EsuBft546_13a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft546_13a-0001
Unique Name	EsuBft546_13a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_417	contig	Scaffold_417:239406..247408 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft546_13
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	251
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-13_000020.1
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft546_13a	EsuBft546_13a	Ectocarpus subulatus male Bft15b	gene	Scaffold_417 239406..247408 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_13a-0001	EsuBft546_13	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_417 245604..247408 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_13a-0001-exon	EsuBft546_13a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 239406..240200 -
EsuBft546_13a-0001-exon	agat-exon-109200	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 244795..245974 -
EsuBft546_13a-0001-exon	agat-exon-109199	Ectocarpus subulatus male Bft15b	exon	Scaffold_417 246874..247408 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_13a-0001-exon	agat-three_prime_utr-18177	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 239406..240200 -
EsuBft546_13a-0001-exon	agat-three_prime_utr-18178	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_417 244795..245603 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft546_13a-0001-cds	EsuBft546_13a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_417 245604..245974 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_417:239406..247408-
coding sequence from alignment at Scaffold_417:239406..247408-

spliced messenger RNA

>EsuBft546_13a-0001 ID=EsuBft546_13a-0001|Name=EsuBft546_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2510bp|location=Sequence derived from alignment at Scaffold_417:239406..247408- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTCACAGTCTAGGCAGTGCAGGCTAGACAAAAGGGATAGTGGCGG
TCGGAGCAAGCTCCACCGCTGCACGGGAGCCATCATCAACGGGAAGGCGA
CATCCGGCTGCCCGGTGCGTGCGCGGGGTTGCAAGCAAACCGATGGCACC
TGGAAGGTGACGGAGGCGGTCCTGGATCATGTGGCGTGCACCGGCCAGGC
CGGCAACAAAAAGCAGGGGATCAACCGTCGATGTGTGGAGAAGCAAGCAG
CGGCGCTCGTGAGTGCGAACCACAGCATCACCTGTCCCTCACTGGTGAAG
ACGCTGAAGGCAACTTCCGGCGTGGATATCAGCGAGAGGACAGCTGGTAG
GATGCGCGTGGACATCCTGGGGAAGGGAAACGACGCGATCGCCAAGGAGT
ACCAACTCCTACAGAACTACTGCGACCTTCTCGGGAGGGACAACGGCAAC
ATCGTGGAGTGCCGAGTGAGTCGTTTATCGTGTCGTACGTCAGAGTTGGA
ATGTCAGTACCGTTTAGATGACACAGGACATGGAGTGACCGGGACCGCTA
ACCGATCGTTGGAGCTGATCTCGAAGGGGTACTCCCTCGAAACGTTCCGC
GCGGCCGCGAACGATTCGACCTACTGCATCATTCCGCCCGTATGGGACGA
CTTCACGGTCAACCCCCAGCACAGCCCACCGCTGCACGTTCAAGGGACGG
CAGGTCGGCCGAGGAGCGGACCACGCAAGAGAAAGCGCATCCAGTCCAAC
GGCAAGCTGAACACGTCATCGCGAAGTTACGCCATCTACAGCGCTAGCGA
CAGAGCCAACGGCCGTGTTGGGGTCATGCCCACGGGTGGGGGTGCAGCCG
GCGGCGGATCCAGCACAGTTGACCTGTCACAGTGGGCGTCGCAAGGCGCA
CCCTAGATGCAACACGCATCCAGTAGACTGCACGGACGACTGGAGGGCGG
AGGCTTGTTTTCTTGCTGTTGTTTTCAGTGGGCTCGAGTGCAAACGTATG
GTTGCTAGGACAAACTTTTGTTGCGTTGTGTGCCCTTGCCCTGTTAGTGT
GTTGCGCGACACTGTGCTTGGTTCATCACTCTTGCATTCTCGGGATTGCC
GCGTTTTCGCGAGTGCACTGGAATGCAGCAAAGATATTTTCAACGAAAAT
TGCGATATTTTGTTAGTGATACCAACGATTTCTCGTGATTATTTCTAGAC
TAAGCGCATGGCGAAGAGGTTGGCTTGTCATGGTGTGTCGTACACTCATA
AGCTTGTACGGCATCCTCTACACCACCCCTCTCTGTCGTTGTGCGGTCCA
CACAAAAGAGCTGTGGCGACGACCATGGTGTTTGCATTATTAGTGCGTTG
TTGAGCTTGCCAAGTACGGAGGAGTGGGCGTTTTAGCCCTGAACGTGACC
CTGCCCTGCTTGTTTTGAATCAAGTTCCCCGGGTAGATGGCGCCTGAAAG
CATAGTTTGACACGGGTTGACAAGTGTTTCGATATTTTCATCTCTGCTGA
TCAGATCGAACAACATGGATGTCGTGACGGTGCTGCTGTTCCCGAGGATT
CTGTCCCTTCGTACTGGGGATCTGGTGAAATTCGAACATCATTGACGTTG
CTGCTGTCCGAAGTATGCTTCGATACAAATATTTGCCTACTTTTGATGCG
CTGCACGCCTGCTTTCTGGCATTATTCGGAAAAAACAACACCGAGCAACT
AGGTCAGTGCACAAGGACCACATTTGATTCCTCCTGCTGTACCCCTGAAC
TCGTCGTGCTTCGAAGTACTTCGCATGCCTGCAAAGTATGAAACGATGTG
TATGCCAACTGTTATGATTATTCCGGAGTACGCAATGTGCGACCTATTTC
TTCCATAACCCACCATCCATGAAGTAGCAGCGAACGAACGCAGCGTAGCG
AACGGTATCATTTTTGGTCTCTTGATCCGTTAGGTTTTTAGGGGATATCG
AGCCGGAGTTTCGCTTCATATACACCATAGATTGATGTAGTGCATATGAA
CACCTTAATAACATATGGTTACGTGGCAAACTGCCTCGACATGCTGCTGC
TGCCATAGTAAGGCGGTGTGCACTCGTCGTGGTGGTTGGTGTCTTTTGTG
TGTGTGGCGTGTGTGTGTGTGTGTTGCTGCGGTATGCGCGTGTTCTTGTT
CCTGATGCGCGACCCGTTAGTTCTGTTGTCCGTTGCGTGTAACGCATGGT
TTTGTGGCATTTGTCGCTAGTGCGCTGCTTGCTGGGCTTGCCGCGGGCAT
CTTCCCGTGCCTGGTGTCCTCCCGTGCCGACACCGAAGGGGCCTAGCATG
TTTCGGACATATTCCTCCGTGGTCGGTCCGCAGTCGGCAGCCATGGATAG
GAAAGATGCCATGGGTACGGTGTTGGGGGGTTCTGAGACGTTCCGAGGCT
ATTCGCTGTTGTGCCGTGCGGTGACGTGGAGGTCGACTTCCGCTCGATTT
CCGCCGTCCGTACAGTAAGTGGACACAAGTGGGTACAATTTGGACCAAAG
TGGATCAAAA

protein sequence of EsuBft546_13a-0001

>EsuBft546_13 ID=EsuBft546_13|Name=EsuBft546_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=301bp
MISQSRQCRLDKRDSGGRSKLHRCTGAIINGKATSGCPVRARGCKQTDGT
WKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVK
TLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGN
IVECRVSRLSCRTSELECQYRLDDTGHGVTGTANRSLELISKGYSLETFR
AAANDSTYCIIPPVWDDFTVNPQHSPPLHVQGTAGRPRSGPRKRKRIQSN
GKLNTSSRSYAIYSASDRANGRVGVMPTGGGAAGGGSSTVDLSQWASQGA
P

mRNA from alignment at Scaffold_417:239406..247408-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft546_13a-0001 ID=EsuBft546_13a-0001|Name=EsuBft546_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=8003bp|location=Sequence derived from alignment at Scaffold_417:239406..247408- (Ectocarpus subulatus male Bft15b)
ATGATCTCACAGTCTAGGCAGTGCAGGCTAGACAAAAGGGATAGTGGCGG
TCGGAGCAAGCTCCACCGCTGCACGGGAGCCATCATCAACGGGAAGGCGA
CATCCGGCTGCCCGGTGCGTGCGCGGGGTTGCAAGCAAACCGATGGCACC
TGGAAGGTGACGGAGGCGGTCCTGGATCATGTGGCGTGCACCGGCCAGGC
CGGCAACAAAAAGCAGGGGATCAACCGTCGATGTGTGGAGAAGCAAGCAG
CGGCGCTCGTGAGTGCGAACCACAGCATCACCTGTCCCTCACTGGTGAAG
ACGCTGAAGGCAACTTCCGGCGTGGATATCAGCGAGAGGACAGCTGGTAG
GATGCGCGTGGACATCCTGGGGAAGGGAAACGACGCGATCGCCAAGGAGT
ACCAACTCCTACAGAACTACTGCGACCTTCTCGGGAGGGACAACGGCAAC
ATCGTGGAGTGCCGAGTGAGTCGTTTATCGTGTCGTACGTCAGAGTTGGA
ATGTCAGTACCGTTTAGATGACACAGGACATGGAGGTACGCTCGTCAGAG
CGGTGCTATACTGCCGTACTTCTTTTGTTTCCCTGGCATCCTACATAAGA
TGGGGCGCAGTACGCTGCGCTGCTCTGCTGATCCGTCTCGTTCTTGATTT
TTTTCCCGCTCTTTTCGTTGCAAATATATTGCCGCCACCCCTGCATCTCG
CCCGTTGGAATACCGATACCCAACCGATGCATTGACATAGCACGCACCAC
TTCTAGGAATTAGGCGAGTCTTGTTCTGTTTGAATGCAAGCAGCCTTGCC
CTGCACTCGCCGTTGATAGCATCTTACCCTAGCTAGGCCAAACAAATTTT
GAAAACGGGCGACGCAGATGTTGAGAAGTATGGGGAGGGGTACTGCTGTA
AGAGAGCCCACCACCAAACTTGTTATCTTACCCTCTCTCGTGCTCCCTAA
CCCCGTTCCTTCGTGCTTTTTTGAAACAATTAAACAGTGGGACAACGAAG
GTAACTTCAAAAGTCTCTTCGTGCTGCTCGGCGCGGCGGCGCGCCAAGCA
ACTGCCGGCGCTCAGCAGGTAAAATGCGCGCTAGCACGCGCCTCACAAAA
ATAGTGCATGTCCCCGTCCGCGGGTGGTTCTCCGTTGCGTCTTGGCGAAC
ACCTGCTACGATAATAACAGCAAGATTAGTACTTCGTACGACACTCTCAA
CAGGAACGCAGCGAATAACACCAACGAAATACATGTCAAGAGTTGCCCCC
CCTCCCTGCTTCCAGAATTTGAGAAGAGGGGGGTACGCGGGGGTTCCGTC
TCATGCATGCATGCGGTGTGACTGCAGCTACTGCGGTGTGACACACAAAC
GTGTGGCCGTAACTGTGATGTGTGTGGTTGTTCGTGTGTGTGACGAAGGT
CATGTGGTAGAAGCGCCGTCGTCTACAGCAGCAGTGACCGGGACCGCTAA
CCGATCGTTGGAGCTGATCTCGAAGGGGTACTCCCTCGAAACGTTCCGCG
CGGCCGCGAACGATTCGACCTACTGCATCATTCCGCCCGTATGGGACGAC
TTCACGGTCAACCCCCAGCACAGCCCACCGCTGCACGTTCAAGGGACGGC
AGGTCGGCCGAGGAGCGGACCACGCAAGAGAAAGCGCATCCAGTCCAACG
GCAAGCTGAACACGTCATCGCGAAGTTACGCCATCTACAGCGCTAGCGAC
AGAGCCAACGGCCGTGTTGGGGTCATGCCCACGGGTGGGGGTGCAGCCGG
CGGCGGATCCAGCACAGTTGACCTGTCACAGTGGGCGTCGCAAGGCGCAC
CCTAGATGCAACACGCATCCAGTAGACTGCACGGACGACTGGAGGGCGGA
GGCTTGTTTTCTTGCTGTTGTTTTCAGTGGGCTCGAGTGCAAACGTATGG
TTGCTAGGACAAACTTTTGTTGCGTTGTGTGCCCTTGCCCTGTTAGTGTG
TTGCGCGACACTGTGCTTGGTTCATCACTCTTGCATTCTCGGGATTGCCG
CGTTTTCGCGAGTGCACTGGAATGCAGCAAAGATATTTTCAACGAAAATT
GCGATATTTTGTTAGTGATACCAACGATTTCTCGTGATTATTTCTAGACT
AAGCGCATGGCGAAGAGGTTGGCTTGTCATGGTGTGTCGTACACTCATAA
GCTTGTACGGCATCCTCTACACCACCCCTCTCTGTCGTTGTGCGGTCCAC
ACAAAAGAGCTGTGGCGACGACCATGGTGTTTGCATTATTAGTGCGTTGT
TGAGCTTGCCAAGTACGGAGGAGTGGGCGTTTTAGCCCTGAACGTGACCC
TGCCCTGCTTGTTTTGAATCAAGTTCCCCGGGTAGATGGCGCCTGAAAGC
ATAGTTTGACACGGGTTGACAAGTGTTTCGATATTTTCATCTCTGCTGAT
CAGATCGAACAACATGGATGTCGTGACGGTGCTGCTGTTCCCGAGGATTC
TGTCCCTTCGTACTGGGGATCTGGTGAAATTCGAACATCATTGACGTTGC
TGCTGTCCGAAGTATGCTTCGATACAAATATTTGCCTACTTTTGATGCGC
TGCACGCCTGCTTTCTGGCATTATTCGGAAAAAACAACACCGAGCAACTA
GGTCAGTGCACAAGGTATAACCGAACAACCATGTTTCCTAACGAAATCGA
CGGCAATCCCCTGTTCCAAAGAGCCGTGGAAAACAAGTTCCTGGTACACG
AGCGCCAAAAAAGACACATTAATGAGCGTGACGAGAAATACAAAAAAAGT
GCGGAAGACTGATCGTTGCCGATTTCGTATGCATCATGCAAGTACACTCC
TTCGGTACATCATGCGGAAACTACTCGTGTTGGTGAGGACGCGGCTGAAC
CATGACAGCGCAAATGAAATGTCCAAGTTGATGGGTATGGTGCCGCGTTT
TTTACCCCTCCGCGCCCCCCCCCACCCGGTGTTTACCATCGGGGTTGGGT
TTTCATCGCTTGGCAACGACGTTGTAAAACAAGCCCCCCCCTCCCGGCTT
CCCCGGTGTTTTGCCATCCCGGTGTTTTGCCATCGGGGTTGGGTTTTCGT
CGCTTGGCAACGACGTTGTAAAACAAGCCGCCCCCCCCGGTGTTTGCCAT
CGGGATTGGGTTTTCGTCTCTTGGCAAAGACGTTGTAAAACAAGCCAATT
CACTTCGTGAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CCCCCCCCCCCCCCCCCCCCGTCCAACCCCCAACGCTTAGCGGCAGAATC
AGGTCGTCTCTTGGAGGGACAATCACTATGCACCTGAGGCTGCATGTTCA
TTCATTCGCGTGAAGTAGTGTGGTATGCCAATATGGGAATATGCGGCCTG
CAGAATAGGACCACATTTGATTCCTCCTGCTGTACCCCTGAACTCGTCGT
GCTTCGAAGTACTTCGCATGCCTGCAAAGTATGAAACGATGTGTATGCCA
ACTGTTATGATTATTCCGGAGTACGCAATGTGCGACCTATTTCTTCCATA
ACCCACCATCCATGAAGTAGCAGCGAACGAACGCAGCGTAGCGAACGGTA
TCATTTTTGGTCTCTTGATCCGTTAGGTTTTTAGGGGATATCGAGCCGGA
GTTTCGCTTCATATACACCATAGATTGATGTAGTGCATATGAACACCTTA
ATAACATATGGTTACGTGGCAAACTGCCTCGACATGCTGCTGCTGCCATA
GTAAGGCGGTGTGCACTCGTCGTGGTGGTTGGTGTCTTTTGTGTGTGTGG
CGTGTGTGTGTGTGTGTTGCTGCGGTATGCGCGTGTTCTTGTTCCTGATG
CGCGACCCGTTAGTTCTGTTGTCCGTTGCGTGTAACGCATGGTTTTGTGG
CATTTGTCGCTAGTGCGCTGCTTGCTGGGCTTGCCGCGGGCATCTTCCCG
TGCCTGGTGTCCTCCCGTGCCGACACCGAAGGGGCCTAGCATGTTTCGGA
CATATTCCTCCGTGGTCGGTCCGCAGTCGGCAGCCATGGATAGGAAAGAT
GCCATGGGTACGGTGTTGGGGGGTTCTGAGACGTTCCGAGGCTATTCGCT
GTTGTGCCGTGCGGTGACGTGGAGGTCGACTTCCGCTCGATTTCCGCCGT
CCGTACAGTAAGTGGACACAAGTGGGTACAATTTGGACCAAAGTGGATCA
AAA

Coding sequence (CDS) from alignment at Scaffold_417:239406..247408-

>EsuBft546_13a-0001 ID=EsuBft546_13a-0001|Name=EsuBft546_13a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=906bp|location=Sequence derived from alignment at Scaffold_417:239406..247408- (Ectocarpus subulatus male Bft15b)
ATGATCTCACAGTCTAGGCAGTGCAGGCTAGACAAAAGGGATAGTGGCGG
TCGGAGCAAGCTCCACCGCTGCACGGGAGCCATCATCAACGGGAAGGCGA
CATCCGGCTGCCCGGTGCGTGCGCGGGGTTGCAAGCAAACCGATGGCACC
TGGAAGGTGACGGAGGCGGTCCTGGATCATGTGGCGTGCACCGGCCAGGC
CGGCAACAAAAAGCAGGGGATCAACCGTCGATGTGTGGAGAAGCAAGCAG
CGGCGCTCGTGAGTGCGAACCACAGCATCACCTGTCCCTCACTGGTGAAG
ACGCTGAAGGCAACTTCCGGCGTGGATATCAGCGAGAGGACAGCTGGTAG
GATGCGCGTGGACATCCTGGGGAAGGGAAACGACGCGATCGCCAAGGAGT
ACCAACTCCTACAGAACTACTGCGACCTTCTCGGGAGGGACAACGGCAAC
ATCGTGGAGTGCCGAGTGAGTCGTTTATCGTGTCGTACGTCAGAGTTGGA
ATGTCAGTACCGTTTAGATGACACAGGACATGGAGTGACCGGGACCGCTA
ACCGATCGTTGGAGCTGATCTCGAAGGGGTACTCCCTCGAAACGTTCCGC
GCGGCCGCGAACGATTCGACCTACTGCATCATTCCGCCCGTATGGGACGA
CTTCACGGTCAACCCCCAGCACAGCCCACCGCTGCACGTTCAAGGGACGG
CAGGTCGGCCGAGGAGCGGACCACGCAAGAGAAAGCGCATCCAGTCCAAC
GGCAAGCTGAACACGTCATCGCGAAGTTACGCCATCTACAGCGCTAGCGA
CAGAGCCAACGGCCGTGTTGGGGTCATGCCCACGGGTGGGGGTGCAGCCG
GCGGCGGATCCAGCACAGTTGACCTGTCACAGTGGGCGTCGCAAGGCGCA
CCCTAG