EsuBft546_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_8a-0001
Unique NameEsuBft546_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:283065..285477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft546_8
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length125
Hectar predicted targeting categorymitochondrion
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8aEsuBft546_8aEctocarpus subulatus male Bft15bgeneScaffold_417 283065..285477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8a-0001EsuBft546_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 284319..285263 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8a-0001-exonagat-exon-109181Ectocarpus subulatus male Bft15bexonScaffold_417 283065..283234 +
EsuBft546_8a-0001-exonagat-exon-109180Ectocarpus subulatus male Bft15bexonScaffold_417 284206..284831 +
EsuBft546_8a-0001-exonEsuBft546_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 285018..285477 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8a-0001-exonagat-five_prime_utr-11546Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 283065..283234 +
EsuBft546_8a-0001-exonagat-five_prime_utr-11547Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 284206..284318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8a-0001-cdsEsuBft546_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 284319..284831 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_8a-0001-exonagat-three_prime_utr-18189Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 285264..285477 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_8a-0001 ID=EsuBft546_8a-0001|Name=EsuBft546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1256bp|location=Sequence derived from alignment at Scaffold_417:283065..285477+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCTCTAAATTTGCGCCGTTGGGGGGCACGCAGAGGGGGTGAACCTCCC
CTCTACGAACCCCCGAAACCACTTGGCTTTTGTGTATCCACAAAGCTTCG
GCACACGGAAGCCGATAGCTCGGCCATCAGGAGGTGATCCCAAACAGGAC
TTCGAGGTCGTGTGGATCAGGCAGGAAAAGCATGCCTCGCAAGAACAGCA
ACAGGGTGGCGAACGTAAAGAAGAGGGCTCGTCGTCCCAAGGGGCGGCCG
CCGGAGCGGGCGTGGGCGCAGACATTAGCGCAGATGAAAGCAGCAGCGGC
AGCGGCGGCGCGGAGAAAGTCCCTTCGCACTCGGGGAGGCGAAACGTTTG
TGCGCCTTCGAAACGGCGGCTTCAGTAACAGCTGCGGGCCCATCTGCTTG
TTGCAACATGCGATGAGTGATAGCCTCCCGATTGCTACCATCGAGAGAGC
CACCAATGGCGAGATCGCGTCTGAGGTACGAGGCGCCCTGCGGTACATTC
GCGACATCACCGTCGACACCTCGCACGGCCACACCCTGAGTGTGCTCGAC
CCCGACGAGGAGCGTGAGGTTCACGGGTTCGAAGATCTGGTGGATTCCGC
AGAGCGCGACATCCTTTCGAAGCCGATGTGGGACAAGATCATGCGCTGTC
CGTACGGCTACTTCGATGGCAGGGCGATGATGATCGGGGCGGACGCTTTG
GGTCTAGATGGTCTTCTGATAGTTCGGGTGGACAGCGCTGGATTTTTGGT
GGCGATGGATGGGATGACGACCCCAGTTGCCGAAGCGAAGCATCTCCCAC
TGCCCTCTGGTTTTGGTGGGCTCAAGAAAAGTCAGCCTCAGCTTGAATGC
CACCCCCACACGCCCAATCCTCAAAGCACGTTTCAAAATAGCGAAGGCGT
GCTTGTATGGCGGGCTCGTCACGACCCACTCCGGGCGCCGCCCTTCCTCG
CAGAAGGTATCCACAAATGTGTCCGTCGTGGCATCCATATGACTGTCTGC
GACCAACCTGAGGAGGGTGACAAGGACCAGGAAAAGGCTTGATTTTAATA
ATGGAGAAACGGCACATTGAAGATTTAAATGACAGGATCGTCTGCCAATA
AGGGTGGCTGATGCCCATGCTGTAGACTTTGTGTGTCCTATATATATATA
TATGCTAGTTTTTACGCCAAAAGATAACAAGGCTTCAACAAGACTTCGTA
GTTCCAACAGGCACTTGGAATACAGTGATGGGCACCATGAAGACAAAAAA
AAATAA
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protein sequence of EsuBft546_8a-0001

>EsuBft546_8 ID=EsuBft546_8|Name=EsuBft546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=252bp
MKAAAAAAARRKSLRTRGGETFVRLRNGGFSNSCGPICLLQHAMSDSLPI
ATIERATNGEIASEVRGALRYIRDITVDTSHGHTLSVLDPDEEREVHGFE
DLVDSAERDILSKPMWDKIMRCPYGYFDGRAMMIGADALGLDGLLIVRVD
SAGFLVAMDGMTTPVAEAKHLPLPSGFGGLKKSQPQLECHPHTPNPQSTF
QNSEGVLVWRARHDPLRAPPFLAEGIHKCVRRGIHMTVCDQPEEGDKDQE
KA
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mRNA from alignment at Scaffold_417:283065..285477+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_8a-0001 ID=EsuBft546_8a-0001|Name=EsuBft546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2413bp|location=Sequence derived from alignment at Scaffold_417:283065..285477+ (Ectocarpus subulatus male Bft15b)
TTCCTCTAAATTTGCGCCGTTGGGGGGCACGCAGAGGGGGTGAACCTCCC
CTCTACGAACCCCCGAAACCACTTGGCTTTTGTGTATCCACAAAGCTTCG
GCACACGGAAGCCGATAGCTCGGCCATCAGGAGGTGATCCCAAACAGGAC
TTCGAGGTCGTGTGGATCAGGTATGGAACTAAAGATATGGCCCCTCTCTG
GAACGTGATGCTACTTCTAGCACTAGATCTTGGCATCGCACAGAAAGGTC
CAATATGCAGCACAGGGTACGCAGCGGACAAATAGCGTTTGAATTCGCAT
AGATGCACATGGCGCTACCTCGTGGCCCCGCTCTAGCCCAAAGTCGCCTC
CACCCCTGTGCGAGTGCCGGGGATCATTGGACTAGCCCACGATAAGAACG
TGTGTTAGCGTTAGCACAATACGCACGGTCCACGGCAGCAAAGGCTCCGT
GCTGGGTGTATTGTGTGCAGGAAGCGCCTGTGTGGTACGCCAGCACATGC
ATGACCACGAAGCACATGACACGCAGCACAGAGGGGCACACCCGTTGCGA
CCTAAGAACACCATGCACATGTGATGTCCAGTCGATGCGTAGCGTGCTTG
AGGTCGAGGCCGTGGTCAATTGTTTCGCAGGGGTTGATTATTCTCTCCTG
AACAATTATAAACACGAAATAAAATTACTTCGAAGTAGGTGGACTAGATT
ATTATAGTCTTTATTGTACTCTGTATCCTGCGTACTACTTTTTTTGTGTA
CAGCAGTCGTCTGCTGGGAGATCCTTGAGGGGACAGTTCATCAGCGCGTG
TCCACCCACCCGTACGCGTTGCAGAATATATATTTTTTGAGGTTGATGAG
GGATGATTGCATTTGACCACGTGTCTGATTGCCGGGGAGGCAGGTGCTTG
CGATCAATACTACTGCAGCGGCTGCTGGGACGCTACCCCTCCCCCCTTTT
GCCTGAGCTGATTCTCACGTTCCACGTCGCTATTTTGAGGAAGAAGAGTA
CTAGTCCCGACAGGGCTGTATCAGAGGTAGTTGACACATGGATGACAGTC
GTGACAACTGATCGCGTACTCGGTGCGTACCAAGCTCAAACGTGAGTTGC
AATGCCGTCCCGTCCCGCCTGTTCGCCGGATGGGTGTCTAGGCAGGAAAA
GCATGCCTCGCAAGAACAGCAACAGGGTGGCGAACGTAAAGAAGAGGGCT
CGTCGTCCCAAGGGGCGGCCGCCGGAGCGGGCGTGGGCGCAGACATTAGC
GCAGATGAAAGCAGCAGCGGCAGCGGCGGCGCGGAGAAAGTCCCTTCGCA
CTCGGGGAGGCGAAACGTTTGTGCGCCTTCGAAACGGCGGCTTCAGTAAC
AGCTGCGGGCCCATCTGCTTGTTGCAACATGCGATGAGTGATAGCCTCCC
GATTGCTACCATCGAGAGAGCCACCAATGGCGAGATCGCGTCTGAGGTAC
GAGGCGCCCTGCGGTACATTCGCGACATCACCGTCGACACCTCGCACGGC
CACACCCTGAGTGTGCTCGACCCCGACGAGGAGCGTGAGGTTCACGGGTT
CGAAGATCTGGTGGATTCCGCAGAGCGCGACATCCTTTCGAAGCCGATGT
GGGACAAGATCATGCGCTGTCCGTACGGCTACTTCGATGGCAGGGCGATG
ATGATCGGGGCGGACGCTTTGGGTCTAGATGGTCTTCTGATAGTTCGGGT
GGACAGCGCTGGATTTTTGGTGGCGATGGATGGGATGACGACCCCAGTTG
CCGAAGCGAAGCATCTCGTCCTTTGGGACGGGTACGCTCACTTCGAAGCC
CTTTTTCCTGACGAAGAGGTGTACCCGATGGGTGCATTCTTCGCCCACCC
GTCCTAATCTCCACACAAACCACGCCTCCGTAGAGCTACATTTTCTCCCG
CGGTACACGGCGCGAGGGAGCATTACAATACTGTGCGGGGGGTTATCCTT
CAGCCACTGCCCTCTGGTTTTGGTGGGCTCAAGAAAAGTCAGCCTCAGCT
TGAATGCCACCCCCACACGCCCAATCCTCAAAGCACGTTTCAAAATAGCG
AAGGCGTGCTTGTATGGCGGGCTCGTCACGACCCACTCCGGGCGCCGCCC
TTCCTCGCAGAAGGTATCCACAAATGTGTCCGTCGTGGCATCCATATGAC
TGTCTGCGACCAACCTGAGGAGGGTGACAAGGACCAGGAAAAGGCTTGAT
TTTAATAATGGAGAAACGGCACATTGAAGATTTAAATGACAGGATCGTCT
GCCAATAAGGGTGGCTGATGCCCATGCTGTAGACTTTGTGTGTCCTATAT
ATATATATATGCTAGTTTTTACGCCAAAAGATAACAAGGCTTCAACAAGA
CTTCGTAGTTCCAACAGGCACTTGGAATACAGTGATGGGCACCATGAAGA
CAAAAAAAAATAA
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Coding sequence (CDS) from alignment at Scaffold_417:283065..285477+

>EsuBft546_8a-0001 ID=EsuBft546_8a-0001|Name=EsuBft546_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=759bp|location=Sequence derived from alignment at Scaffold_417:283065..285477+ (Ectocarpus subulatus male Bft15b)
ATGAAAGCAGCAGCGGCAGCGGCGGCGCGGAGAAAGTCCCTTCGCACTCG
GGGAGGCGAAACGTTTGTGCGCCTTCGAAACGGCGGCTTCAGTAACAGCT
GCGGGCCCATCTGCTTGTTGCAACATGCGATGAGTGATAGCCTCCCGATT
GCTACCATCGAGAGAGCCACCAATGGCGAGATCGCGTCTGAGGTACGAGG
CGCCCTGCGGTACATTCGCGACATCACCGTCGACACCTCGCACGGCCACA
CCCTGAGTGTGCTCGACCCCGACGAGGAGCGTGAGGTTCACGGGTTCGAA
GATCTGGTGGATTCCGCAGAGCGCGACATCCTTTCGAAGCCGATGTGGGA
CAAGATCATGCGCTGTCCGTACGGCTACTTCGATGGCAGGGCGATGATGA
TCGGGGCGGACGCTTTGGGTCTAGATGGTCTTCTGATAGTTCGGGTGGAC
AGCGCTGGATTTTTGGTGGCGATGGATGGGATGACGACCCCAGTTGCCGA
AGCGAAGCATCTCCCACTGCCCTCTGGTTTTGGTGGGCTCAAGAAAAGTC
AGCCTCAGCTTGAATGCCACCCCCACACGCCCAATCCTCAAAGCACGTTT
CAAAATAGCGAAGGCGTGCTTGTATGGCGGGCTCGTCACGACCCACTCCG
GGCGCCGCCCTTCCTCGCAGAAGGTATCCACAAATGTGTCCGTCGTGGCA
TCCATATGACTGTCTGCGACCAACCTGAGGAGGGTGACAAGGACCAGGAA
AAGGCTTGA
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