EsuBft546_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_9a-0001
Unique NameEsuBft546_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:277255..283044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog4792.ETI43728
ProteomeIdEsuBft546_9
Protein domainsPTHR12741
Protein domainsG3DSA
Protein domainsIPR023175
Protein domainsPF04652
Ownerapollo_admin@sb-roscoff.fr
Noteprotein homolog of mammalian lyst-interacting protein 5 os:arabidopsis thaliana gn:lip5 pe:1 sv [Automatic annotation]
Nb exon5
Max annot lvl4776|Peronosporales
Length1299
Hectar predicted targeting categoryother localisation
Evalue7.48e-44
EggNOG OGsKOG0917@1|root,KOG0917@2759|Eukaryota,3Q7C6@4776|Peronosporales
Date last modified2016-06-15
Date creation2016-06-15
KEGG koko:K12199
KEGG Pathwayko04144,map04144
DescriptionVta1 like
COG categoryS
BRITEko00000,ko00001,ko04131
Cross References
External references for this mRNA
DatabaseAccession
GO0006810
GO0031227
GO0016020
GO0043231
GO0061024
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_9aEsuBft546_9aEctocarpus subulatus male Bft15bgeneScaffold_417 277255..283044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_9a-0001EsuBft546_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 277255..282927 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_9a-0001-exonagat-exon-109184Ectocarpus subulatus male Bft15bexonScaffold_417 277255..277938 -
EsuBft546_9a-0001-exonagat-exon-109183Ectocarpus subulatus male Bft15bexonScaffold_417 278848..278996 -
EsuBft546_9a-0001-exonagat-exon-109182Ectocarpus subulatus male Bft15bexonScaffold_417 280004..280103 -
EsuBft546_9a-0001-exonEsuBft546_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 280833..280917 -
EsuBft546_9a-0001-exonagat-exon-109185Ectocarpus subulatus male Bft15bexonScaffold_417 282764..283044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_9a-0001-cdsEsuBft546_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 277255..277938 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_9a-0001-exonagat-five_prime_utr-11548Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 282928..283044 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_9a-0001 ID=EsuBft546_9a-0001|Name=EsuBft546_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1299bp|location=Sequence derived from alignment at Scaffold_417:277255..283044- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGAATCATTCCGCCGCACCTTCTGTGTAGAGACTGGAGAGCGACGTGGAG
CAGGACATAAGTGCGCTGCTGGTCAAAAGGGAGATCCGCTCATACGACGG
TAGCAGTAGCCCTGAGTATGGCGATGTCTATTCCTCCCGGGCTGAAGCCC
GTGACGCAGTACGTGCGCCGGGCGGAGAGGCTAGACAAGGCTCCCGAGCC
CGAGGCGCCGGTGGTCGCGTACCACTGCCGAATGTACGCGACTGAACAGG
CAATGAAGCTGCAGGACAACTCCGAAGCAGGGAAGGCGTTCATTATGTCG
ATGATCGGACGTCTGGAGGAGGACAAGAAGAAGGGGATGGCGCAATTCTC
CCGGGAAGAGGGCCAGAAAATGACGATGGAGTGGGCGATGAGAGAGTTCA
ACGCGGCAGACGAGGAGGATAGGGCTGGGCTCGCTGACCAGGGCACCGCG
CGGACATTTTACGCCGCTGGAGTGTTCTTCGACGTGCTTCGTCAGTTCGG
TGCCCCCGACGAGGAGATGGACCGCAGACGCATCTACTGCAAGTGGAAGG
CCTCGCAGATCCTCAAGGCTCTCAAGGAGGGGAAGATACCGACTCCCGGG
GGGGCTGGGGAGGACGTCGTTACAGGAATGCCTTCCGGCAACGATGCAGC
AGCACCGGCGCCGGCTCCGGAGGCAACGGAAATTCCTTCTTCTAGCGGAG
GCGGAGGCGGAGGCGGCAGCTTCGGCGGCGGCGGGTATGGCGGTGGCACC
GACGAATCGAAGCAGAACGACCCCCTAGCCGGACTGATCCCCGAAGCCCC
CAAGGACAACCCTTTCCTCAGCCCCTCGCCCACCCACGAAGAAGAAGCAG
CAGCGGCAGCCGTTGACGCCACGCCACCAGCTTCATCACCTTACCACCAG
CCTCAGCCGTACGGGGGCGGCGGCGGCCCAGGCCCGGAAGCCGCTGCAGC
AGCGGGGTACCCGGGCGTGGCCGCCCCGTCCCCGTACGCAAGACCAGGGC
CGCCGGCCCCCGAGCCCGCTCCGTACGTGGCGCCCGTGGCCCCAGCCCCC
TCTCCCTACGCGGCGCCGGCACCGGCGCCTGCAGCGCCGCGGCCGAGGTA
CGATCCGTCGACGCGGCCGAGGACGCCCGTGCCGTCCCCGGCCGGGCCGC
GGAGATCGGGCAGCGGCGGCGGCAGGGTGATGGAGGGCAACATGGCGGAC
GCGATGGAGCACTGCAAGTTCGCCTTGCGGGCGCTGGAGAAGAAGGATGT
GGACCTCGCGGTGCAGAAACTGCACGAAGCCCTGCAGCAGCTCACATAG
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protein sequence of EsuBft546_9a-0001

>EsuBft546_9 ID=EsuBft546_9|Name=EsuBft546_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=393bp
MAMSIPPGLKPVTQYVRRAERLDKAPEPEAPVVAYHCRMYATEQAMKLQD
NSEAGKAFIMSMIGRLEEDKKKGMAQFSREEGQKMTMEWAMREFNAADEE
DRAGLADQGTARTFYAAGVFFDVLRQFGAPDEEMDRRRIYCKWKASQILK
ALKEGKIPTPGGAGEDVVTGMPSGNDAAAPAPAPEATEIPSSSGGGGGGG
SFGGGGYGGGTDESKQNDPLAGLIPEAPKDNPFLSPSPTHEEEAAAAAVD
ATPPASSPYHQPQPYGGGGGPGPEAAAAAGYPGVAAPSPYARPGPPAPEP
APYVAPVAPAPSPYAAPAPAPAAPRPRYDPSTRPRTPVPSPAGPRRSGSG
GGRVMEGNMADAMEHCKFALRALEKKDVDLAVQKLHEALQQLT
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mRNA from alignment at Scaffold_417:277255..283044-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_9a-0001 ID=EsuBft546_9a-0001|Name=EsuBft546_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5790bp|location=Sequence derived from alignment at Scaffold_417:277255..283044- (Ectocarpus subulatus male Bft15b)
TGAATCATTCCGCCGCACCTTCTGTGTAGAGACTGGAGAGCGACGTGGAG
CAGGACATAAGTGCGCTGCTGGTCAAAAGGGAGATCCGCTCATACGACGG
TAGCAGTAGCCCTGAGTATGGCGATGTCTATTCCTCCCGGGCTGAAGCCC
GTGACGCAGTACGTGCGCCGGGCGGAGAGGCTAGACAAGGCTCCCGAGCC
CGAGGCGCCGGTGGTCGCGTACCACTGCCGAATGTACGCGACTGAACAGG
CAATGAAGCTGCAGGACAACTCCGAAGCAGGGTGAGCGTGCTGCTGGCTT
TTTCGATGAGGGGAAATGCACCAGTGCATAAGTTGTTGTGAGCACGCTTG
TGAATGATTATGTTACAGCGATGATGTGTTGGTATCGACGTATCGACTGC
TTGTAGGGAAGAATAGGTAGACGCGGCTGTTTTCGGCATGAGAGCCGATT
TGAGACGGGGCGGAAGTTGTTCACACTTGCAACAGGTAGCTGACACGCGC
TATTCAAACAAGGGATGAAGTAACGATCAACGGCGCCACCCGCTGGCATG
AAGCAAATAAAAGCAAACGATGTATACGTGCTGCACATGCAGCAGGTTGG
GATGTTCTCGTGAACACAGCGAAAATATATGCAGGTTGTGAAGAACCCGG
AGAACTTTCTCGAGGTTATTCGCGAATTCCTTCTACAGCAGTAATCCAGT
CTCTCGAGAACAGACGAACTCGCGAAGGCATTGCGTTGAGATGTTGCAAC
CGAACGTCTTTTCTGAACGTAGCTCCTTGCTTCCTGAGACTTGGCTCTGT
TACGTTGCTGCCTCTCTCGGCGTGCCCACATGCAATCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCCCCCCCCTTTTTTTATTTCGTTGCCCAGGAGTAAGACCACAT
TTCTTCCCCCCTGCGGTGTTGACCTTCCCGCCCCAAGTCTTCAGCAATCC
CCTCACGACTGCTGTATACTACACTGTACAATTGTGTGCTGAGCAAGCAG
TCTACATGAGGACCGCATCGTAAAGACATAGCAGTCTGACGCGTGGTTCG
TTGATGCCACCCGCTGTATCTGACAATCATCGAGTCGCTGTTGGTGAAAG
AAAGCCTTCTTATACAGTCGCTGGTCTGCTGTGCACAAGAAGGGCAAACG
GGGTCTGTTCTGTCGGTTCTTAAGTCCCATCGTCCTTAATCGTTGTGTCC
AGAATTTGTCTGGCGAAGGTTGTCTGCCTATTCTCGATTTTTTTTGTTCT
CGAACAACGATTGAATAGATCAAACACGCTATTTAGCGCAGATACACCAT
TGTATTGATGACGATGCGTTCATAACAGTACCGCCGGACTGTTGAGTACC
GAATTAAACGATAAGAATTAAATTATAAGACGTTGACGACCATCTTTGGC
GGCATTTCTCAATTTTCATGAAATCAAGAAACATGCGCTTTGAACATAAT
TTCAATATTTGCTCGATAGATGATTTGTTCGTGGACGCACGTTTTGTTGG
AACTCGCTTCTGTTCACGCATCTCCGTCCAACGCTGTTCGTCTACAATAT
GCCATTTGAGGTGGGCACATCAACGCGCACGACTGGGACGCAATTGGTTG
TTCAAGATGAAAGTCTGCATCCTCACCTATCCGTGCCCAGGCGCTGTCTT
CCGAGATTCTGCCGGTCTGTTCGTTGTTGTTCTCGCTCCAGTGTATATAT
GCGCATGTTTTTTGAGAAAATAACTCGCGCGACCCGATTGTAATGACTGC
AATAATTGGACACATGGACGTTTGCAGGAAGGCGTTCATTATGTCGATGA
TCGGACGTCTGGAGGAGGACAAGAAGAAGGGGATGGCGCAATTCTCCCGG
GAAGAGGGCCAGGTGCGGTGTCGTGAACAAACCCAAGCGTACCGTGTTGG
ACCCCTTATGACGATGACTCCCCTCCCCCTGCTATGACGAACTAGCTGCA
CGCTCGATGATTTTGTTGCTGGTGTTGGGAACGCTTTGCCTGGGTTTCTG
TACAGTAAGGGGTTGGGCCGTAAACGCTTTCCCCGTAGCAGATGAAAGCA
ACTTCGAATGTCGTCTCAGACGGTGTGCTTGTACACGGTAGGCCCCTTTG
CGCAACCTTGTTCATGCTGTCGTTACGTCGATGCTGCTGCTAAATATTTC
CTATCATGACTGGACTGCAGCGCCTACTCTTCAGGGACAACCCCCCGCAG
CAAATCACGCACGGCTTTCGTACAGAGTACGCGGGTGGGCTGGTCGTAAA
GTTACAAAAACATCTAGGATGAAAAATGCTTCTTTCAACAAGAAAACGCT
GGTACAAGTACTCCCCCCCCCGGCCTGATGGAACCCCCTCGGCCTTTGTT
CTACGCCTGGGCTCTCAGCGCCAAAATTTGCCATGCGCAACGGAGGGATC
GTAGCCTATAGCTTCCCCACTACCCCGGTCTACATCCAGTCGTAACACTT
GGAGAACCCCCGGCATAACCAATCAATCCTCTGCCCCCTTCCCGTCGTCC
TCGTAGAAGTATGCGTTTTGCCTCAGGCGAAGACTAGCTTTACTGCTGTG
CGCCCACAATCTCTCAAACTAACAAATACTGCATTTCTCAGAAAATGACG
ATGGAGTGGGCGATGAGAGAGTTCAACGCGGCAGACGAGGAGGATAGGGC
TGGGCTCGCTGACCAGGGCACCGCGCGGACATTTTACGCCGGTAAGATAG
TACCGAAAGCACTAAAGCCCTAACCCTAAACCTGACCCTAACCGTAATGT
GAAGACGACAAGAACAAGAACAACAACTGAATGAGAAAGAATACTGCTCG
GATGTGCTTGTGTGTAATCGTTGGGAGTGACGCGGGGTGCGAAGGGAGAG
TGCTCGGTGTTCTTGCAGGCAGGCGTTCGTGTTGATGGGGTGGTAGTGTC
GATCTTGTTTCTTTTCTTGGTTGGCGGATGTGCCGTGGTTTTGTTATTGG
GAGGGTTGGTTATGTTGTTGTGGTTGTGCAAGGGAGGTACTGTAGCCGGT
GGTGGCGATGCTGTGGTGGTGGGTGTGGTTGTGTTGTTTTTTTAGGTGGC
GGTGAATGTTTTTTACGTTGCTATCCCAGATGGATGGCGGAGGAAGGGAA
CAACGGTGTTGCACCCGAGACACGGCGACGACCTCCCATCTCAGGACCTC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNCACGGC
GACGACCTCCCATCTCAGGACCTCCCCCCCCCAACGCCCCCTCCAACTCC
CTGCAGTCACGACGCCCCCCCGCACCTCTCTCTTCCGTCGCCCCCCGCGA
CTACCTACGCCCCAAAGCGTTGTTTTTTGTCTATCACAATGCCATTAAAG
TGTGATTGCCGAGGTGTTGTGCCTGTACATGTGCATCCTTGCATACTTGG
GAGGTATCCCATCAGCTATGCTTCTCAAGCAGGAGGCGTGATTGGTCAAT
GGTCGAATACTGATCAACGTCGAGCACCACCAGAGTGCAGCCCCCCCCCC
CCCCCCCCNNNNNNGTCTCTTATACACATCTCCCCCCCAATATCCGTGTG
GAGACCTCCCCAGTATAGTTTTGAAATAGACCCCACCCCCGTCCACGCGA
GGCCGATGGTCTAACGACTACGGCATGTCTTCACATGAGTACCCCCCCCC
CTCCCCCCCCCATGCCCTGCTTCCCCCCAATTTTTTCTTTTTGCACAGCT
GGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGTGCCCCCGACGAGGAGAT
GGACCGCAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAGG
CTCTCAAGGAGGGGAAGATACCGACTCCCGGGGGGGCTGGGGAGGACGTG
AGTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCGAGTGTTTTCTGGGGGGGGGGTGTTTCTTGGGACAGT
CGTAGTGGATTAACACAGTTTTCCTGTTTTTCATTGTCGTTGTTTTGCTT
CGTTTCAAAGGGGCGGGGGCGGAACACTTAGGCGGGGGAGTTTATTCTCT
TCGGCACCTGCATAGAGAGAAGAGAGAATGGGAGTAGGAGAGTGGAGTAA
GAAAGAGAGAAAGAGACAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGACAGAGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGACAGAGACAGAGACAGAGACAGAGACAGAG
ACAGAGAGACAGAGACAGAGACAGAGACAGAGAGACAGAGACAGAGACAG
AGAGAGACCTCTCTACACCGAAGGGGGCACAGCTACAGCACGGCACTTAA
TACGACCCGCGTCCACCCCCCACCAACCCTGTACCATCGGCGTAGATGTG
CGTCTTCGCATCTTCGTCTTCTTCTTGTCATGCTTACCTATACAAGTCAA
CTTCTGCACGTTCGCAACGACCATCGCGTCTTGCATTGCTGTCAGTTCAT
GGCGAATGTTGCCGTGTGGTCACCAGTGAACGGGGAGCTGTGCCGCTTGG
CTGTTCCCATCGCATCGCCTCGACAAAAGCTGACCCAGCACAACGAATAT
TCCGCCGCATTTTTTCCCTCGCGGGATCACCCACCACCACCTTACCTCCT
CACCAGGTCGTTACAGGAATGCCTTCCGGCAACGATGCAGCAGCACCGGC
GCCGGCTCCGGAGGCAACGGAAATTCCTTCTTCTAGCGGAGGCGGAGGCG
GAGGCGGCAGCTTCGGCGGCGGCGGGTATGGCGGTGGCACCGACGAATCG
AAGCAGAACGACCCCCTAGCCGGACTGATCCCCGAAGCCCCCAAGGACAA
CCCTTTCCTCAGCCCCTCGCCCACCCACGAAGAAGAAGCAGCAGCGGCAG
CCGTTGACGCCACGCCACCAGCTTCATCACCTTACCACCAGCCTCAGCCG
TACGGGGGCGGCGGCGGCCCAGGCCCGGAAGCCGCTGCAGCAGCGGGGTA
CCCGGGCGTGGCCGCCCCGTCCCCGTACGCAAGACCAGGGCCGCCGGCCC
CCGAGCCCGCTCCGTACGTGGCGCCCGTGGCCCCAGCCCCCTCTCCCTAC
GCGGCGCCGGCACCGGCGCCTGCAGCGCCGCGGCCGAGGTACGATCCGTC
GACGCGGCCGAGGACGCCCGTGCCGTCCCCGGCCGGGCCGCGGAGATCGG
GCAGCGGCGGCGGCAGGGTGATGGAGGGCAACATGGCGGACGCGATGGAG
CACTGCAAGTTCGCCTTGCGGGCGCTGGAGAAGAAGGATGTGGACCTCGC
GGTGCAGAAACTGCACGAAGCCCTGCAGCAGCTCACATAG
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Coding sequence (CDS) from alignment at Scaffold_417:277255..283044-

>EsuBft546_9a-0001 ID=EsuBft546_9a-0001|Name=EsuBft546_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1182bp|location=Sequence derived from alignment at Scaffold_417:277255..283044- (Ectocarpus subulatus male Bft15b)
ATGGCGATGTCTATTCCTCCCGGGCTGAAGCCCGTGACGCAGTACGTGCG
CCGGGCGGAGAGGCTAGACAAGGCTCCCGAGCCCGAGGCGCCGGTGGTCG
CGTACCACTGCCGAATGTACGCGACTGAACAGGCAATGAAGCTGCAGGAC
AACTCCGAAGCAGGGAAGGCGTTCATTATGTCGATGATCGGACGTCTGGA
GGAGGACAAGAAGAAGGGGATGGCGCAATTCTCCCGGGAAGAGGGCCAGA
AAATGACGATGGAGTGGGCGATGAGAGAGTTCAACGCGGCAGACGAGGAG
GATAGGGCTGGGCTCGCTGACCAGGGCACCGCGCGGACATTTTACGCCGC
TGGAGTGTTCTTCGACGTGCTTCGTCAGTTCGGTGCCCCCGACGAGGAGA
TGGACCGCAGACGCATCTACTGCAAGTGGAAGGCCTCGCAGATCCTCAAG
GCTCTCAAGGAGGGGAAGATACCGACTCCCGGGGGGGCTGGGGAGGACGT
CGTTACAGGAATGCCTTCCGGCAACGATGCAGCAGCACCGGCGCCGGCTC
CGGAGGCAACGGAAATTCCTTCTTCTAGCGGAGGCGGAGGCGGAGGCGGC
AGCTTCGGCGGCGGCGGGTATGGCGGTGGCACCGACGAATCGAAGCAGAA
CGACCCCCTAGCCGGACTGATCCCCGAAGCCCCCAAGGACAACCCTTTCC
TCAGCCCCTCGCCCACCCACGAAGAAGAAGCAGCAGCGGCAGCCGTTGAC
GCCACGCCACCAGCTTCATCACCTTACCACCAGCCTCAGCCGTACGGGGG
CGGCGGCGGCCCAGGCCCGGAAGCCGCTGCAGCAGCGGGGTACCCGGGCG
TGGCCGCCCCGTCCCCGTACGCAAGACCAGGGCCGCCGGCCCCCGAGCCC
GCTCCGTACGTGGCGCCCGTGGCCCCAGCCCCCTCTCCCTACGCGGCGCC
GGCACCGGCGCCTGCAGCGCCGCGGCCGAGGTACGATCCGTCGACGCGGC
CGAGGACGCCCGTGCCGTCCCCGGCCGGGCCGCGGAGATCGGGCAGCGGC
GGCGGCAGGGTGATGGAGGGCAACATGGCGGACGCGATGGAGCACTGCAA
GTTCGCCTTGCGGGCGCTGGAGAAGAAGGATGTGGACCTCGCGGTGCAGA
AACTGCACGAAGCCCTGCAGCAGCTCACATAG
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