EsuBft5492_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5492_2a-0001
Unique NameEsuBft5492_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_630contigScaffold_630:523774..525299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI53028
ProteomeIdEsuBft5492_2
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-noTM
Protein domainsIPR027806
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsPTHR22930
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Max annot lvl4776|Peronosporales
Length87
Evalue1.51e-36
EggNOG OGsKOG4585@1|root,KOG4585@2759|Eukaryota,3QI3U@4776|Peronosporales
Date last modified2016-06-14
Date creation2016-06-14
Descriptionnuclease activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5492_2aEsuBft5492_2aEctocarpus subulatus male Bft15bgeneScaffold_630 523774..525299 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5492_2a-0001-exonEsuBft5492_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_630 523774..524496 -
EsuBft5492_2a-0001-exonagat-exon-28480Ectocarpus subulatus male Bft15bexonScaffold_630 525153..525299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5492_2a-0001-cdsEsuBft5492_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_630 523774..524496 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5492_2a-0001-exonagat-five_prime_utr-11569Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_630 525291..525299 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5492_2a-0001EsuBft5492_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_630 523774..525290 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5492_2a-0001 ID=EsuBft5492_2a-0001|Name=EsuBft5492_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=870bp|location=Sequence derived from alignment at Scaffold_630:523774..525299- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCCTTCATGTTTGGCTTGTCGAGGGCGGTCACGTTCGCTATCTTGTG
GCAAGTGATCGATGCCATCAACGAGACGCCTGCGATCGGGGCATTTGACT
TCCTCCTGACCGAGGAAGGCTGCATGCGAAACGCCAACAGATTCAAGGAG
AAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCT
GTTCATCAAGGCCAAGGCTTCGTATGCGAAAGACACCGCCGACGTCCTCG
CGTACTACTCTGGCAGCAAGTCCGCGTACGGCATCAGCATACAAGCGATG
TGCACCGCCGACTACCGGTTTTACGCGATGTCGGCGACCTCACCAGGCTC
TACGAACGACTGGGTAGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCG
CCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATC
GGAGAAAAGCTTCTGACTCCGTACCCTGGGAGGCTCCTGCCGGCGGGTGA
GGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGA
GCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAGACCTCTCCGC
GTGCAGTTCGCAGGACGCGCGGATCTCATCACGGCTCTTTTCCATCTGCA
CAACTTCCTGCAAGACGAGAAGGTATCGCCGATCCAGGTTGCAGAGGAGG
ACTCGCGCAGCGGACGCAACCGGCCGGCCCTCTGTGCTACGCAGCGCACC
TTGCCGGATGGCTGGCAAACGGAGCAGCCGGCTCCTTCGAGGAGCGGTGA
GACCACGGCCCGAGCGGCTATCCGCACGGCCCTGGAGTTGAAGAAGCAGT
GCAGGCCGGACTACANNNNN
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protein sequence of EsuBft5492_2a-0001

>EsuBft5492_2 ID=EsuBft5492_2|Name=EsuBft5492_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=287bp
MFGLSRAVTFAILWQVIDAINETPAIGAFDFLLTEEGCMRNANRFKEKST
DGIFSWVVAAVDGLFIKAKASYAKDTADVLAYYSGSKSAYGISIQAMCTA
DYRFYAMSATSPGSTNDWVAWNRSSLAKAVARLPAGFHIIGDAAYPIGEK
LLTPYPGRLLPAGEDSFNFHLSQLRVKIEQSFGILVSTWGILWRPLRVQF
AGRADLITALFHLHNFLQDEKVSPIQVAEEDSRSGRNRPALCATQRTLPD
GWQTEQPAPSRSGETTARAAIRTALELKKQCRPDYXX
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mRNA from alignment at Scaffold_630:523774..525299-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5492_2a-0001 ID=EsuBft5492_2a-0001|Name=EsuBft5492_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1526bp|location=Sequence derived from alignment at Scaffold_630:523774..525299- (Ectocarpus subulatus male Bft15b)
GTTGCCTTCATGTTTGGCTTGTCGAGGGCGGTCACGTTCGCTATCTTGTG
GCAAGTGATCGATGCCATCAACGAGACGCCTGCGATCGGGGCATTTGACT
TCCTCCTGACCGAGGAAGGCTGCATGCGAAACGCCAACAGATTCAAGGTG
AGACCTAACGGTGGTCAGTACTGCAACTACGGTTATTCTTGACGGCACTC
TTTCGACCAACCGCGGGATATCGTGTATTTTTTCACGTCTGCTGTTTCCA
GCCGTTTTAGCGTAGGGAGGACTATCTATACGCAGCCCTCGTTGATAAGA
GAGAAACAAAAATGTTGTCGCCGGGGGGTACGAGTTCGGGTTGTCATCGT
GGTCAGCATGGTTCGAACCGAAAAATATCCCCCGGGACCCGGGTGGTTCG
CCAGCTTTCGGTGTCCTTGGCCAAGTAAATATTGTTGTCATCCTTTGTGT
ATGCTGGCCACGTTGGTTCGGCCCCGCAACAGCAGTGGCCCGGCAACAGC
TTTAGCGATACAAGAGTGTGGAATCAATGCAGTCACCTCCGTGGCTCTAA
AATGCCCTGATACCTTTGTACCGCTGTACGTGACGCAGTATGATTATGAT
TATGATTATCAAACGGCCCAACTCTCAGTTTACATGGTATGCCCGCCGTT
GCTGGCGATGGCGCCGTCGCCGATGACATCAACCCACACAACGTACAGCT
GAACACTGTTACCAATTTTTGTCAAGGTATCTCTCGACTTATTTTATATC
CCTTCCCGACACTGCTACTTTCCCGCCCTCGTGTCTGCCGTCTACAAATG
CAGGAGAAGAGCACCGATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGA
TGGTCTGTTCATCAAGGCCAAGGCTTCGTATGCGAAAGACACCGCCGACG
TCCTCGCGTACTACTCTGGCAGCAAGTCCGCGTACGGCATCAGCATACAA
GCGATGTGCACCGCCGACTACCGGTTTTACGCGATGTCGGCGACCTCACC
AGGCTCTACGAACGACTGGGTAGCATGGAATCGATCTTCCCTCGCCAAGG
CCGTCGCCCGCTTGCCCGCCGGATTTCACATCATTGGTGACGCCGCCTAC
CCCATCGGAGAAAAGCTTCTGACTCCGTACCCTGGGAGGCTCCTGCCGGC
GGGTGAGGACTCGTTCAACTTCCACCTGAGCCAGCTTCGTGTCAAGATCG
AGCAGAGCTTCGGCATCCTGGTTTCGACTTGGGGCATTCTGTGGAGACCT
CTCCGCGTGCAGTTCGCAGGACGCGCGGATCTCATCACGGCTCTTTTCCA
TCTGCACAACTTCCTGCAAGACGAGAAGGTATCGCCGATCCAGGTTGCAG
AGGAGGACTCGCGCAGCGGACGCAACCGGCCGGCCCTCTGTGCTACGCAG
CGCACCTTGCCGGATGGCTGGCAAACGGAGCAGCCGGCTCCTTCGAGGAG
CGGTGAGACCACGGCCCGAGCGGCTATCCGCACGGCCCTGGAGTTGAAGA
AGCAGTGCAGGCCGGACTACANNNNN
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Coding sequence (CDS) from alignment at Scaffold_630:523774..525299-

>EsuBft5492_2a-0001 ID=EsuBft5492_2a-0001|Name=EsuBft5492_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=861bp|location=Sequence derived from alignment at Scaffold_630:523774..525299- (Ectocarpus subulatus male Bft15b)
ATGTTTGGCTTGTCGAGGGCGGTCACGTTCGCTATCTTGTGGCAAGTGAT
CGATGCCATCAACGAGACGCCTGCGATCGGGGCATTTGACTTCCTCCTGA
CCGAGGAAGGCTGCATGCGAAACGCCAACAGATTCAAGGAGAAGAGCACC
GATGGCATTTTCTCCTGGGTCGTCGCCGCCGTGGATGGTCTGTTCATCAA
GGCCAAGGCTTCGTATGCGAAAGACACCGCCGACGTCCTCGCGTACTACT
CTGGCAGCAAGTCCGCGTACGGCATCAGCATACAAGCGATGTGCACCGCC
GACTACCGGTTTTACGCGATGTCGGCGACCTCACCAGGCTCTACGAACGA
CTGGGTAGCATGGAATCGATCTTCCCTCGCCAAGGCCGTCGCCCGCTTGC
CCGCCGGATTTCACATCATTGGTGACGCCGCCTACCCCATCGGAGAAAAG
CTTCTGACTCCGTACCCTGGGAGGCTCCTGCCGGCGGGTGAGGACTCGTT
CAACTTCCACCTGAGCCAGCTTCGTGTCAAGATCGAGCAGAGCTTCGGCA
TCCTGGTTTCGACTTGGGGCATTCTGTGGAGACCTCTCCGCGTGCAGTTC
GCAGGACGCGCGGATCTCATCACGGCTCTTTTCCATCTGCACAACTTCCT
GCAAGACGAGAAGGTATCGCCGATCCAGGTTGCAGAGGAGGACTCGCGCA
GCGGACGCAACCGGCCGGCCCTCTGTGCTACGCAGCGCACCTTGCCGGAT
GGCTGGCAAACGGAGCAGCCGGCTCCTTCGAGGAGCGGTGAGACCACGGC
CCGAGCGGCTATCCGCACGGCCCTGGAGTTGAAGAAGCAGTGCAGGCCGG
ACTACANNNNN
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