EsuBft546_14a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft546_14a-0001
Unique Name	EsuBft546_14a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:233685..236151 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft546_14
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	246
Hectar predicted targeting category	other localisation
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft546_14a	EsuBft546_14a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 233685..236151 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_14a-0001-exon	EsuBft546_14a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 233685..236151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_14a-0001-cds	EsuBft546_14a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 233685..233900 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_14a-0001-exon	agat-three_prime_utr-18179	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 233901..236151 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_14a-0001	EsuBft546_14	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 233685..233900 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:233685..236151+
coding sequence from alignment at Scaffold_417:233685..236151+

spliced messenger RNA

>EsuBft546_14a-0001 ID=EsuBft546_14a-0001|Name=EsuBft546_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2467bp|location=Sequence derived from alignment at Scaffold_417:233685..236151+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCACGCGTTCGACGGGCTGGACGAGCTCGAGACTGTCGAAGAGTG
GGGAGGGAGGGCGGGTCTCCACGATGCTTGGGACAACGACCCTTTGTTGG
ACGAGAGTACTGTGGGGTCCACCAGCCCCACCCCTGCGGACGATGACGGC
ACCACCACGACTCCAGAAGCAGCCCATTTTGTGCAATGGGGGTTGGGGCT
ACATGCAATCCACTAGGACCAGTTTATTTTTGTCTCTCTACACCCCTGGT
TGTGGTTTGTTGTCGCGATTGTTATTTTTTTCTGGTGTTATCCTTGATTG
AAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACCACGAAATGGA
AATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTGGGTTATCCTT
GATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACCACGAA
ATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTGGGTTA
TCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACC
ACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTG
GGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTA
TGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCG
GACTGGGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTG
GCCTATGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTT
TACCGGACTGGGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGT
AGTTGGCCTATGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCAT
CAGTTTACCGGACTGGGTAGGTTATGCAGGCAGGGTGCAGGTTATGGTTA
CAACGTCTTATTTGCAGTGTGTTCTCGGTACGAGGTTGTGTTTTGTCCCC
GTCCACCATTAATGTATGTGGTACGCCGTGATCTAGGTGCAGTACGCCGC
TCTCCCTGTTTGTTCTTTTACGTTCAATGCTTTTTGTAACCGGATCTTTG
TATACCATCTGAGTCGCCTGTTGGTCGACAGCTGAGTGAAGTGGGTGACT
AGAACCGCCGCAAGTGGCATGGCATGGCAACCCCAGCGGTGAATGTAGGA
GGAATAGATCAAAATCGTGAACTTTTAATGTTGTCTGGATGAGTGAAGGG
GTTTGGCACCGCCTACCGAACGATATTGTTCCTACTTATTATTTCCCTCC
TCCGCCTTATGTGTCTGACTGGGACTATCAATTATATTATTCATGTGTTT
AGGTCTATGCCAAGACCTGGGCCGTTTTGGCTTTCTCTTCTGACTATCGA
GTGCATTGTGTGTGCTCAATATCTGGGTAGCTGGTCTGTGACGACGGGAG
ACATCCGCGTGTTTTGGACCGCAAGATGTATGGTGCCAAGCAGAGATAGG
AACGGATGGTGACTATCAAGGCGACACTGGGAACAGTATCCACGCTCGCT
CCTTTCTCTATTTTTTTATGGCGGTACACGACTTTCCACCCGCAGGACGG
CATGTTCAATTGTTGCAAATGTTGATCCAAGAGCGCCGAGTCGATGGCAG
GCAGACCGCGCGAGGTTGCTAAATGTAGAATTCGATTTTCTGTTCACCCT
GACACATGGCACTACCACAGTACTCGCCAGCCGTGCAGCCAGTACCGACT
CCCTGGTTAATTGTAGTGCCCCCGTCAAAATAAAGCAGAGGCGGGGAAAC
GCGACAAGTTGGAGTTCGTCTTCTGTCGGGGGGGATCGACCCCTGATATG
CGAGTTCGCCCCGGGGCGCAAGATTTTAGGTCCCGTCGAGTTGCGGCCCA
TGATGTCCTTCGTGAGCCAAGCTGGTGTATTGGTGAAGTCGTATTCCTCT
ACCAACCAGCGAAGGAATGCCGGCACAGCGAAGCTTTTGTAAACTTTGAC
TGCCTCTGCATTTCTATCAGGCTCGCTGTAGCATTTTGCTGCTCTCCTTG
ACGCTCATGGCAGCGTAAAACCCCCGCGAGAACTGGAACAGACTAGCATG
GCCTACGTTCGGTTTGTCGCCCCAGTTGGTGCCCTTCATCCTGTTGATAA
CCCAATCGGAGCTAGCATTCTTCTCTAGCATAAGAGAGGCGGTTGACATG
GTGGTGCCCGTGCTGTACTTACTTGGCTCTCGCTCTCTACCGTGGGTTGT
GTGGTCTGTGGTGGCCGCTCGGCCGCTCTAGGCCTCAATCCAATCTCGAA
TTTTGACATATCGTGGGCCCCCTGGCGCTACATGCCACAGCAGGATCCTC
GAAAACCAGACGAAATAATCCGTTGGACCATAATATGGCTTCCAACGGAT
TATCCGCCTGGAATTTCGTAACGATTTTTTTTTTCCGTCGGACCAACTTT
CGGGAGCCACAAGAGTC

protein sequence of EsuBft546_14a-0001

>EsuBft546_14 ID=EsuBft546_14|Name=EsuBft546_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=71bp
MLHAFDGLDELETVEEWGGRAGLHDAWDNDPLLDESTVGSTSPTPADDDG
TTTTPEAAHFVQWGLGLHAIH

mRNA from alignment at Scaffold_417:233685..236151+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft546_14a-0001 ID=EsuBft546_14a-0001|Name=EsuBft546_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2467bp|location=Sequence derived from alignment at Scaffold_417:233685..236151+ (Ectocarpus subulatus male Bft15b)
ATGCTGCACGCGTTCGACGGGCTGGACGAGCTCGAGACTGTCGAAGAGTG
GGGAGGGAGGGCGGGTCTCCACGATGCTTGGGACAACGACCCTTTGTTGG
ACGAGAGTACTGTGGGGTCCACCAGCCCCACCCCTGCGGACGATGACGGC
ACCACCACGACTCCAGAAGCAGCCCATTTTGTGCAATGGGGGTTGGGGCT
ACATGCAATCCACTAGGACCAGTTTATTTTTGTCTCTCTACACCCCTGGT
TGTGGTTTGTTGTCGCGATTGTTATTTTTTTCTGGTGTTATCCTTGATTG
AAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACCACGAAATGGA
AATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTGGGTTATCCTT
GATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACCACGAA
ATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTGGGTTA
TCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTATGACC
ACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCGGACTG
GGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTGGCCTA
TGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTTTACCG
GACTGGGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGTAGTTG
GCCTATGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCATCAGTT
TACCGGACTGGGTTATCCTTGATTGAAGCTTGTGTTTACCCTAGTTGGGT
AGTTGGCCTATGACCACGAAATGGAAATGTTTCTATGGAAGGTTTTGCAT
CAGTTTACCGGACTGGGTAGGTTATGCAGGCAGGGTGCAGGTTATGGTTA
CAACGTCTTATTTGCAGTGTGTTCTCGGTACGAGGTTGTGTTTTGTCCCC
GTCCACCATTAATGTATGTGGTACGCCGTGATCTAGGTGCAGTACGCCGC
TCTCCCTGTTTGTTCTTTTACGTTCAATGCTTTTTGTAACCGGATCTTTG
TATACCATCTGAGTCGCCTGTTGGTCGACAGCTGAGTGAAGTGGGTGACT
AGAACCGCCGCAAGTGGCATGGCATGGCAACCCCAGCGGTGAATGTAGGA
GGAATAGATCAAAATCGTGAACTTTTAATGTTGTCTGGATGAGTGAAGGG
GTTTGGCACCGCCTACCGAACGATATTGTTCCTACTTATTATTTCCCTCC
TCCGCCTTATGTGTCTGACTGGGACTATCAATTATATTATTCATGTGTTT
AGGTCTATGCCAAGACCTGGGCCGTTTTGGCTTTCTCTTCTGACTATCGA
GTGCATTGTGTGTGCTCAATATCTGGGTAGCTGGTCTGTGACGACGGGAG
ACATCCGCGTGTTTTGGACCGCAAGATGTATGGTGCCAAGCAGAGATAGG
AACGGATGGTGACTATCAAGGCGACACTGGGAACAGTATCCACGCTCGCT
CCTTTCTCTATTTTTTTATGGCGGTACACGACTTTCCACCCGCAGGACGG
CATGTTCAATTGTTGCAAATGTTGATCCAAGAGCGCCGAGTCGATGGCAG
GCAGACCGCGCGAGGTTGCTAAATGTAGAATTCGATTTTCTGTTCACCCT
GACACATGGCACTACCACAGTACTCGCCAGCCGTGCAGCCAGTACCGACT
CCCTGGTTAATTGTAGTGCCCCCGTCAAAATAAAGCAGAGGCGGGGAAAC
GCGACAAGTTGGAGTTCGTCTTCTGTCGGGGGGGATCGACCCCTGATATG
CGAGTTCGCCCCGGGGCGCAAGATTTTAGGTCCCGTCGAGTTGCGGCCCA
TGATGTCCTTCGTGAGCCAAGCTGGTGTATTGGTGAAGTCGTATTCCTCT
ACCAACCAGCGAAGGAATGCCGGCACAGCGAAGCTTTTGTAAACTTTGAC
TGCCTCTGCATTTCTATCAGGCTCGCTGTAGCATTTTGCTGCTCTCCTTG
ACGCTCATGGCAGCGTAAAACCCCCGCGAGAACTGGAACAGACTAGCATG
GCCTACGTTCGGTTTGTCGCCCCAGTTGGTGCCCTTCATCCTGTTGATAA
CCCAATCGGAGCTAGCATTCTTCTCTAGCATAAGAGAGGCGGTTGACATG
GTGGTGCCCGTGCTGTACTTACTTGGCTCTCGCTCTCTACCGTGGGTTGT
GTGGTCTGTGGTGGCCGCTCGGCCGCTCTAGGCCTCAATCCAATCTCGAA
TTTTGACATATCGTGGGCCCCCTGGCGCTACATGCCACAGCAGGATCCTC
GAAAACCAGACGAAATAATCCGTTGGACCATAATATGGCTTCCAACGGAT
TATCCGCCTGGAATTTCGTAACGATTTTTTTTTTCCGTCGGACCAACTTT
CGGGAGCCACAAGAGTC

Coding sequence (CDS) from alignment at Scaffold_417:233685..236151+

>EsuBft546_14a-0001 ID=EsuBft546_14a-0001|Name=EsuBft546_14a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=216bp|location=Sequence derived from alignment at Scaffold_417:233685..236151+ (Ectocarpus subulatus male Bft15b)
ATGCTGCACGCGTTCGACGGGCTGGACGAGCTCGAGACTGTCGAAGAGTG
GGGAGGGAGGGCGGGTCTCCACGATGCTTGGGACAACGACCCTTTGTTGG
ACGAGAGTACTGTGGGGTCCACCAGCCCCACCCCTGCGGACGATGACGGC
ACCACCACGACTCCAGAAGCAGCCCATTTTGTGCAATGGGGGTTGGGGCT
ACATGCAATCCACTAG