Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LEE7 |
| ProteomeId | EsuBft555_11 |
| Protein domains | PTHR24123 |
| Protein domains | IPR020683 |
| Protein domains | IPR002110 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | ankyrin-3 os:homo sapiens gn:ank3 pe:1 sv:3 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1770 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.82e-153 |
| EggNOG OGs | COG0666@1|root,KOG4177@2759|Eukaryota |
| Ec32 ortholog description | Ankyrin-repeat protein similar to EsV-1-21 |
| Ec32 ortholog | Ec-00_002020.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | spectrin binding |
| COG category | I |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0032414 |
| GO | 0008092 |
| GO | 0048193 |
| GO | 0086070 |
| GO | 0033365 |
| GO | 0030054 |
| GO | 0030674 |
| GO | 0030016 |
| GO | 0006886 |
| GO | 0007399 |
| GO | 0045202 |
| GO | 0086019 |
| GO | 0043266 |
| GO | 2000021 |
| GO | 0019899 |
| GO | 0043270 |
| GO | 0051924 |
| GO | 0032386 |
| GO | 0043231 |
| GO | 0032989 |
| GO | 0005515 |
| GO | 0005856 |
| GO | 0098590 |
| GO | 0048468 |
| GO | 0007165 |
| GO | 0090002 |
| GO | 0086004 |
| GO | 0044304 |
| GO | 0086001 |
| GO | 0044449 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGGCTAGCATCAGCAGGATGGACACCAGCGGTCGCACTCCCCTCCAT
TTAGCGTCCGGCGGAAACTCCTGCGACATAATAAACACGCTCTTGGAGGG
CGGGGCTAACGAGAATTCGCTTTCCGGTGATGGCGAAGCGCCGCTTCACG
TGGCAGCGGCGTGCGGTAGCGTTGCTGCGACACAAGCCCTGCTGGCTGCT
GGCGCCAGTGTCGACCTCCCGTTTGACAAAGATGGCTCGTCACCTCTGTC
AATAGCCGCGTTGAACGGGCACGCCGACGTGGCCAAAGTTTTGATTCGTC
ACGAAGCGGGTTTGGGCGCGACGGACAGTGAGGGCTCGACTGCTTTGCAC
CAGGCAGCGTCCAAGAACCATGCTGTTGTTGTTGACGTGCTTATCAAGGC
TGGGGCGAGTTTGGAAGTGCTGGACAAGTCCTCCAGGACGCCTCTGGTCG
TGGCCTTCGACGACTTCGGCAGGCGTGCAAGGAAAGATGGGCAGACCACT
ATAGTTACCCTGTTGAAGCATGGGGCCAACGCAAATGTGCAGACCGGCGG
TTATTCACAGCTTTCGTGCGCAGCGCACGCTAACTCCCTTCCAGTAGTTG
AAGCCCTCCTCGCCGCTGGTGCGGAGGTAAACGCTGTCCGCAAGTGGACT
GGGTGCACGGCACTGCATGTGTCCTCGGAGCATCAGCACCCCGCCGTACT
GGAGGAACTACTTCGGAACGCGGCGGACACGGAGATATACGCAATGGGTG
GCCAGACTCCGTTGCACGTAGCCGCTTACGGTGGCCATGTGCACCCGATC
AATTTTCTCATCGACGGAGGCGCTATGGTCAGTGCTAAAGATGAGGACGG
CCGGACACCTCTTCACGTTGCTTGTTCGAAACTGGACTGCTCAGCTATAC
ACGCCCTCCTGAGAAGCGGCTCCGACATTCAAGCGGTGGACAACAGCCGA
TGTTCTCCCCTTCACCACGCAGTGAACCGCATCGAGCATTGGGATTCTGC
AGCCGACGTGGCTCACGCAGTGAACCTTTTGTTGAGATGGGGTGCAGATG
AAAACGCCGTAAACTCACAAGGCAAGACCGCTCGAGAAGTTTTGCAACAA
GTCTCGTCCTTTCCTGCTCCGTTCCCGGACGACACGACGCAAGTTCAACG
CTTGCTATCAAAGGCGCCCCAGGACAAAACATGGCGTCGTCGCGGCTGGC
TAGTCTTGGGCCGCACTAGGCCCAACAGGGTAAAGCCGAAAGCGAAGAAC
GAGGGAGCAAGTACTAGAAGTTCGACACGGAACGTTCGAGCGCGGGATTC
CGCTACTGGGGCAAGGTTCAACGCTGCGGCGACGCTCGAACAGGAAGTAG
AAGGGGCCATTGCACCAAGGGATATATATGCTTCTGCTGCTGCTGGCTTG
AGCAACTTGGTGGCGGCTGTGCTTGGTTTACGCGAGGAAGATGTATTCCG
GAGTGTCGTGGGGTTCCTGTAATGTATGTCCAAGGTGTTGTACTCCTGAT
CGGTGAGTGTTTTTTTTTCTGGCGGCAATAGTAATGAAGTTACAGGCAAG
TGTTGTATACGTGCAATTTTAGTCGAGGTTGATCTCAGAAGGAGGAAAAT
GCTAATTGATTTTCAGAGTTCATTCGCATGGATGGCCAACTTGGTTAACT
TGATCGGGGTGCGAGCATACATGAGTGGAAGGAAGCTGGCGTCCATGGCG
GGTCTCCAAAATGCAGGTATCGGTAGTAAAGAAATATATAATCTTCGAGG
GTTGGGTATGGTAGCGAACC back to topprotein sequence of EsuBft555_11a-0001 >EsuBft555_11 ID=EsuBft555_11|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=483bp
MDTSGRTPLHLASGGNSCDIINTLLEGGANENSLSGDGEAPLHVAAACGS
VAATQALLAAGASVDLPFDKDGSSPLSIAALNGHADVAKVLIRHEAGLGA
TDSEGSTALHQAASKNHAVVVDVLIKAGASLEVLDKSSRTPLVVAFDDFG
RRARKDGQTTIVTLLKHGANANVQTGGYSQLSCAAHANSLPVVEALLAAG
AEVNAVRKWTGCTALHVSSEHQHPAVLEELLRNAADTEIYAMGGQTPLHV
AAYGGHVHPINFLIDGGAMVSAKDEDGRTPLHVACSKLDCSAIHALLRSG
SDIQAVDNSRCSPLHHAVNRIEHWDSAADVAHAVNLLLRWGADENAVNSQ
GKTAREVLQQVSSFPAPFPDDTTQVQRLLSKAPQDKTWRRRGWLVLGRTR
PNRVKPKAKNEGASTRSSTRNVRARDSATGARFNAAATLEQEVEGAIAPR
DIYASAAAGLSNLVAAVLGLREEDVFRSVVGFL back to topmRNA from alignment at Scaffold_581:102478..104247+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1770bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTAGCATCAGCAGGATGGACACCAGCGGTCGCACTCCCCTCCAT
TTAGCGTCCGGCGGAAACTCCTGCGACATAATAAACACGCTCTTGGAGGG
CGGGGCTAACGAGAATTCGCTTTCCGGTGATGGCGAAGCGCCGCTTCACG
TGGCAGCGGCGTGCGGTAGCGTTGCTGCGACACAAGCCCTGCTGGCTGCT
GGCGCCAGTGTCGACCTCCCGTTTGACAAAGATGGCTCGTCACCTCTGTC
AATAGCCGCGTTGAACGGGCACGCCGACGTGGCCAAAGTTTTGATTCGTC
ACGAAGCGGGTTTGGGCGCGACGGACAGTGAGGGCTCGACTGCTTTGCAC
CAGGCAGCGTCCAAGAACCATGCTGTTGTTGTTGACGTGCTTATCAAGGC
TGGGGCGAGTTTGGAAGTGCTGGACAAGTCCTCCAGGACGCCTCTGGTCG
TGGCCTTCGACGACTTCGGCAGGCGTGCAAGGAAAGATGGGCAGACCACT
ATAGTTACCCTGTTGAAGCATGGGGCCAACGCAAATGTGCAGACCGGCGG
TTATTCACAGCTTTCGTGCGCAGCGCACGCTAACTCCCTTCCAGTAGTTG
AAGCCCTCCTCGCCGCTGGTGCGGAGGTAAACGCTGTCCGCAAGTGGACT
GGGTGCACGGCACTGCATGTGTCCTCGGAGCATCAGCACCCCGCCGTACT
GGAGGAACTACTTCGGAACGCGGCGGACACGGAGATATACGCAATGGGTG
GCCAGACTCCGTTGCACGTAGCCGCTTACGGTGGCCATGTGCACCCGATC
AATTTTCTCATCGACGGAGGCGCTATGGTCAGTGCTAAAGATGAGGACGG
CCGGACACCTCTTCACGTTGCTTGTTCGAAACTGGACTGCTCAGCTATAC
ACGCCCTCCTGAGAAGCGGCTCCGACATTCAAGCGGTGGACAACAGCCGA
TGTTCTCCCCTTCACCACGCAGTGAACCGCATCGAGCATTGGGATTCTGC
AGCCGACGTGGCTCACGCAGTGAACCTTTTGTTGAGATGGGGTGCAGATG
AAAACGCCGTAAACTCACAAGGCAAGACCGCTCGAGAAGTTTTGCAACAA
GTCTCGTCCTTTCCTGCTCCGTTCCCGGACGACACGACGCAAGTTCAACG
CTTGCTATCAAAGGCGCCCCAGGACAAAACATGGCGTCGTCGCGGCTGGC
TAGTCTTGGGCCGCACTAGGCCCAACAGGGTAAAGCCGAAAGCGAAGAAC
GAGGGAGCAAGTACTAGAAGTTCGACACGGAACGTTCGAGCGCGGGATTC
CGCTACTGGGGCAAGGTTCAACGCTGCGGCGACGCTCGAACAGGAAGTAG
AAGGGGCCATTGCACCAAGGGATATATATGCTTCTGCTGCTGCTGGCTTG
AGCAACTTGGTGGCGGCTGTGCTTGGTTTACGCGAGGAAGATGTATTCCG
GAGTGTCGTGGGGTTCCTGTAATGTATGTCCAAGGTGTTGTACTCCTGAT
CGGTGAGTGTTTTTTTTTCTGGCGGCAATAGTAATGAAGTTACAGGCAAG
TGTTGTATACGTGCAATTTTAGTCGAGGTTGATCTCAGAAGGAGGAAAAT
GCTAATTGATTTTCAGAGTTCATTCGCATGGATGGCCAACTTGGTTAACT
TGATCGGGGTGCGAGCATACATGAGTGGAAGGAAGCTGGCGTCCATGGCG
GGTCTCCAAAATGCAGGTATCGGTAGTAAAGAAATATATAATCTTCGAGG
GTTGGGTATGGTAGCGAACC back to topCoding sequence (CDS) from alignment at Scaffold_581:102478..104247+ >EsuBft555_11a-0001 ID=EsuBft555_11a-0001|Name=EsuBft555_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1452bp|location=Sequence derived from alignment at Scaffold_581:102478..104247+ (Ectocarpus subulatus male Bft15b)
ATGGACACCAGCGGTCGCACTCCCCTCCATTTAGCGTCCGGCGGAAACTC
CTGCGACATAATAAACACGCTCTTGGAGGGCGGGGCTAACGAGAATTCGC
TTTCCGGTGATGGCGAAGCGCCGCTTCACGTGGCAGCGGCGTGCGGTAGC
GTTGCTGCGACACAAGCCCTGCTGGCTGCTGGCGCCAGTGTCGACCTCCC
GTTTGACAAAGATGGCTCGTCACCTCTGTCAATAGCCGCGTTGAACGGGC
ACGCCGACGTGGCCAAAGTTTTGATTCGTCACGAAGCGGGTTTGGGCGCG
ACGGACAGTGAGGGCTCGACTGCTTTGCACCAGGCAGCGTCCAAGAACCA
TGCTGTTGTTGTTGACGTGCTTATCAAGGCTGGGGCGAGTTTGGAAGTGC
TGGACAAGTCCTCCAGGACGCCTCTGGTCGTGGCCTTCGACGACTTCGGC
AGGCGTGCAAGGAAAGATGGGCAGACCACTATAGTTACCCTGTTGAAGCA
TGGGGCCAACGCAAATGTGCAGACCGGCGGTTATTCACAGCTTTCGTGCG
CAGCGCACGCTAACTCCCTTCCAGTAGTTGAAGCCCTCCTCGCCGCTGGT
GCGGAGGTAAACGCTGTCCGCAAGTGGACTGGGTGCACGGCACTGCATGT
GTCCTCGGAGCATCAGCACCCCGCCGTACTGGAGGAACTACTTCGGAACG
CGGCGGACACGGAGATATACGCAATGGGTGGCCAGACTCCGTTGCACGTA
GCCGCTTACGGTGGCCATGTGCACCCGATCAATTTTCTCATCGACGGAGG
CGCTATGGTCAGTGCTAAAGATGAGGACGGCCGGACACCTCTTCACGTTG
CTTGTTCGAAACTGGACTGCTCAGCTATACACGCCCTCCTGAGAAGCGGC
TCCGACATTCAAGCGGTGGACAACAGCCGATGTTCTCCCCTTCACCACGC
AGTGAACCGCATCGAGCATTGGGATTCTGCAGCCGACGTGGCTCACGCAG
TGAACCTTTTGTTGAGATGGGGTGCAGATGAAAACGCCGTAAACTCACAA
GGCAAGACCGCTCGAGAAGTTTTGCAACAAGTCTCGTCCTTTCCTGCTCC
GTTCCCGGACGACACGACGCAAGTTCAACGCTTGCTATCAAAGGCGCCCC
AGGACAAAACATGGCGTCGTCGCGGCTGGCTAGTCTTGGGCCGCACTAGG
CCCAACAGGGTAAAGCCGAAAGCGAAGAACGAGGGAGCAAGTACTAGAAG
TTCGACACGGAACGTTCGAGCGCGGGATTCCGCTACTGGGGCAAGGTTCA
ACGCTGCGGCGACGCTCGAACAGGAAGTAGAAGGGGCCATTGCACCAAGG
GATATATATGCTTCTGCTGCTGCTGGCTTGAGCAACTTGGTGGCGGCTGT
GCTTGGTTTACGCGAGGAAGATGTATTCCGGAGTGTCGTGGGGTTCCTGT
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