EsuBft5518_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5518_2a-0001
Unique NameEsuBft5518_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_441contigScaffold_441:89792..91492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft5518_2
Protein domainsCoil
Protein domainsPTHR19446
Ownerapollo_admin@sb-roscoff.fr
Noterna-directed dna polymerase from mobile element jockey os:drosophila funebris gn:jockey\pol pe: [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1480
Hectar predicted targeting categoryother localisation
Evalue2.41e-131
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2aEsuBft5518_2aEctocarpus subulatus male Bft15bgeneScaffold_441 89792..91492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2a-0001EsuBft5518_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_441 89812..91472 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2a-0001-exonagat-exon-33789Ectocarpus subulatus male Bft15bexonScaffold_441 89792..90106 +
EsuBft5518_2a-0001-exonagat-exon-33790Ectocarpus subulatus male Bft15bexonScaffold_441 90182..90328 +
EsuBft5518_2a-0001-exonagat-exon-33788Ectocarpus subulatus male Bft15bexonScaffold_441 90387..90864 +
EsuBft5518_2a-0001-exonEsuBft5518_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_441 90953..91492 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2a-0001-exonagat-five_prime_utr-11581Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_441 89792..89811 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2a-0001-cdsEsuBft5518_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_441 89812..90106 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5518_2a-0001-exonagat-three_prime_utr-18256Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_441 91473..91492 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1480bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGTTTAGGGGAAGGGCATGATCCAGCTGATGGTACTGCTGTACAAA
TGGGTGTGGAAAAACGGGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTCAAGAAAGGAGACAAGACAGACCCAGGAAACTACATGG
GGATCACACTGTTGAACACAGTAGGAAAAATGTTCTGTAAGCTGCTGAAC
GATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCA
GGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAG
GGAGAATCATCCAAGAAATGGGCTGTGGACAATTGTCTAAGTACGGGATC
AAGGGGAAAATGTGGAGAGTGCTGAAGAAGATGACAGAGTGTACGAAAAG
CGCGGTCATGCTAGACGGAGAACTGTCAAAATTCTTCGACATTGAGCAGG
GGGTCCCACAAGAGGTAGTCTGGAAGGGAGCAGAAGTAGGGGGCAAGGAA
ACTTCGGTGTCAGGAATGCTGTTTGCGGATGATTTTGTCGGTATGTCGGA
CACCCCTGAGGGACTGCAACTGCAAATTGACGCGGCGAAGAAGTTTACTG
ATAAGTGGAGATTGTCTGCCAACGTTCAGAAGAGTGCCGTCATGGTATGC
AACGAGAACAAGGAGGAACCAGTAGAACATAGATGGAAGTGGGGGATCGA
GGAGATTGCAGTAGTGGACCAGTACACATACCTCGGAGTAGAGATCGCAA
AAGACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAA
GCACGAGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATAC
ACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGGGT
ACGCCAGAAAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAATTGGCAAT
CCCTACGGTCGGGAAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGGGTCAAGGTTGTAAAGGACGTATGGAAGGGACTCGACA
TCGACGAAGATAAAACGCTGGAAGCGGAGGGTCTAAAGGGGTTCAAGGAG
AAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAAGA
ATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGGAA
TAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGCTT
AAGGTCAATTTCAGGACCGGGGACATGGAAAGGACTTCGAGAACGTCGAC
GAATACATAGGATGGTAGACGAGGAAGACG
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protein sequence of EsuBft5518_2a-0001

>EsuBft5518_2 ID=EsuBft5518_2|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=479bp
MIQLMVLLYKWVWKNGYTPSRWREGVVVNLFKKGDKTDPGNYMGITLLNT
VGKMFCKLLNDRIVGVLEKEHSISEGQAGFRKKRGCVDHVFTVGRIIQEM
GCGQLSKYGIKGKMWRVLKKMTECTKSAVMLDGELSKFFDIEQGVPQEVV
WKGAEVGGKETSVSGMLFADDFVGMSDTPEGLQLQIDAAKKFTDKWRLSA
NVQKSAVMVCNENKEEPVEHRWKWGIEEIAVVDQYTYLGVEIAKDCSWNA
HMSKVAEKGKARAGKLHPILANRHLDTRIKLTVLKSVIVPPLGYARKVWE
GNKKVVKIGNPYGREEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVKVVKDVWKGLDIDEDKTL
EAEGLKGFKEKISVACAEREEQNLRKESKDKEGLEVYGMLKEGIGFKDYL
HGPMDAGTKLKVNFRTGDMERTSRTSTNT
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mRNA from alignment at Scaffold_441:89792..91492+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1701bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)
ATGAAGTTTAGGGGAAGGGCATGATCCAGCTGATGGTACTGCTGTACAAA
TGGGTGTGGAAAAACGGGTATACGCCAAGTAGATGGAGGGAAGGAGTGGT
TGTGAACTTGTTCAAGAAAGGAGACAAGACAGACCCAGGAAACTACATGG
GGATCACACTGTTGAACACAGTAGGAAAAATGTTCTGTAAGCTGCTGAAC
GATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGGGCCA
GGCAGGTTTCCGCAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGGTAG
GGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTGCTTC
TTCCTCTGGACGTGAAAAAGGCATACGATACCGTATGGAGAAATGGGCTG
TGGACAATTGTCTAAGTACGGGATCAAGGGGAAAATGTGGAGAGTGCTGA
AGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAGAACTG
TCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTGCACGCTGTC
CCCAACATTATCCAAGTTTCATCAACAATCTGTTGGAAGTCGTAGAGGTA
GTCTGGAAGGGAGCAGAAGTAGGGGGCAAGGAAACTTCGGTGTCAGGAAT
GCTGTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGC
AACTGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCT
GCCAACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGA
ACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGG
ACCAGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAAT
GCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCT
GCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGG
TTTTGAAGAGCGTAATCGTACCGCCGCTAGGGTACGCCAGAAAAGTATGG
GAAGGAAATAAGAAGGTAGTGAAGTAACTCGAGGCGGCCCAGATGAAAGC
AGCGAAAATCATCCCATTATAGGATGCTCCAAGCGCACAAGTAATGCAGC
CGTGAGGGCAGAATTGGCAATCCCTACGGTCGGGAAGAGANNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCAAGGTTGTAAAGG
ACGTATGGAAGGGACTCGACATCGACGAAGATAAAACGCTGGAAGCGGAG
GGTCTAAAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGA
AGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGT
ACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCA
ATGGATGCAGGAACAAAGCTTAAGGTCAATTTCAGGACCGGGGACATGGA
AAGGACTTCGAGAACGTCGACGAATACATAGGATGGTAGACGAGGAAGAC
G
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Coding sequence (CDS) from alignment at Scaffold_441:89792..91492+

>EsuBft5518_2a-0001 ID=EsuBft5518_2a-0001|Name=EsuBft5518_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1440bp|location=Sequence derived from alignment at Scaffold_441:89792..91492+ (Ectocarpus subulatus male Bft15b)
ATGATCCAGCTGATGGTACTGCTGTACAAATGGGTGTGGAAAAACGGGTA
TACGCCAAGTAGATGGAGGGAAGGAGTGGTTGTGAACTTGTTCAAGAAAG
GAGACAAGACAGACCCAGGAAACTACATGGGGATCACACTGTTGAACACA
GTAGGAAAAATGTTCTGTAAGCTGCTGAACGATAGGATAGTGGGAGTATT
GGAGAAGGAACATAGCATTAGTGAGGGCCAGGCAGGTTTCCGCAAGAAGA
GGGGGTGCGTAGACCACGTGTTCACGGTAGGGAGAATCATCCAAGAAATG
GGCTGTGGACAATTGTCTAAGTACGGGATCAAGGGGAAAATGTGGAGAGT
GCTGAAGAAGATGACAGAGTGTACGAAAAGCGCGGTCATGCTAGACGGAG
AACTGTCAAAATTCTTCGACATTGAGCAGGGGGTCCCACAAGAGGTAGTC
TGGAAGGGAGCAGAAGTAGGGGGCAAGGAAACTTCGGTGTCAGGAATGCT
GTTTGCGGATGATTTTGTCGGTATGTCGGACACCCCTGAGGGACTGCAAC
TGCAAATTGACGCGGCGAAGAAGTTTACTGATAAGTGGAGATTGTCTGCC
AACGTTCAGAAGAGTGCCGTCATGGTATGCAACGAGAACAAGGAGGAACC
AGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCAGTAGTGGACC
AGTACACATACCTCGGAGTAGAGATCGCAAAAGACTGCTCGTGGAATGCA
CACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCAGGGAAGCTGCA
TCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGACGGTTT
TGAAGAGCGTAATCGTACCGCCGCTAGGGTACGCCAGAAAAGTATGGGAA
GGAAATAAGAAGGTAGTGAAAATTGGCAATCCCTACGGTCGGGAAGAGAN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTCAAGG
TTGTAAAGGACGTATGGAAGGGACTCGACATCGACGAAGATAAAACGCTG
GAAGCGGAGGGTCTAAAGGGGTTCAAGGAGAAGATATCTGTTGCTTGTGC
CGAGAGAGAAGAACAGAATCTGAGGAAAGAATCCAAGGATAAGGAGGGTC
TAGAAGTGTACGGAATGTTGAAGGAAGGAATAGGGTTCAAGGACTACCTA
CATGGACCAATGGATGCAGGAACAAAGCTTAAGGTCAATTTCAGGACCGG
GGACATGGAAAGGACTTCGAGAACGTCGACGAATACATAG
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