EsuBft546_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_2a-0001
Unique NameEsuBft546_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:315048..319524 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft546_2
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length138
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_2aEsuBft546_2aEctocarpus subulatus male Bft15bgeneScaffold_417 315048..319524 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_2a-0001EsuBft546_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 316602..319524 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_2a-0001-exonagat-exon-109155Ectocarpus subulatus male Bft15bexonScaffold_417 315048..315842 -
EsuBft546_2a-0001-exonagat-exon-109156Ectocarpus subulatus male Bft15bexonScaffold_417 316553..316620 -
EsuBft546_2a-0001-exonagat-exon-109157Ectocarpus subulatus male Bft15bexonScaffold_417 318374..318603 -
EsuBft546_2a-0001-exonagat-exon-109154Ectocarpus subulatus male Bft15bexonScaffold_417 318809..318964 -
EsuBft546_2a-0001-exonEsuBft546_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 319390..319524 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_2a-0001-exonagat-three_prime_utr-18182Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 315048..315842 -
EsuBft546_2a-0001-exonagat-three_prime_utr-18183Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 316553..316601 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_2a-0001-cdsEsuBft546_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 316602..316620 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_2a-0001 ID=EsuBft546_2a-0001|Name=EsuBft546_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1384bp|location=Sequence derived from alignment at Scaffold_417:315048..319524- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCGGTCTGCTGGGCGGGAGGAAACCTCTCAAACCTCATCAAGTT
CTTGAAGTTTCTCGAGCTAGCTTCGGCGAACATGCTGGCGGTCACCAACC
TCGCCATCTGCGTCAACCTCGCCCTCGTCGTCATGTCTCATCGGACGCTG
TCTCGTGTCAGCAGCCTCAGCTCGCCCCGGGTGATATGGCTGTCCCTCGT
TCTCGCCGTCGGAGGTGCTGCGGCCGCCGTGCCTTCGTGGAAAACCATCA
TCCTCACGGGTACTTACTTTTCTCCATACAGCGAGGACAAGCAAGACCTT
GACTGGAGCGTCGTCTCCCGCTTCTTGTTCGAGTTCATCGTCGGCATCTG
CATGATCGCCATCGTGGCCTGGCTGCTGCTGTTCCGGATGAAGGAGATCA
AGGAGTGCTGGAAGGTGCACACCCGCATCCGCTACTACTTCGGCCTGACT
CTCATCGCCACCGGAGTTAATCTTGTCCTCGGAATTTTCGGCACCGTGTA
CATCGTCGGAGAAGGCCAGAGGCGGCCTTCGGAGTCTTAGGAGGTTGAGC
AAGCAAAGCTCGAAGCCTCGTGTTCCTGCTACTCGACAGGTGTACGAGGC
CTTCTCCCAACGACTGCGGAAAATGACGGCCACATCGGACTGTTGTCATC
ATTTTCCAAGGCCTGCTGCCCTGTACCTCGCTGCACGTGCAGGTGCCGTC
CATGTTGTGTGACCACCAGATGGATTGTAGGCGGTGGCCTAGTGCTCGGG
GAACCCCGATTACCGACTCTGGCGTTTGGACACAATTGTCGGGAACAGCG
TTCTCCGCTACCCTGCGTGCCTGACTGCCAATGACGTTTTTGATTTCGTT
CGTACGACATCCTCCTTACGCCAGGGCACGGGGGGATCTGAGTCCTTCGG
CGGAACGTCTGGTGAATACCTCTTTTCAGTTTCTTGTGTGGCGTTAGGAT
AGCGTATTTGCGCGTGCTCTTTTTCTTGCATGAGACTCAGAGTGGTCTGT
CTGTTTTGATGCCGACTTTGGAGTTGGAACGATGTGCTCGTCTTGTTTTA
TTCTCCTTACTACCCGACCGCGACCTTGTGGCTGGGTTGGTTGTTGTGTT
GTTTCGTCATCGTCGTCGTCGTCGTTGTTGTTATTGTTTTTGTTGGCGCT
GTTTGGACCAGTTACTACGTATTTTCGCAAGAGTTTTGTTTTAGTCTTTC
TCCAAGACGTTATGTTGCAGCCAAAAGGGACAGATAGAGATGTTGGTTGA
ATCGCACGGTCAAGGGAAGGGTTGGAACTAGGCCACCGAAGCATTGCCCC
CGCGGAACTATTGCCGGGGGTAGTACTAAAGCTACGTCCGGTGCTCAAGA
ACTTCGTTGCGTTGCGATGTATCCCAGGGGAGCA
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protein sequence of EsuBft546_2a-0001

>EsuBft546_2 ID=EsuBft546_2|Name=EsuBft546_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=179bp
MISVCWAGGNLSNLIKFLKFLELASANMLAVTNLAICVNLALVVMSHRTL
SRVSSLSSPRVIWLSLVLAVGGAAAAVPSWKTIILTGTYFSPYSEDKQDL
DWSVVSRFLFEFIVGICMIAIVAWLLLFRMKEIKECWKVHTRIRYYFGLT
LIATGVNLVLGIFGTVYIVGEGQRRPSES
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mRNA from alignment at Scaffold_417:315048..319524-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_2a-0001 ID=EsuBft546_2a-0001|Name=EsuBft546_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4477bp|location=Sequence derived from alignment at Scaffold_417:315048..319524- (Ectocarpus subulatus male Bft15b)
ATGATTTCGGTCTGCTGGGCGGGAGGAAACCTCTCAAACCTCATCAAGTT
CTTGAAGTTTCTCGAGCTAGCTTCGGCGAACATGCTGGCGGTCACCAACC
TCGCCATCTGCGTCAACCTCGCCCTCGTCGTCATGGTCAGTGCACCACTG
CGCGTGCTGAGCGATAACACATGGTTATATTTATAGGTGCTGCAGCAATG
CCTACTTTTAGGTTGACGCAGATGTCTGCTAACCCCAATGATTCTTCCGG
TCGAAGGATGAAATGAGATTGCTATACATGCAAGATTTTCCTGTCATAGA
CCGGTCGGATTAACGCATGACCTCGTTAGTATGTTGCATAGGTCGTGCTT
TCCCCCCCGTGCATGGCTGAATATCTCGCTCAGACACCACCACAACCAAG
CACCCAAGGCTGTCACACCTAGCAGCCGTTGGGGACCTCTGCTCTCATGA
GATTTCCACCGAACTTCTTGCCATGAAGGTGCCCTGTTTTCCGTTATCCC
CGCCCTCCCGCTTTGTCTGTGACCTGATGTCCCTCTTGTGGACCCGCCAC
ATGAATGCAGTCTCATCGGACGCTGTCTCGTGTCAGCAGCCTCAGCTCGC
CCCGGGTGATATGGCTGTCCCTCGTTCTCGCCGTCGGAGGTGCTGCGGCC
GCCGTGCCTTCGTGGAAAACCATCATCCTCACGGGTACTTACTTTTCTCC
ATACAGCGAGGACAAGGTTAGATCCCACTCCATTGACACTATTTACCTAC
TATTTCGCGAACAACATGGTCGTGTCATTTTTCACGTGCAATGCAGAAAT
CCCCTCTGCGTGAGGAATGTTTATGTTTCAGTCTCACGTTTGTGTCTTCT
GTGATTTCGGCTTCTCTAAACCTGTGTCGTTTCAATACTCGTGTGCGTCG
GTGGGTGGTCGGTCGATGTAGCAAGACCTTGACTGGAGCGTCGTCTCCCG
CTTCTTGTTCGAGTTCATCGTCGGCATCTGCATGATCGCCATCGTGGCCT
GGCTGCTGCTGTTCCGGATGAAGGAGATCAAGGAGTGCTGGAAGGTGCAC
ACCCGCATCCGCTACTACTTCGGCCTGACTCTCATCGCCACCGGAGTTAA
TCTTGTCCTCGGAATTTTCGGCACCGTGTACATCGTCGGAGAAGGCCAGA
GGTGAGACAGATAGATCCTTAATTGACACACTAGCCGTAGTCGTTCGTGC
GGGACTTGTTTGAGAATACGACGCAGACTTGACGGCCTTCGCCTAGCTGC
AGCGATGACTTCACGCTGTGTCTATCTGCTGGAACAATGTGGCCAGAAGA
GAAAAACGAAGCACTGGGCGTCTCTTTACCTCCAAGCTGCTGGACAACAT
CACATAGAAGATTGAAGGTTTTGCCAGGGAGATCATGGTTGCGTGGGTGT
GACTCAATCACAACACGATTGCAACATAAAGGTTGCCATATGACAAATCC
AACAACATTACTTAAGTGCGTCTACCAGTCGCTGTGTGCATCGGGGATGT
GATTATGGGTATGGGTGTCGGAGGAAGGCAAACAACACAGTGTGGTGATG
CGTGGACACAGCAAGCTCTTTGCGAAAAAGCACGATGAAAGCATGGGATG
TAGGTTCGGGTGTCTCGTCCAATCAGTGTCGCGAAGCTTACGAACGACTG
AACAGTAGATGCAGGTGCGAGCGTGCGGGTGCAGCGCTCTTGACGAAGTT
GCGGAATAACTCAGCTCCGGCTCGGGCGGGCAGCGGAGTCAATCGTGACG
GAGAAAGCGGTCCCAGTCGGCCCGGCGAAGAAAGAGATTCGATCGGGGTC
CTACTGCGGGGACCCGGAAATCGTCTTGAGTTGAAAGTTGTGGGAAACGC
CCCGCTTTCCGTGAGGCGCCCAGTCCTTGAGATTCAGATTGATCAAAACA
TACCTCTGTATGGCTCCCGTTCGGGAGTTTGGTGACTTACCTCCCGGGGC
GACGCAAGAGGACACGGTCAATGTTACCACGGTTACATCGTTAGTGCCGG
TAGTCCGTACAACCTGTAGAATTCGCGTGACTCGGGGTATTTATCGTTTT
TGTCACATGACTTTCGCGTTGGCGTGAGTGTGTGCTCCTAGGCTACTATA
GGGGCGCCTTCGCCGCAAGTGCTACTGCCTTAAACACTCTTGCGTTTGAT
CGCTCGCTCCTCTGTATCGTAGCGCGTTGCTTATTGTCTTGTGGCAACGT
ATGGGCGTTAAGCGTTGCAAAGAAATCGCAGCTCTTCCTGTTTTTGGCGA
ATACTTGTTTTGGTGGTTTTGAAAAAGGCTTTTTGGTTCGGAATGCCTCC
CCGCGAAATGGGGCTGGTCGGGGTCTCTCTTGGTGTCGATTGCACGTGCC
ACGGATGCCTGGCGGTCCTCGGGCATGCGCGGTGTTGGTAATTTACCGAC
GAGCACCGTGCGTGGCCCTGAGAAGGAGCCACTACATAGAAACGATTCGC
TGCTGCGAGGGGCAGTTGTTCCGAAGCACAAAAAACATCGAAACTGCATG
TATAGATGCACTTGAAAAGCACCAGAGCTAATCCCACCAGTCATGTCAAT
AGACATGTTGCAAGGCTTGTATTGCCCGTTGAAACCCATTGAGCGACTGC
CACATTGTTGAACCGCAAGATGCCTCACCCCCCCCGCGCCGTCCATTGGC
TTGTAACATCGACACGCCCCCCGGCTTCCGTGGGTTCCGCGTTTTGTTGT
GCTGACTTTTGTCTTCCAGGGTTATCCTCATCGTGATATCGTGGTCTTTT
CGTCATATTCATATCGCGCTGGATACCATCGTCCTGTACGGTGTCCTTGG
GGCACCGGCGAGACAAATGGATGAGCGCGGCGGCTCGATTTCCTCTAATC
CCGCCGTCGCTGACTCGGGTCTCCGAAACTGTGGCAACCCTGGGTCAAGT
GCAGGCGGCCTTCGGAGTCTTAGGAGGTTGAGCAAGCAAAGCTCGAAGCC
TCGTGTTCCTGCTACTCGACAGGTACAAGGCCGTCCGGACGACATTATGA
ACACCATCCGTCCGTCGCAGTCCGATTGATTGATTGGTCCCCGAGAGGTC
TCTTGTGACCTGCGAGCAAAAAGCGGACTGTATGTAGGTTTCGGCGGGAG
GTTGAAGGAAGGGTGAAAACTTCAAGTCGTCGTTTGCTTTTTACCGGAGT
GCCACCGTTCGCAGGGCCACAAGCGACTTGTTGTGTTTGTGTCAGATGCC
CTAGGCTCTCTTTGTAGGACGTCGGGCGGCGGCTGCGTATTGATTCTTAC
CACGGACGTATTTGATTCAATCAACGGTGTGGAGAGTTAATTACTGCATT
TACGGGGGCATGTATTGTTCTTGGCGTGAAGGTTTTTGCTTGAGGGAAGT
TTCGAACGTGACCCGCCCGCTGGGTGTTTTGTTTCTGGTGTTTCGTCAGA
CGATCCGTTTGATGCTGGGGGCGTGCATTGTGGGAAACCACGAGGTGGAG
GTAGTGGTTCCGCTGGTGCTTACCCTTTCGGTGACGTCACTGTTGCCACT
AGTAACGGTTGAGGGTGGCTTGTTCATCCCATGGACAGTACTTGATTTGA
CATTGCTCGTGCATCTCACGTCCACGTTCAGCCCTGCTGTAGGCGTGGCC
GAGATGATATGCAAGGAGATTGCGTCGCCACCTGGCCGTGTGGAATGGAC
GCCGAACATGCCTCAACTCGGTATTGTTGCAGGTGTACGAGGCCTTCTCC
CAACGACTGCGGAAAATGACGGCCACATCGGACTGTTGTCATCATTTTCC
AAGGCCTGCTGCCCTGTACCTCGCTGCACGTGCAGGTGCCGTCCATGTTG
TGTGACCACCAGATGGATTGTAGGCGGTGGCCTAGTGCTCGGGGAACCCC
GATTACCGACTCTGGCGTTTGGACACAATTGTCGGGAACAGCGTTCTCCG
CTACCCTGCGTGCCTGACTGCCAATGACGTTTTTGATTTCGTTCGTACGA
CATCCTCCTTACGCCAGGGCACGGGGGGATCTGAGTCCTTCGGCGGAACG
TCTGGTGAATACCTCTTTTCAGTTTCTTGTGTGGCGTTAGGATAGCGTAT
TTGCGCGTGCTCTTTTTCTTGCATGAGACTCAGAGTGGTCTGTCTGTTTT
GATGCCGACTTTGGAGTTGGAACGATGTGCTCGTCTTGTTTTATTCTCCT
TACTACCCGACCGCGACCTTGTGGCTGGGTTGGTTGTTGTGTTGTTTCGT
CATCGTCGTCGTCGTCGTTGTTGTTATTGTTTTTGTTGGCGCTGTTTGGA
CCAGTTACTACGTATTTTCGCAAGAGTTTTGTTTTAGTCTTTCTCCAAGA
CGTTATGTTGCAGCCAAAAGGGACAGATAGAGATGTTGGTTGAATCGCAC
GGTCAAGGGAAGGGTTGGAACTAGGCCACCGAAGCATTGCCCCCGCGGAA
CTATTGCCGGGGGTAGTACTAAAGCTACGTCCGGTGCTCAAGAACTTCGT
TGCGTTGCGATGTATCCCAGGGGAGCA
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Coding sequence (CDS) from alignment at Scaffold_417:315048..319524-

>EsuBft546_2a-0001 ID=EsuBft546_2a-0001|Name=EsuBft546_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=540bp|location=Sequence derived from alignment at Scaffold_417:315048..319524- (Ectocarpus subulatus male Bft15b)
ATGATTTCGGTCTGCTGGGCGGGAGGAAACCTCTCAAACCTCATCAAGTT
CTTGAAGTTTCTCGAGCTAGCTTCGGCGAACATGCTGGCGGTCACCAACC
TCGCCATCTGCGTCAACCTCGCCCTCGTCGTCATGTCTCATCGGACGCTG
TCTCGTGTCAGCAGCCTCAGCTCGCCCCGGGTGATATGGCTGTCCCTCGT
TCTCGCCGTCGGAGGTGCTGCGGCCGCCGTGCCTTCGTGGAAAACCATCA
TCCTCACGGGTACTTACTTTTCTCCATACAGCGAGGACAAGCAAGACCTT
GACTGGAGCGTCGTCTCCCGCTTCTTGTTCGAGTTCATCGTCGGCATCTG
CATGATCGCCATCGTGGCCTGGCTGCTGCTGTTCCGGATGAAGGAGATCA
AGGAGTGCTGGAAGGTGCACACCCGCATCCGCTACTACTTCGGCCTGACT
CTCATCGCCACCGGAGTTAATCTTGTCCTCGGAATTTTCGGCACCGTGTA
CATCGTCGGAGAAGGCCAGAGGCGGCCTTCGGAGTCTTAG
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