Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 7668.SPU_010878-tr |
| ProteomeId | EsuBft5543_2 |
| Protein domains | IPR027124 |
| Protein domains | PTHR23227 |
| Protein domains | IPR005135 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | craniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 33208|Metazoa |
| Length | 1143 |
| Hectar predicted targeting category | other localisation |
| Evalue | 8.44e-18 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39VM0@33154|Opisthokonta,3BKMM@33208|Metazoa,3D1CS@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Endonuclease/Exonuclease/phosphatase family |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1143bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGTGTCAGTTGCTAATCCCAAAATCTAGCAAAGACTCGGTCCGTGGTCAC
AAAAATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCA
ATAAATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCAC
GTTTGCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTA
CAGCAGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATATAG
TAGGCGGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGT
GGCAGTGAGGAAGCACAGACGGTGGCAGTGGCGAGAGGCAAGAACCGAGC
TCTGCAGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATACGGA
AGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCA
GCGGCCGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATC
GTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCA
TCGGTCACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGT
GATGTGATAGGACTTCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGC
ACACGACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGG
ACAAGAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGACCATGTGG
GAGAGTGTGGGCGAGGAAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCT
GATGAAGGTGCGTTTACGAATTGGCCGCACCTGCGGAATAACTTTCGTGG
TGAGGTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATATT
AACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGT
TCACAGCCATGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTG
GTAGGAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGTGTACGGA
CGCGACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAAA
CAATCAACTCTCCCTGACCAATACCTACTTCCGAACACCGTAA back to topprotein sequence of EsuBft5543_2a-0001 >EsuBft5543_2 ID=EsuBft5543_2|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=362bp
MLEPSDDLKNTHTISNKWVRKPEEVHLQSLQHVCMLTTELHAHTLQIDYS
SSITPLVPHLTKMNIVGGWCPKVQLTAALAQRGSEEAQTVAVARGKNRAL
QRWIDARKFAARKIRKKAHPQREVDRERHETAAAVKAAAKKKAREGDLSF
GTFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAH
DGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLM
KVRLRIGRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVH
SHDHLVVLMDANARTGRRRDGCCDAKIMGVYGRDIMNNNGERLLGLASNN
QLSLTNTYFRTP back to topmRNA from alignment at Scaffold_544:189723..191499- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1777bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)
CGTGTCAGTTGCTAATCCCAAAATCTAGCAAAGACTCGGTCCGTGGTCAC
AAAAATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCA
ATAAATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCAC
GTTTGCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTA
CAGCAGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATGTTT
GTCGACTACAGCGTACTGCTGTCTGAAGTGCTGTCTGTACAATAACAACA
ACACCATGGTGCATGCTACACAAGCTCGGGGCATGCAGCTGCTGCCTGAA
GTGCTGTCAAAATGAGTCCGTAGACATACAATGAAGCAGAACACCCAACC
AAAGCCATCATTGCAATTGAAAATCACCCGAATCTATCCAGATCATCTGT
GTTAGGCACAGCAGTGTAAACATCGACACTGACTAGGAATCGTTCCACAT
TGAAGGGGTCTTCCACGATGCAGGTACACAATTACAAGCACCCGGGATAT
CCGCGCCATCTGCCGCGTCTCTCTACAAAACAACCAGTGACGTCATCACA
CACTTCCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAATCGACTTAGT
GAGTCCCTCGCGGGCGAACCAGGCCACAACAGATAGTAGGCGGGTGGTGT
CCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCAGTGAGGAAGC
ACAGACGGTGGCAGTGGCGAGAGGTGTGTATGGACACTGTTCCCGCGGCA
GTAATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGGGCCCAC
GAAGCTGGAGGAGTAGAGAGATTCGTAGACACCACGTCAGTAAGCATCAC
TCGAGGGAGAAGGGAGAACCGCGGGCACCGCGGGTAGGGAGTGCTGCACC
CTCCTCGTCAAAACACCACAGGCAAGAACCGAGCTCTGCAGAGATGGATT
GATGCGAGGAAATTCGCCGCTCGGAAAATACGGAAGAAAGCACACCCGCA
ACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGGCCGTCAAGGCGG
CTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTCGGCACGTTCAAC
GTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGGTCACAACGTGAT
GACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATGTGATAGGACTTC
AGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACACGACGGGTACGTG
ATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAAGAGGGGCGTACA
CGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGAGTGTGGGCGAGG
AAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCTGATGAAGGTGCGTTTA
CGAATTGGCCGCACCTGCGGAATAACTTTCGTGGTGAGGTACGCCCCCAC
GGAAACTGTCCGCACCACCGCGGGCGGTGATATTAACGCCAAGGACTCCT
TCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTCACAGCCATGACCAT
CTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAGGAGGCGAGACGG
GTGCTGCGATGCCAAGATTATGGGCGTGTACGGACGCGACATTATGAACA
ACAACGGGGAACGACTCCTTGGACTGGCATCAAACAATCAACTCTCCCTG
ACCAATACCTACTTCCGAACACCGTAA back to topCoding sequence (CDS) from alignment at Scaffold_544:189723..191499- >EsuBft5543_2a-0001 ID=EsuBft5543_2a-0001|Name=EsuBft5543_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1089bp|location=Sequence derived from alignment at Scaffold_544:189723..191499- (Ectocarpus subulatus male Bft15b)
ATGCTAGAGCCATCAGATGATCTAAAGAACACACACACTATTAGCAATAA
ATGGGTACGCAAGCCCGAGGAGGTACACCTGCAGTCCCTGCAGCACGTTT
GCATGCTCACAACTGAACTACACGCCCACACACTACAAATCGACTACAGC
AGCAGCATCACCCCCCTTGTCCCGCATTTAACCAAAATGAATATAGTAGG
CGGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCA
GTGAGGAAGCACAGACGGTGGCAGTGGCGAGAGGCAAGAACCGAGCTCTG
CAGAGATGGATTGATGCGAGGAAATTCGCCGCTCGGAAAATACGGAAGAA
AGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCAGCGG
CCGTCAAGGCGGCTGCGAAGAAGAAGGCACGAGAGGGCGACCTATCGTTC
GGCACGTTCAACGTACGCACGCTCGCCTACAGCGGTAGGAACCCCATCGG
TCACAACGTGATGACGGTCATGCAGATTTGTTCCGCGACCGGCTGTGATG
TGATAGGACTTCAGGAGACCCGACGAGAGGGGCAAGGTTCAATTGCACAC
GACGGGTACGTGATCATCTGGAGTGGCGCCCGTGCTGGCACCAAGGACAA
GAGGGGCGTACACGGTGTGGGCATAGCGATCAAGGAGACCATGTGGGAGA
GTGTGGGCGAGGAAGGTAGGAAGGTGGAGTGCATTGGTCCGAGGCTGATG
AAGGTGCGTTTACGAATTGGCCGCACCTGCGGAATAACTTTCGTGGTGAG
GTACGCCCCCACGGAAACTGTCCGCACCACCGCGGGCGGTGATATTAACG
CCAAGGACTCCTTCTGGACTGCTCTCGACGCAGTGATCCGGGAGGTTCAC
AGCCATGACCATCTCGTGGTGCTAATGGACGCCAACGCACGCACTGGTAG
GAGGCGAGACGGGTGCTGCGATGCCAAGATTATGGGCGTGTACGGACGCG
ACATTATGAACAACAACGGGGAACGACTCCTTGGACTGGCATCAAACAAT
CAACTCTCCCTGACCAATACCTACTTCCGAACACCGTAA back to top
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