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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7G873 |
| ProteomeId | EsuBft5518_2 |
| Protein domains | Coil |
| Protein domains | PTHR19446 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | rna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1480 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.41e-131 |
| EggNOG OGs | COG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG rclass | RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496 |
| KEGG ko | ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437 |
| KEGG Reaction | R00851,R03875,R03938,R04866,R04867,R09380 |
| KEGG Pathway | ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202 |
| KEGG Module | M00089 |
| EC | 2.1.1.43,2.3.1.15,3.6.4.12 |
| Description | acetylation-dependent protein binding |
| COG category | BK |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1480bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGTTTAGGGGAAGGGCATGATCCAGCTGATGGTACTGCTGTACAAA
TGGGTGTGGAAAAACGGGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTCAAGAAAGGAGACAAGACAGACCCAGGAAACTACATGG
GGATCACACTGTTGAACACAGTAGGAAAAATGTTCTGTAAGCTGCTGAAC
GATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCA
GGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAG
GGAGAATCATCCAAGAAATGGGCTGTGGACAATTGTCTAAGTACGGGATC
AAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAG
CGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGG
GGGTCCCACAAGAGGTAGTCTGGAAGGGAGCAGAAGTAGGGGGCAAGGAA
ACTTCGGTGTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGA
CACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTG
ATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGC
AACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGA
GGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAA
AAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAA
GCACGAGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATAC
ACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGGGT
ACGCCAGAAAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAATTGGCAAT
CCCTACGGTCGGGAAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGTCAAGGTTGTAAAGGACGTATGGAAGGGACTCGACA
TCGACGAAGATAAAACGCTGGAAGCGGAGGGTCTAAAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAATTTCAGGACCGGGGACATGGAAAGGACTTCGAGAACGTCGAC
GAATACATAGGATGGTAGACGAGGAAGACG back to topprotein sequence of EsuBft5518_2a-0001 >EsuBft5518_2 ID=EsuBft5518_2|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=479bp
MIQLMVLLYKWVWKNGYTPSRWREGVVVNLFKKGDKTDPGNYMGITLLNT
VGKMFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQEM
GCGQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQEVV
WKGAEVGGKETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSA
NVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNA
HMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPPLGYARKVWE
GNKKVVKIGNPYGREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKVVKDVWKGLDIDEDKTL
EAEGLKGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL
HGPMDAGTKLKVNFRTGDMERTSRTSTNT back to topmRNA from alignment at Scaffold_441:89792..91492+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1701bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTAGGGGAAGGGCATGATCCAGCTGATGGTACTGCTGTACAAA
TGGGTGTGGAAAAACGGGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTCAAGAAAGGAGACAAGACAGACCCAGGAAACTACATGG
GGATCACACTGTTGAACACAGTAGGAAAAATGTTCTGTAAGCTGCTGAAC
GATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCA
GGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAG
GGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTC
TTCCTCTGGACGTGAAAAAGGCATACGATACCGTATGGAGAAATGGGCTG
TGGACAATTGTCTAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGA
AGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTG
TCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTC
CCCAACATTATCCAAGTTTCATCAACAATCTGTTGGAAGTCGTAGAGGTA
GTCTGGAAGGGAGCAGAAGTAGGGGGCAAGGAAACTTCGGTGTCAGGAAT
GCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGC
AACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCT
GCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGA
ACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGG
ACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAAT
GCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCT
GCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGG
TTTTGAAGAGCGTAATCGTACCGCCGCTAGGGTACGCCAGAAAAGTATGG
GAAGGAAATAAGAAGGTAGTGAAGTAACTCGAGGCGGCCCAGATGAAAGC
AGCGAAAATCATCCCATTATAGGATGCTCCAAGCGCACAAGTAATGCAGC
CGTGAGGGCAGAATTGGCAATCCCTACGGTCGGGAAGAGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCAAGGTTGTAAAGG
ACGTATGGAAGGGACTCGACATCGACGAAGATAAAACGCTGGAAGCGGAG
GGTCTAAAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGA
AGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGT
ACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCA
ATGGATGCAGGAACAAAGCTTAAGGTCAATTTCAGGACCGGGGACATGGA
AAGGACTTCGAGAACGTCGACGAATACATAGGATGGTAGACGAGGAAGAC
G back to topCoding sequence (CDS) from alignment at Scaffold_441:89792..91492+ >EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1440bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)
ATGATCCAGCTGATGGTACTGCTGTACAAATGGGTGTGGAAAAACGGGTA
TACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTCAAGAAAG
GAGACAAGACAGACCCAGGAAACTACATGGGGATCACACTGTTGAACACA
GTAGGAAAAATGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATT
GGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGA
GGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGAAATG
GGCTGTGGACAATTGTCTAAGTACGGGATCAAGGGGAAAATGTGGAGAGT
GCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAG
AACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGAGGTAGTC
TGGAAGGGAGCAGAAGTAGGGGGCAAGGAAACTTCGGTGTCAGGAATGCT
GTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAAC
TGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCC
AACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACC
AGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACC
AGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCA
CACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCA
TCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTT
TGAAGAGCGTAATCGTACCGCCGCTAGGGTACGCCAGAAAAGTATGGGAA
GGAAATAAGAAGGTAGTGAAAATTGGCAATCCCTACGGTCGGGAAGAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCAAGG
TTGTAAAGGACGTATGGAAGGGACTCGACATCGACGAAGATAAAACGCTG
GAAGCGGAGGGTCTAAAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGC
CGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTC
TAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTA
CATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAATTTCAGGACCGG
GGACATGGAAAGGACTTCGAGAACGTCGACGAATACATAG back to top
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