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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | EsuBft538_4 |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | TMhelix |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SignalP-TM |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 3 |
| Length | 343 |
| Hectar predicted targeting category | signal peptide |
| Date last modified | 2016-06-13 |
| Date creation | 2016-06-13 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft538_4a-0001 ID=EsuBft538_4a-0001|Name=EsuBft538_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3434bp|location=Sequence derived from alignment at Scaffold_627:338704..344716- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCCCCTCCCCTCTCACTCACTCTCTCCGCTCACCACTACTCGCTCGCC CCTCCCTCCCTAGGTGCCAGCCCTCCGCCCCCAACCATCAACACCATGAA CCCGTCCATGCACAAGTACCAGGCAGTGCTGCTGGCCTGCGCGTTGTTTC TGGCGGCCGTCTGGGTCGGCACGCAGTCGAAGAACAGAAGCAGCAGCAGC ACTACTTTTGCTGGCGCCCACAATCTTCGCAGCACCAAGAGCCACGAGAA GCACCAGGAGGCGCGCGGCGACGGACTGACCATGCCGGCTCACGTGTCAG CCCCCAAGACCAACTCGTTCAGCGCTGTGACTATACCCTCGCCCAGCAAC AGCGAGGAAAAGGCCAACACGAACACGGAGGACTACGTCTGGCCAGGGGA GTTCGCGCTCGAATCCTTGGAGTCTTTGAAGGAAGACCTGTCGTACGACT TCGGCTCGTTCGCGTACGAGCACTAGCCTTCTTCCCGGCCGACACCACAT AATTAACAATGAGCTGAGTCAAGAGGAAGCCTTGGAATCGTCTGGAATCT CTCGGCGTGCGTACCGCCCCGACCGTTGATTGATCCGGTGCGGTTGTCTC CTCGAGCGTCGTCCAATCGTCACTCGCCCACATGGAGGATGTAAACAGTC GCACCCCGTGCCCAGGTTCTGTTGCTGCGTGTTTTTGTCGTGTTGAGTTT TGTAGTTTGTTTCTCTCTCGGGTGGACACGGAAGAGATGGACCGCTTGTG GCCACACTTGAAGAGGAAAATTTCCCCTCTTGGTTGGGCTATATCTTAGT GCCGGCCTTTTGATGAGGTTGCTTCTCTACTTCACTGTCTGTCCCATCTT GTACAGTGTAGGAAACGAGCGTTCCTTGTTTTCTTGAAGGCGTCGAGTTC CTTGTATTTGCGAAGGTGTCGAGTACGACATGATACATGCATGGTCTGAC ATGATGTGGTCTGTCTGCAGAGTAGTACGCCGAGGAGTGCAAGGACGGAC GGAAATATAGCTTTCTCATCCCTTTGGGTAACGGAGCGAGACCTCAGGCA CTGAATCTCTGTCCGTACTTGTGCGACCTATCCGGTCGCGTTCTTGTGTT GCTCGGGACATCATGCTCGTATGCTGATGTCGCGATTGTGTCCAGTCTAA CTGCTTTGCTAAAGACTGCACCCTGTACTTTTCTGTATAGCTTAGTTTTT CATGCTCCTTTGGGGAGTGTGAACGAATGCTCTCAATTTTTCCGACCTTG GAGATTCTGAAAGGGCGGCTGGTTGGTGTACGGGGAGTATTCCTGTCTTC AAGACTCGATTTCGAAGTTGACGTTGTTGCAAACGTGCAGCTAGGACCGG TTGGTTGCCGCTCATCGGGAACGTGGGCGGGTAGAGGGTGGACCGCGTTG TTGGTGCCAACAAACTTGCCGCTGTATGAAACTGGTGAGAGAGGGTGGGT TCACTGGCTCACGTTGGCTGCTCTTTGCTAAAACGTATGGTTGCTGGCTA GCTGTGGGTGCTGCTGAGACGAGAAACGATCGTGGCTCGGTCGCCTCTGT CGCGTGTTGAGATTCCACCCCTGCTGAGCCAAGGTGGTATGTGTTCACTG AGCACATTTTTTTTATTATGTCGTCCAGAGAAGTAGGTTTCGCGAGTTGG GCGGGTACTACATGTGGTTGGACACGCGGCTTGGGAGGAGAAACAAACGT GAAGAGCTTGTTTCATGCTCGGGAGAGTACAACACCAAATCGGCGAACGA ACGTGTTACATATTTTGCTGTGACTTTATGATAGGACGGGGGGCGTTGAA ATTGTCGAGGCGAACGTAGGTACGTATGTATGGCACCATATTTTCACGTC TCGTGACGAGGCGTATTATACTTTTTTCGGTCTTTATTTTTATCGGTTTA TTATTGAAATTCAATGCGTGTTTTTTCTTGTCGGGAACCACAACGACTTT TTTGCATGTCACCACATTCCACTGGGGAAGGTTGTATCTTAATGAAGTAC GTTGTAGTATCGTAATGAAGTAGTACGTTGAGACACGCGTGCGGTTGGCT AATTCAACCTCCACACAGCACGTGTAGCGCGACAATGAAAGGAACGGGTG AACTTGCAATCATTGTGCATGATCTCTTTTGGTTGGTGGTTCATGTGGGC CCGCTCGTGCATCAAGCCTGTTGTTTGCCGATCAATTTATCTACTACATA TGCGTGAGCGACCGCTAGCCCGCGCTGTCGCGAAGGATATAGATCTGTCT ATTATCCATGTCTTGCTTCTTTTCGTTCTGAAAAGGCTTCAGGTTCTGTT GCGACAACCTGACGGTTCACTGGAACAACGCATGGATCTATCCATCTGCT GGCGTCGCCGCAACGGTAAAACATCGATATATTAGTGAAGTACGTTGTAG TAACGTCATGAAGTACGTTTGAGGCCCGCGTGTGGTAGCTGTTTCAACCT CCCCACAGCACGTGTCGCGCGACAATGAAATAAATAGGGTGAACACTATG TAAACTGTGCATTATCTCTTTAAGTTGGTGGTTCATGTGGACTCTTGTAT CAGGTATCGTTTGCCGATCAATTCATCTACTACATATCTATGCGTGAGCG ACCGCTAGCCGGCGCTGTCGCCAAGGACATAGACTAATCTGTTTAGTCTA TCCACGCCTTCCTTTTTGTTCTGAAACGGCTTCAGGTTCTGTTGCGACAA CCTGACGTGCACTGGAACAACGCATGGATCTATCTATCTGCTCGCGTCGC CGCAACCGCAAAACATCGAACTAACTGCAAATGAGTATCTGCTGTAGATT ATCCATGCATCCCTGTGTCTTCTGGTGTTGTTCTGTTTTCGCACATACTC TGGCCCTATGTACAAGCAAGCATCCTCGTCTGTCTCTTATCACGTTCACC GCGAGAAAGGCTCATGAACGCGAATTGAGTCCCGTCTCCGACCAAGAAAT GGAGTCTGTATCCCCTACCTACAGTTGCACAGATGGAAGCAGCCTTAAGT TTTTTATGGTTTTCCCGGTTGAAGGTTTGTTTGTGTGCCCAGCGTGAGAT CAGCCCTGGTGATCTAGCTGATGGACTCCGGCGAGTCCAACCAAAGGGGG AGTTGTTGTTGTTGTTTGTTGTTTGTCTTCACATTAAACCGTATGTCAGT TGCTAAATGCCAAAATCTAGCAAAAGACTCTCAGCCCGTGGTCACGAAAG TGCTAGAGCCATCTGAGGATCTAAAGAACACGCACACATCCGACGAGAAA AAGGTATGCAAGAGCCCGAAGAGGTACACCTAAAAATCCCTGCAGCACCG TATGCGTGCCCAAAAACTGAACTGCACGTCCGTCCCACCGTTCGACTACA GTAGCATCACCCCCTCCCTGTCCCACTCTATACCAAAACGGAAGATTGCC GACTACAGCATAATGCTGTCTGAAGTGCTGTCTG back to topprotein sequence of EsuBft538_4a-0001 >EsuBft538_4 ID=EsuBft538_4|Name=EsuBft538_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MNPSMHKYQAVLLACALFLAAVWVGTQSKNRSSSSTTFAGAHNLRSTKSH EKHQEARGDGLTMPAHVSAPKTNSFSAVTIPSPSNSEEKANTNTEDYVWP GEFALESLESLKEDLSYDFGSFAYEH back to topmRNA from alignment at Scaffold_627:338704..344716- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft538_4a-0001 ID=EsuBft538_4a-0001|Name=EsuBft538_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6013bp|location=Sequence derived from alignment at Scaffold_627:338704..344716- (Ectocarpus subulatus male Bft15b) CCCCCCCTCCCCTCTCACTCACTCTCTCCGCTCACCACTACTCGCTCGCC
CCTCCCTCCCTAGGTGCCAGCCCTCCGCCCCCAACCATCAACACCATGAA
CCCGTCCATGCACAAGTACCAGGCAGTGCTGCTGGCCTGCGCGTTGTTTC
TGGCGGCCGTCTGGGTCGGCACGCAGTCGAAGAACAGAAGCAGCAGCAGC
ACTACTTTTGCTGGCGCCCACAATCTTCGCAGCACCAAGAGCCACGTGAG
TTGATTTCCTTCTCGTTTCATACACATAACGCACAGCACGCACGCACGCG
GCGTTAGCGCGCCTGACGGACAGTTGCTGCTTTCGGCTGTAGATTGATGT
TGGTTTCCGTCGCGTGTGCTGTGCGTGATGGCCGACGAGTGTGCACGTTT
TTGTTGTCATAGCTTGGGCGTCGACGAACTCTGTCAACAACGAACAGCAG
CAGCACCAGCAGCAGATATTGAATCGGAACCCCAACGGCACAAACTAACT
GCGCAGCGGAGCAAGGGGTGGTATGGTTTATGTCCACCTCAATGAAGACG
CCGTCCGACCGCACGGCGGCATGTCTCTGGCGACATTGGTGCCTGGTTTT
GCGATGATGATTACCGGGCATCATCATGGATGGATAGCTGCAGACCACAA
CGAACCATTTTGTCTGCACTGCACATAGAAATCACATCCAACGAACGGTA
GGTGATATGTGGACCGTTACAGCAGTTGTAGTACACCGAAACAGGAGACG
GGGCAACGGGCCGACGCACCCAATAGTCGATGGCCGCTCTGAATTTCACC
GCGGCAAGCAATAGTTATCTCTCTCTCTCGCTCATGCTCGCTCTCGCTCC
CAGGCGGCCTATCCATCTCATTATAATGTGTGAAGTTGGTGTGCCATCGT
TTGTGGCTCGACAGAAAAAACACCCCGAACCATATCCTTCTACCCGGGAA
GCTCCCGATTATCCCGAAATAAGAAATAAATCACTGACCACAACGAACAC
GGAGCCCGCAGCCCTCGTCAGGACGTCAGGACGTGCTATTACTACCGTTG
AGCTCCCCCGGGTGATCCGACTACTGTTTGCTGCTGTAGTCGTTGTGAGC
ACATCAAGAGAGAGAACGAAGCACCTTCTCTTCAAAGAAATTATTACCAG
TCTTTTTTCTCGAATCACAAGTTTTGCGTTTGAGTGCAAGCATCTCAGAA
AAAAAGGGGAAGAAAACAAGCAGAAACTCCTGGTATTGGACACCGACTGG
TGCGTCTACAGCAGGAACTACTGGAGATAGCGAACTACATGTACACTTGC
TGATGCATGTAGGAACAGGCGCAGTCTGGCGCCCAGCATACTGCATCATT
TGTAGGTGGAGCGTAAAAAAAAAAGGAGGCCGCCCCCCCGGTCGGACACA
GCCAGCCATACATAGTTCGTTAATGTGGTCATATGAGGCTTGCTACTTCG
TAGTTTCGTTTGTGGCGTTCCGGCGTACGTGGGGAGCGGGAGGGCATGCC
ATTATTGCTTCAGGTTTTTGGTTGACTCTGGACAGACACAAATCCTAACT
TCGATTGATTGCGGTTCAACGATTGGGTGGGAGTTGGGCATAATGGCTTG
ATGTGTCTCATGGATGGAACGTCCACCAAAAGCGCATCGCCAGGGGGGTG
GCTCTACATGCATGCACACGTGTTTTTGTTTTTTAGGCAACAAATTTTCA
TAAACGCGGGTCGAAATGAATTTGGACTCTGCGAAAATTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTACAATGAATGCGTACGTACCCAAAACTC
GAACTCAGGGTGACCAGATTTACGCACACTGATAACCACGCGCCCTGTCC
GCGTGTTTTTGTGATCCGACCGCTTCATCTTTCGCTGCAGGAGAAGCACC
AGGAGGCGCGCGGCGACGGACTGACCATGCCGGCTCACGTGTCAGGTCAG
CAAGAGGGGGTTGTACTTCACGCCGCTTCGGTGCTTGTTGGTGTTTTCAA
TCGTTTTTTTTGCCGCAGCGTTGCAGGCTCTTCTTATGTTTTGTCTTGAT
CGTCTTAGATGGCGGGCGTTCGAGGTTCATCGTGCAGGATTCGTTGTCCA
CATTGCGACCCCTTCCCCCCCCCCCAAACTGGGGACGGAATCTGATATCT
CGTTGCTTTCTGCCTTGCTTGTTGCTCTCTCTCTCTCCCTCCTGTGACGC
GCAGCCCCCAAGACCAACTCGTTCAGCGCTGTGACTATACCCTCGCCCAG
CAACAGCGAGGAAAAGGCCAACACGAACACGGAGGACTACGTCTGGCCAG
GGGAGTTCGCGCTCGAATCCTTGGAGTCTTTGAAGGAAGACCTGTCGTAC
GACTTCGGCTCGTTCGCGTACGAGCACTAGCCTTCTTCCCGGCCGACACC
ACATAATTAACAATGAGCTGAGTCAAGAGGAAGCCTTGGAATCGTCTGGA
ATCTCTCGGCGTGCGTACCGCCCCGACCGTTGATTGATCCGGTGCGGTTG
TCTCCTCGAGCGTCGTCCAATCGTCACTCGCCCACATGGAGGATGTAAAC
AGTCGCACCCCGTGCCCAGGTTCTGTTGCTGCGTGTTTTTGTCGTGTTGA
GTTTTGTAGTTTGTTTCTCTCTCGGGTGGACACGGAAGAGATGGACCGCT
TGTGGCCACACTTGAAGAGGAAAATTTCCCCTCTTGGTTGGGCTATATCT
TAGTGCCGGCCTTTTGATGAGGTTGCTTCTCTACTTCACTGTCTGTCCCA
TCTTGTACAGTGTAGGAAACGAGCGTTCCTTGTTTTCTTGAAGGCGTCGA
GTTCCTTGTATTTGCGAAGGTGTCGAGTACGACATGATACATGCATGGTC
TGACATGATGTGGTCTGTCTGCAGAGTAGTACGCCGAGGAGTGCAAGGAC
GGACGGAAATATAGCTTTCTCATCCCTTTGGGTAACGGAGCGAGACCTCA
GGCACTGAATCTCTGTCCGTACTTGTGCGACCTATCCGGTCGCGTTCTTG
TGTTGCTCGGGACATCATGCTCGTATGCTGATGTCGCGATTGTGTCCAGT
CTAACTGCTTTGCTAAAGACTGCACCCTGTACTTTTCTGTATAGCTTAGT
TTTTCATGCTCCTTTGGGGAGTGTGAACGAATGCTCTCAATTTTTCCGAC
CTTGGAGATTCTGAAAGGGCGGCTGGTTGGTGTACGGGGAGTATTCCTGT
CTTCAAGACTCGATTTCGAAGTTGACGTTGTTGCAAACGTGCAGCTAGGA
CCGGTTGGTTGCCGCTCATCGGGAACGTGGGCGGGTAGAGGGTGGACCGC
GTTGTTGGTGCCAACAAACTTGCCGCTGTATGAAACTGGTGAGAGAGGGT
GGGTTCACTGGCTCACGTTGGCTGCTCTTTGCTAAAACGTATGGTTGCTG
GCTAGCTGTGGGTGCTGCTGAGACGAGAAACGATCGTGGCTCGGTCGCCT
CTGTCGCGTGTTGAGATTCCACCCCTGCTGAGCCAAGGTGGTATGTGTTC
ACTGAGCACATTTTTTTTATTATGTCGTCCAGAGAAGTAGGTTTCGCGAG
TTGGGCGGGTACTACATGTGGTTGGACACGCGGCTTGGGAGGAGAAACAA
ACGTGAAGAGCTTGTTTCATGCTCGGGAGAGTACAACACCAAATCGGCGA
ACGAACGTGTTACATATTTTGCTGTGACTTTATGATAGGACGGGGGGCGT
TGAAATTGTCGAGGCGAACGTAGGTACGTATGTATGGCACCATATTTTCA
CGTCTCGTGACGAGGCGTATTATACTTTTTTCGGTCTTTATTTTTATCGG
TTTATTATTGAAATTCAATGCGTGTTTTTTCTTGTCGGGAACCACAACGA
CTTTTTTGCATGTCACCACATTCCACTGGGGAAGGTTGTATCTTAATGAA
GTACGTTGTAGTATCGTAATGAAGTAGTACGTTGAGACACGCGTGCGGTT
GGCTAATTCAACCTCCACACAGCACGTGTAGCGCGACAATGAAAGGAACG
GGTGAACTTGCAATCATTGTGCATGATCTCTTTTGGTTGGTGGTTCATGT
GGGCCCGCTCGTGCATCAAGCCTGTTGTTTGCCGATCAATTTATCTACTA
CATATGCGTGAGCGACCGCTAGCCCGCGCTGTCGCGAAGGATATAGATCT
GTCTATTATCCATGTCTTGCTTCTTTTCGTTCTGAAAAGGCTTCAGGTTC
TGTTGCGACAACCTGACGGTTCACTGGAACAACGCATGGATCTATCCATC
TGCTGGCGTCGCCGCAACGGTAAAACATCGATATATTAGTGAAGTACGTT
GTAGTAACGTCATGAAGTACGTTTGAGGCCCGCGTGTGGTAGCTGTTTCA
ACCTCCCCACAGCACGTGTCGCGCGACAATGAAATAAATAGGGTGAACAC
TATGTAAACTGTGCATTATCTCTTTAAGTTGGTGGTTCATGTGGACTCTT
GTATCAGGTATCGTTTGCCGATCAATTCATCTACTACATATCTATGCGTG
AGCGACCGCTAGCCGGCGCTGTCGCCAAGGACATAGACTAATCTGTTTAG
TCTATCCACGCCTTCCTTTTTGTTCTGAAACGGCTTCAGGTTCTGTTGCG
ACAACCTGACGTGCACTGGAACAACGCATGGATCTATCTATCTGCTCGCG
TCGCCGCAACCGCAAAACATCGAACTAACTGCAAATGAGTATCTGCTGTA
GATTATCCATGCATCCCTGTGTCTTCTGGTGTTGTTCTGTTTTCGCACAT
ACTCTGGCCCTATGTACAAGCAAGCATCCTCGTCTGTCTCTTATCACGTT
CACCGCGAGAAAGGCTCATGAACGCGAATTGAGTCCCGTCTCCGACCAAG
AAATGGAGTCTGTATCCCCTACCTACAGTAAGTAGGTGACGTCAATATTG
TCACACCCCCTCTGGACCGATTGCCAAAGCTCTGACCACTCCACAGCACA
CATCACAAGAGAGTGGCGGTGCTCAAAATGACGGCGTTGGAATCCTCTCA
TCGAGGGCTTCCGTTCACGCATCGATTGGTTTGTGGTTTGAATATTAATA
TTCTCTTCCTCGAGGTCTAGCCGACCTCTGAAAATCACCCGAGCAGGCGT
GGCATCTTGTGCCACCCATACTGCTGTACGGTGCTGCTGCTGTAAGCGCA
GACCAAGAACGTGCGCGGTATCAACAGGCAGAGAGAAGATATTATTCAAG
CCGGGGGCTGCCTCCCCACTCACCGGTCTTTCCCCTCTGTCTCTGTCTCT
CACACACGCTGACACTGAGGGCATCCCCGCCTTCCGCCTGTTCAGGTCTC
CGTGACATATCATGCATGCATGTGCAGCGTTGCACGTCTGCGATCCTCTC
GCGTATAATGCATGCTAGCATTCATGCGAAGGACGGATCACTGCGGCTCG
CTCGCGCCGTGTCTTCTTGCGGCCACGAGCCGTTGCTTAAAATCATGATC
GGTTGATGCTTCGATGGATCCAGAGAAAGATCCAGAGAGATCCTTACCGT
TGCTGGCGGTCGCTCTGCAGCTTATGTACACAAGAGTGCGCCTTGCAAGC
AGGTTGCACAGATGGAAGCAGCCTTAAGTTTTTTATGGTTTTCCCGGTTG
AAGGTTTGTTTGTGTGCCCAGCGTGAGATCAGCCCTGGTGATCTAGCTGA
TGGACTCCGGCGAGTCCAACCAAAGGGGGAGTTGTTGTTGTTGTTTGTTG
TTTGTCTTCACATTAAACCGTATGTCAGTTGCTAAATGCCAAAATCTAGC
AAAAGACTCTCAGCCCGTGGTCACGAAAGTGCTAGAGCCATCTGAGGATC
TAAAGAACACGCACACATCCGACGAGAAAAAGGTATGCAAGAGCCCGAAG
AGGTACACCTAAAAATCCCTGCAGCACCGTATGCGTGCCCAAAAACTGAA
CTGCACGTCCGTCCCACCGTTCGACTACAGTAGCATCACCCCCTCCCTGT
CCCACTCTATACCAAAACGGAAGATTGCCGACTACAGCATAATGCTGTCT
GAAGTGCTGTCTG back to topCoding sequence (CDS) from alignment at Scaffold_627:338704..344716- >EsuBft538_4a-0001 ID=EsuBft538_4a-0001|Name=EsuBft538_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_627:338704..344716- (Ectocarpus subulatus male Bft15b) ATGAACCCGTCCATGCACAAGTACCAGGCAGTGCTGCTGGCCTGCGCGTT GTTTCTGGCGGCCGTCTGGGTCGGCACGCAGTCGAAGAACAGAAGCAGCA GCAGCACTACTTTTGCTGGCGCCCACAATCTTCGCAGCACCAAGAGCCAC GAGAAGCACCAGGAGGCGCGCGGCGACGGACTGACCATGCCGGCTCACGT GTCAGCCCCCAAGACCAACTCGTTCAGCGCTGTGACTATACCCTCGCCCA GCAACAGCGAGGAAAAGGCCAACACGAACACGGAGGACTACGTCTGGCCA GGGGAGTTCGCGCTCGAATCCTTGGAGTCTTTGAAGGAAGACCTGTCGTA CGACTTCGGCTCGTTCGCGTACGAGCACTAG back to top
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