EsuBft546_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft546_15a-0001
Unique NameEsuBft546_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:229147..230146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft546_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length95
Hectar predicted targeting categoryother localisation
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15aEsuBft546_15aEctocarpus subulatus male Bft15bgeneScaffold_417 229147..230146 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15a-0001EsuBft546_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 229383..229820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15a-0001-exonagat-exon-109201Ectocarpus subulatus male Bft15bexonScaffold_417 229147..230004 +
EsuBft546_15a-0001-exonEsuBft546_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 230048..230146 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15a-0001-exonagat-five_prime_utr-11541Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 229147..229382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15a-0001-cdsEsuBft546_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 229383..229820 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft546_15a-0001-exonagat-three_prime_utr-18180Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 229821..230004 +
EsuBft546_15a-0001-exonagat-three_prime_utr-18181Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 230048..230146 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft546_15a-0001 ID=EsuBft546_15a-0001|Name=EsuBft546_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=957bp|location=Sequence derived from alignment at Scaffold_417:229147..230146+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TGCGGCGGGTTTAGGGTCAAAAAAATTCGTTTGGGACATCCGGGCCGAGT
CTCCAACGATAGTTGGGCATATATTTCGTATGGGAATCGGGCCCGGATGT
TGCCGACGGATTGTTCGTTTTGATCGAACACATCGAAATCGCGGGGTCAC
ACCGCATCCATCCCGAGCGGCACCCGAGCGTGGCGTGTGTGTGCACGAGC
GTTCCAGCACCCAGCACAGACTGGACCGGGTGCGCGATGGAGAACGCGAG
TGCGGCCGACGACAGCGGCAGCGACGACGAACGACATGCCCACCTACTTG
TTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAGTGGCAACGCGCTGTG
CTTACCGTGGCGACCTGGCGAGTTGTACTGCGGTCCTTCCCAGATGGCGA
CGAGTTGGAGGACGAAGGCCTTGACGGTGGCTCCCCCGTGAAGCGTACCC
GCCGAGTTCTTCCACGGCCAGACTATCGCGCCTCGTTTTGGTGGCGCATG
CTGGGCGAGACGGGCCTCAAGGAACCAGCGTCAAGAGAGGCCAAGCTTTT
TCGGAGGCGCTTCCGCATCCCCTACCAGTTCTTCACCGAGCTCATGGAGC
TGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAAGAGGATGTGGCCGGGC
GCATGTGCATCCCAGTCGAGCTGAAGGTGATGTATTATTGAGACATGCCG
ATTCCAAAACTGGCATGAATGCATCCATCTAGACTATTATGTGCATATTT
GTGTGCACACTGAGAACAAGGACAATGTATGTTCTACACACGCACGTACG
TAGTTGTGAAATACAGAGTGGCGCGACTGGGTGTCGTAGGAGAGCAAGGG
CAACGTAACAGTACAAAGTCGTACCGTAGACCGCAGGGCTTGTGCCAAAG
ATGAGAAAAACGTGGTGTACACCTATAGAAGCTGCTGCAGGTAGATAGTG
GTAAATT
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protein sequence of EsuBft546_15a-0001

>EsuBft546_15 ID=EsuBft546_15|Name=EsuBft546_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MENASAADDSGSDDERHAHLLVLLAAAKRRRREWQRAVLTVATWRVVLRS
FPDGDELEDEGLDGGSPVKRTRRVLPRPDYRASFWWRMLGETGLKEPASR
EAKLFRRRFRIPYQFFTELMELVKKKKWFPMRKRMWPGACASQSS
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mRNA from alignment at Scaffold_417:229147..230146+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft546_15a-0001 ID=EsuBft546_15a-0001|Name=EsuBft546_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1000bp|location=Sequence derived from alignment at Scaffold_417:229147..230146+ (Ectocarpus subulatus male Bft15b)
TGCGGCGGGTTTAGGGTCAAAAAAATTCGTTTGGGACATCCGGGCCGAGT
CTCCAACGATAGTTGGGCATATATTTCGTATGGGAATCGGGCCCGGATGT
TGCCGACGGATTGTTCGTTTTGATCGAACACATCGAAATCGCGGGGTCAC
ACCGCATCCATCCCGAGCGGCACCCGAGCGTGGCGTGTGTGTGCACGAGC
GTTCCAGCACCCAGCACAGACTGGACCGGGTGCGCGATGGAGAACGCGAG
TGCGGCCGACGACAGCGGCAGCGACGACGAACGACATGCCCACCTACTTG
TTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAGTGGCAACGCGCTGTG
CTTACCGTGGCGACCTGGCGAGTTGTACTGCGGTCCTTCCCAGATGGCGA
CGAGTTGGAGGACGAAGGCCTTGACGGTGGCTCCCCCGTGAAGCGTACCC
GCCGAGTTCTTCCACGGCCAGACTATCGCGCCTCGTTTTGGTGGCGCATG
CTGGGCGAGACGGGCCTCAAGGAACCAGCGTCAAGAGAGGCCAAGCTTTT
TCGGAGGCGCTTCCGCATCCCCTACCAGTTCTTCACCGAGCTCATGGAGC
TGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAAGAGGATGTGGCCGGGC
GCATGTGCATCCCAGTCGAGCTGAAGGTGATGTATTATTGAGACATGCCG
ATTCCAAAACTGGCATGAATGCATCCATCTAGACTATTATGTGCATATTT
GTGTGCACACTGAGAACAAGGACAATGTATGTTCTACACACGCACGTACG
TAGTTGTGAAATACAGAGTGGCGCGACTGGGTGTCGTAGGAGAGCAAGGG
CAACGTAAGTATGGGCTACACATGGTCTACATCCATGAACGAAGTGTGCA
GCAGTACAAAGTCGTACCGTAGACCGCAGGGCTTGTGCCAAAGATGAGAA
AAACGTGGTGTACACCTATAGAAGCTGCTGCAGGTAGATAGTGGTAAATT
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Coding sequence (CDS) from alignment at Scaffold_417:229147..230146+

>EsuBft546_15a-0001 ID=EsuBft546_15a-0001|Name=EsuBft546_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_417:229147..230146+ (Ectocarpus subulatus male Bft15b)
ATGGAGAACGCGAGTGCGGCCGACGACAGCGGCAGCGACGACGAACGACA
TGCCCACCTACTTGTTCTTCTTGCAGCAGCGAAGCGGAGACGTCGCGAGT
GGCAACGCGCTGTGCTTACCGTGGCGACCTGGCGAGTTGTACTGCGGTCC
TTCCCAGATGGCGACGAGTTGGAGGACGAAGGCCTTGACGGTGGCTCCCC
CGTGAAGCGTACCCGCCGAGTTCTTCCACGGCCAGACTATCGCGCCTCGT
TTTGGTGGCGCATGCTGGGCGAGACGGGCCTCAAGGAACCAGCGTCAAGA
GAGGCCAAGCTTTTTCGGAGGCGCTTCCGCATCCCCTACCAGTTCTTCAC
CGAGCTCATGGAGCTGGTCAAGAAGAAGAAGTGGTTCCCCATGCGCAAGA
GGATGTGGCCGGGCGCATGTGCATCCCAGTCGAGCTGA
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