EsuBft546_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_5a-0001
Unique NameEsuBft546_5a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:310817..311380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft546_5
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length56
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5aEsuBft546_5aEctocarpus subulatus male Bft15bgeneScaffold_417 310817..311380 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5a-0001-exonEsuBft546_5a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 310817..311380 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5a-0001-exonagat-three_prime_utr-18186Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 310817..310911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5a-0001-cdsEsuBft546_5a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 310912..311115 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5a-0001-exonagat-five_prime_utr-11544Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 311116..311380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_5a-0001EsuBft546_5Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 310912..311115 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_5a-0001 ID=EsuBft546_5a-0001|Name=EsuBft546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_417:310817..311380- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGTTATATACGACACCGGTGTCGTACTTCCTTATATACGACACCTACCAT
TTCTTGGCCCACAGGACTCCAATCGGCGTACAACAAAATGCGCTGTGTAG
CCACGGCCCGCAGCTATCAGCCCATACCATTTTGGGTCAAATCGGCCAAG
TGGTTGCGGAGAAAGAGCCGAAAATAGGGGGCTCCGCAACTTACCGAGGG
GGTGTCAGCGACGTTCCGGTCATAACTCCTTGCACAGACATTGCCTGATC
GCACGTACACTCGCGATGAGTAGGTACAGGCCAGAGCTATCGTTCAAGCC
GCTGTGGGGCGAAATCCACCCAGTCAGTGCCATGGTACCTTACACCCGGC
GGGACACTGTCCCCGAGGGCGGTGTCGTAGAGAAGCTTATATACGACACC
GCCCGTTTCTTGGCACACACGGCGCCGATGGACACCACACCACGTGCACT
ACATTGTTATGGTCCATAGCTATTGTTCAAGCCGCTGTGAGGCGAAATCC
AATCAGTCAGTGCCATGGTAGGCCTACACCCGCCGGGACGGTATCCCCGA
GGGCGGTGTCGTAG
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protein sequence of EsuBft546_5a-0001

>EsuBft546_5 ID=EsuBft546_5|Name=EsuBft546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=67bp
MSRYRPELSFKPLWGEIHPVSAMVPYTRRDTVPEGGVVEKLIYDTARFLA
HTAPMDTTPRALHCYGP
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mRNA from alignment at Scaffold_417:310817..311380-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_5a-0001 ID=EsuBft546_5a-0001|Name=EsuBft546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=564bp|location=Sequence derived from alignment at Scaffold_417:310817..311380- (Ectocarpus subulatus male Bft15b)
TGTTATATACGACACCGGTGTCGTACTTCCTTATATACGACACCTACCAT
TTCTTGGCCCACAGGACTCCAATCGGCGTACAACAAAATGCGCTGTGTAG
CCACGGCCCGCAGCTATCAGCCCATACCATTTTGGGTCAAATCGGCCAAG
TGGTTGCGGAGAAAGAGCCGAAAATAGGGGGCTCCGCAACTTACCGAGGG
GGTGTCAGCGACGTTCCGGTCATAACTCCTTGCACAGACATTGCCTGATC
GCACGTACACTCGCGATGAGTAGGTACAGGCCAGAGCTATCGTTCAAGCC
GCTGTGGGGCGAAATCCACCCAGTCAGTGCCATGGTACCTTACACCCGGC
GGGACACTGTCCCCGAGGGCGGTGTCGTAGAGAAGCTTATATACGACACC
GCCCGTTTCTTGGCACACACGGCGCCGATGGACACCACACCACGTGCACT
ACATTGTTATGGTCCATAGCTATTGTTCAAGCCGCTGTGAGGCGAAATCC
AATCAGTCAGTGCCATGGTAGGCCTACACCCGCCGGGACGGTATCCCCGA
GGGCGGTGTCGTAG
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Coding sequence (CDS) from alignment at Scaffold_417:310817..311380-

>EsuBft546_5a-0001 ID=EsuBft546_5a-0001|Name=EsuBft546_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=204bp|location=Sequence derived from alignment at Scaffold_417:310817..311380- (Ectocarpus subulatus male Bft15b)
ATGAGTAGGTACAGGCCAGAGCTATCGTTCAAGCCGCTGTGGGGCGAAAT
CCACCCAGTCAGTGCCATGGTACCTTACACCCGGCGGGACACTGTCCCCG
AGGGCGGTGTCGTAGAGAAGCTTATATACGACACCGCCCGTTTCTTGGCA
CACACGGCGCCGATGGACACCACACCACGTGCACTACATTGTTATGGTCC
ATAG
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