTGCTG
GCAGGACGTCGCCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTGGCATGG
AGGAGATAACGAGGAAGTACGCACGACAACTCGTCCTGAACTTGTTTACC
GGGATGGACGCAGACCCCGGGAGCAAATCACGATTGGTCCGAGCCGACGG
AGCCCAAGGAGACGCACGCGAGCGGGAACTCTTCCTCGTCCCAAACACCC
TTGGGGACAAGCATCTCGTTGACTTGATGCTGCGTGCTCGACGTAGTGCA
CCCGCACAGCCACCATCCAACCAGCTAGCTGATAAGGGTGGGTCTCTCGA
GTCGATTCTGAAGGAAGTCGAGAAGGACACGGAGGACGCAGACGCACGGA
TGTCCGTCGTGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTGGAGAGT
GACCCTGCCCTGAAGAACACCACCGGCACACGCGAGAAGTATCGCTACGC
CGATGAGTTGGACATGAAAGTGAAGCCACCCAGAGAGACTCTACTATCCA
CGTTTCCGCCGTCCTTGGTTGGGTTGTACCAAAGCATGACGGACATGGCA
CTGTATCGCGAGATCATCGCATCAGAGACCGAACATCCTGGAGAGCCCTG
GGTATGGCAGACCGAAGGGCGAGACGGACGGCATCCTACCACCTCGGGCG
ACTTAGAGGGCGAGAACGGTGATGGAGAAAAGAAGAACGAGGTCAGTCAA
CCAGCAGTGACGGTGTCGTTAGGGCCACGAACCGAGGAACAGGCCAGGCA
TATCAACAGCCTCAACCGTGACAGGCGATCCACGCATCGTAGGCTTCTGG
TGATGTGTACGGTCGTGGTGACGGCAATTTTGCGTGGTAGGTACATGGGT
TCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGGTACGTGTCG
CGAGGTGACCAACTTTGTAGCGGAGCACGGTTTGTGGGCGACGACGTCGC
AAATTCAGCACCGAGAAGATTACCACGCGAGGTTCGTAGAGGACAAGGAC
CTTCTGAGCCAAGACGCCGAGTGCGCCGCCATTCCCCTGGACAACTGTGA
TTTTGACCCAAGGGTCGGAGTTGGCCAGGGGGAGGGGCCTCATCTTCCCT
TCATCGCTGCGACGGCTTTAACGGTAGGGCCCGACGTAGGTCGAATGGAC
GACTGGTGGTTGGTAAAGGGTCGGGGATCTCTTACGGTAGAGGACGTCCT
TATGGGGCCGGAGCGGGACCGGGGGGACGGAGCGCGGCGTTATAACGAGT
TTTCGGCCGACCTCTACCGCGGCGTATTCGCTGAGGCACGGAACAACTCC
GACAGGGCTGCGGCAGACACATGCTTCGAGTGTGAACTCCGCAAGGTAAG
ACACCATTCTTTGTACTTTCTCCCTCCTTGCTTTCTGGTTTTTCCACGAT
CTATCCCATCTGACTGGACATATACTACCCAATTATATATGGCGTTCGAC
GAGTCTAAGTCGCGCCCTCCACACTGTTCCTGTGGATGA

Coding sequence (CDS) from alignment at Scaffold_581:129583..131671+

>EsuBft555_14a-0001 ID=EsuBft555_14a-0001|Name=EsuBft555_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1830bp|location=Sequence derived from alignment at Scaffold_581:129583..131671+ (Ectocarpus subulatus male Bft15b)
ATGCGGTTTCCGGACGACGAAGGTTTCACGCACCTCCGCGCGGACCGGTT
AGGGCGAGCTGTAATCTTCGTAGCCGCGTTGAGACAAGGAGAGAAACCCC
TGCCTCTAGCTCTCGTGCGAGACTTTAGTCCTAGCAAGGACTGCCTCTGC
CAGCGCCCAGACTGCTTCCTAGCTATTTTCGCCAAGAAAGAAAGGAAGGC
AGAGTTTCGCCAATGCAGTAAATGCAAGTACCGGAAATCGGACAGGAGCC
GCGTAAGGTGGTATCCCATGGATGCTGCAGGAGATCATGTCGCGGAGGGT
ACTGCGATAGTGAGTGATGGTGATTGGTGGTGCGGCTGTTGCTACCACAG
TCGGTTGAACGGCATGAAGAGAGACGACAAACCGACAGAGCAACCAGCGA
ACAGGTCATGTGGATCGGAGGACGAGGCACCGACGCTTGTAGAGCCTTTG
AGCACGGTGCGCAGGATGGTGGATGACGTCCTCGGTCGAGGTGAGATCCT
TTGCTGGCAGGACGTCGCCGGTTGGCTAGCTGCTGAACGCGCGAAGGTTG
GCATGGAGGAGATAACGAGGAAGTACGCACGACAACTCGTCCTGAACTTG
TTTACCGGGATGGACGCAGACCCCGGGAGCAAATCACGATTGGTCCGAGC
CGACGGAGCCCAAGGAGACGCACGCGAGCGGGAACTCTTCCTCGTCCCAA
ACACCCTTGGGGACAAGCATCTCGTTGACTTGATGCTGCGTGCTCGACGT
AGTGCACCCGCACAGCCACCATCCAACCAGCTAGCTGATAAGGGTGGGTC
TCTCGAGTCGATTCTGAAGGAAGTCGAGAAGGACACGGAGGACGCAGACG
CACGGATGTCCGTCGTGCGGGCAGCTGGTAGAATTGTTCGAGCCGACGTG
GAGAGTGACCCTGCCCTGAAGAACACCACCGGCACACGCGAGAAGTATCG
CTACGCCGATGAGTTGGACATGAAAGTGAAGCCACCCAGAGAGACTCTAC
TATCCACGTTTCCGCCGTCCTTGGTTGGGTTGTACCAAAGCATGACGGAC
ATGGCACTGTATCGCGAGATCATCGCATCAGAGACCGAACATCCTGGAGA
GCCCTGGGTATGGCAGACCGAAGGGCGAGACGGACGGCATCCTACCACCT
CGGGCGACTTAGAGGGCGAGAACGGTGATGGAGAAAAGAAGAACGAGGCC
AGGCATATCAACAGCCTCAACCGTGACAGGCGATCCACGCATCGTAGGCT
TCTGGTGATGTGTACGGTCGTGGTGACGGCAATTTTGCGTGGTAGGTACA
TGGGTTCGCACGACATCAAAGGGGCTCAGTGGGCAAAGTCTAAGGGTACG
TGTCGCGAGGTGACCAACTTTGTAGCGGAGCACGGTTTGTGGGCGACGAC
GTCGCAAATTCAGCACCGAGAAGATTACCACGCGAGGTTCGTAGAGGACA
AGGACCTTCTGAGCCAAGACGCCGAGTGCGCCGCCATTCCCCTGGACAAC
TGTGATTTTGACCCAAGGGTCGGAGTTGGCCAGGGGGAGGGGCCTCATCT
TCCCTTCATCGCTGCGACGGCTTTAACGGTAGGGCCCGACGTAGGTCGAA
TGGACGACTGGTGGTTGGTAAAGGGTCGGGGATCTCTTACGGTAGAGGAC
GTCCTTATGGGGCCGGAGCGGGACCGGGGGGACGGAGCGCGGCGTTATAA
CGAGTTTTCGGCCGACCTCTACCGCGGCGTATTCGCTGAGGCACGGAACA
ACTCCGACAGGGCTGCGGCAGACACATGCTTCGAGTGTGAACTCCGCAAG
TCGCGCCCTCCACACTGTTCCTGTGGATGA