EsuBft546_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_4a-0001
Unique NameEsuBft546_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:311516..312678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog67593.Physo139458
ProteomeIdEsuBft546_4
Protein domainsIPR013103
Protein domainsPTHR11439
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation]
Nb exon2
Max annot lvl4776|Peronosporales
Length1097
Hectar predicted targeting categoryother localisation
Evalue4.04e-46
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QH4V@4776|Peronosporales
Date last modified2016-06-15
Date creation2016-06-15
DescriptionGAG-pre-integrase domain
COG categoryL
Cross References
External references for this mRNA
DatabaseAccession
GO0003824
GO0097159
GO1901363
GO0044424
GO0090304
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4aEsuBft546_4aEctocarpus subulatus male Bft15bgeneScaffold_417 311516..312678 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4a-0001-exonEsuBft546_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 311516..312188 +
EsuBft546_4a-0001-exonagat-exon-109158Ectocarpus subulatus male Bft15bexonScaffold_417 312255..312678 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4a-0001-exonagat-five_prime_utr-11543Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 311516..311621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4a-0001-cdsEsuBft546_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 311622..312188 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4a-0001-exonagat-three_prime_utr-18185Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 312501..312678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_4a-0001EsuBft546_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 311622..312500 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_4a-0001 ID=EsuBft546_4a-0001|Name=EsuBft546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1097bp|location=Sequence derived from alignment at Scaffold_417:311516..312678+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CACGGTGCCGCGTGCTCACGCCTACGTCACGACCACTCACGAACACCACG
GGATCTTGGAGGAGACGAATCAAGCGATCAAAATCCCCAACACCTACGAC
GAAGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAA
GGAAATGGACAATCTGCGGAAACACAACGTCTACACTCTGGTGCCCCTCA
GCATCGTTCCCAAGAGAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAG
AAAAAGCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCG
TCAAGAGCCAGGACAGGACTACGGACGCAGCTACGCACCAGTATGCCGTA
TCGGGAGCATTCGCATGACGTGCGCCATTGGCTGCCACAACAACTGGCCC
ATCTACCAACTGGACGTTGTCGGTGCCTTCCTGAACGCCCGCTGTGACAG
AGATGTGTACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGA
CGGGAGAACCCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCG
CAGTCGCCTGCGCTCTGGAATGACACCCTGGACGAATCCCACACGGTGTT
CGGATGGAAAAAGACTCAATCCGACCCCTGCGTGTTCGTGTATATCAGCG
GCAACATCATCGTGATTCTCACGGAGCCCACTGATCGATTCGAGATGACC
GACATGGGAGAGGTAAAGCGGATCCTCGGGATCGACGTGCAGCGAGACTA
CGAGCAAGGAACCCTGGCCATTTCACAGGAGCACTACGTGAACACACTTC
TGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGTGAGCACTCCTGGATAC
GGAGCGGAAATCTCCACGAATCAACCTCAGGACCTAATCCTAGGACCCAC
GGACAAGAAAATCTACTAGTCGATGACAGGAAGCACCCTCTACCTGGCCC
AGTGCGCGCGATTCGACCTCTCCTACGCTGCCCTACAACTTTCCAAGACC
TGAGGCAACCCAGCGCAAGTGAACATGACAGCAGCCAAGCACGTTCTGCG
ATACATTCGGGGTAATCCCGTTCTTCCTATCGTCTACAAGAGAGGAC
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protein sequence of EsuBft546_4a-0001

>EsuBft546_4 ID=EsuBft546_4|Name=EsuBft546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=270bp
MSSPQREEWKGACSKEMDNLRKHNVYTLVPLSIVPKREKILGTKFVFKKK
LDGRFKARLVVGGHRQEPGQDYGRSYAPVCRIGSIRMTCAIGCHNNWPIY
QLDVVGAFLNARCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQS
PALWNDTLDESHTVFGWKKTQSDPCVFVYISGNIIVILTEPTDRFEMTDM
GEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGA
EISTNQPQDLILGPTDKKIY
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mRNA from alignment at Scaffold_417:311516..312678+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_4a-0001 ID=EsuBft546_4a-0001|Name=EsuBft546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1163bp|location=Sequence derived from alignment at Scaffold_417:311516..312678+ (Ectocarpus subulatus male Bft15b)
CACGGTGCCGCGTGCTCACGCCTACGTCACGACCACTCACGAACACCACG
GGATCTTGGAGGAGACGAATCAAGCGATCAAAATCCCCAACACCTACGAC
GAAGCCATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAA
GGAAATGGACAATCTGCGGAAACACAACGTCTACACTCTGGTGCCCCTCA
GCATCGTTCCCAAGAGAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAG
AAAAAGCTGGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCG
TCAAGAGCCAGGACAGGACTACGGACGCAGCTACGCACCAGTATGCCGTA
TCGGGAGCATTCGCATGACGTGCGCCATTGGCTGCCACAACAACTGGCCC
ATCTACCAACTGGACGTTGTCGGTGCCTTCCTGAACGCCCGCTGTGACAG
AGATGTGTACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGA
CGGGAGAACCCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCG
CAGTCGCCTGCGCTCTGGAATGACACCCTGGACGAATCCCACACGGTGTT
CGGATGGAAAAAGACTCAATCCGACCCCTGCGTGTTCGTGTATATCAGCG
GCAACATCATCGTGATTCTCACGGTCTACGTAGACGAAATTCTCATCACA
GGAGGAGGAGACCAGCAGCTCGTGGACCAGAAGAACTAGGAGCCCACTGA
TCGATTCGAGATGACCGACATGGGAGAGGTAAAGCGGATCCTCGGGATCG
ACGTGCAGCGAGACTACGAGCAAGGAACCCTGGCCATTTCACAGGAGCAC
TACGTGAACACACTTCTGGAGCGGTTCGGAATGCAAGAGGCCAACCCAGT
GAGCACTCCTGGATACGGAGCGGAAATCTCCACGAATCAACCTCAGGACC
TAATCCTAGGACCCACGGACAAGAAAATCTACTAGTCGATGACAGGAAGC
ACCCTCTACCTGGCCCAGTGCGCGCGATTCGACCTCTCCTACGCTGCCCT
ACAACTTTCCAAGACCTGAGGCAACCCAGCGCAAGTGAACATGACAGCAG
CCAAGCACGTTCTGCGATACATTCGGGGTAATCCCGTTCTTCCTATCGTC
TACAAGAGAGGAC
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Coding sequence (CDS) from alignment at Scaffold_417:311516..312678+

>EsuBft546_4a-0001 ID=EsuBft546_4a-0001|Name=EsuBft546_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=813bp|location=Sequence derived from alignment at Scaffold_417:311516..312678+ (Ectocarpus subulatus male Bft15b)
ATGAGCTCTCCCCAGCGCGAAGAATGGAAAGGAGCGTGCAGCAAGGAAAT
GGACAATCTGCGGAAACACAACGTCTACACTCTGGTGCCCCTCAGCATCG
TTCCCAAGAGAGAGAAGATCCTCGGAACGAAATTCGTCTTCAAGAAAAAG
CTGGACGGACGCTTCAAAGCTCGCCTGGTAGTCGGAGGACATCGTCAAGA
GCCAGGACAGGACTACGGACGCAGCTACGCACCAGTATGCCGTATCGGGA
GCATTCGCATGACGTGCGCCATTGGCTGCCACAACAACTGGCCCATCTAC
CAACTGGACGTTGTCGGTGCCTTCCTGAACGCCCGCTGTGACAGAGATGT
GTACGTCAGACCCGCCCCCGGTACATCCGCCAAGAACTCCGCGACGGGAG
AACCCATGGTGTACAAACTAGAACGGAGCCTCTACGGCCTATCGCAGTCG
CCTGCGCTCTGGAATGACACCCTGGACGAATCCCACACGGTGTTCGGATG
GAAAAAGACTCAATCCGACCCCTGCGTGTTCGTGTATATCAGCGGCAACA
TCATCGTGATTCTCACGGAGCCCACTGATCGATTCGAGATGACCGACATG
GGAGAGGTAAAGCGGATCCTCGGGATCGACGTGCAGCGAGACTACGAGCA
AGGAACCCTGGCCATTTCACAGGAGCACTACGTGAACACACTTCTGGAGC
GGTTCGGAATGCAAGAGGCCAACCCAGTGAGCACTCCTGGATACGGAGCG
GAAATCTCCACGAATCAACCTCAGGACCTAATCCTAGGACCCACGGACAA
GAAAATCTACTAG
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