EsuBft538_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft538_2a-0001
Unique NameEsuBft538_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_627contigScaffold_627:318053..319474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft538_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length77
Hectar predicted targeting categoryother localisation
Date last modified2016-06-13
Date creation2016-06-13
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft538_2aEsuBft538_2aEctocarpus subulatus male Bft15bgeneScaffold_627 318053..319474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_2a-0001EsuBft538_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_627 318053..319342 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_2a-0001-exonEsuBft538_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_627 318053..318141 -
EsuBft538_2a-0001-exonagat-exon-20326Ectocarpus subulatus male Bft15bexonScaffold_627 318226..318295 -
EsuBft538_2a-0001-exonagat-exon-20324Ectocarpus subulatus male Bft15bexonScaffold_627 318431..318673 -
EsuBft538_2a-0001-exonagat-exon-20325Ectocarpus subulatus male Bft15bexonScaffold_627 318879..319057 -
EsuBft538_2a-0001-exonagat-exon-20327Ectocarpus subulatus male Bft15bexonScaffold_627 319282..319474 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_2a-0001-cdsEsuBft538_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_627 318053..318141 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft538_2a-0001-exonagat-five_prime_utr-11445Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_627 319343..319474 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft538_2a-0001 ID=EsuBft538_2a-0001|Name=EsuBft538_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=774bp|location=Sequence derived from alignment at Scaffold_627:318053..319474- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AAACCCGCGGAGCCGACATCTCACACCCCCTTTACCTGACGACGTGGCAC
GGCTGTTGTGGCACGGCTGTTGTACTCTATTTCGTGAGCAGATCCCCTAG
AAACCTTGTGCACTTAACCTGTCGAAGTATCAATGAAGTTGCTGAAGGAT
GGTTTTGTATTTCCCCATCATGACCCCAGCAACCGGGGGCAACGTATGGA
TATGGACACCGCCACTGTCTCGACACCGGCGCGCCAAAGCTTGGGGACTC
GTCCTGCGGTGACACCGACACAATCGGCCAAGAAGGATGAAGACGAGAGG
CGTAAGCGCCGAACCTCCGGACCGCGCGCGGTCGGCACAGACGCTCAGCA
GGCCACACACGACTCCACGAAGGGGAATGGGCCGAACTACCCTTGCGGGT
TTAAACCAGGTAGGGAGGGAAGCGACGGGGCGAAGCTGCCTGTGTACATG
TTCCTCCAGCAAGGCGCCCTGGAGGAGGGCGTGCAAGAACACACCACCGC
TGAAGTGCACGCTCATGTTGCCCGGTGGTGGTCTAGCTACGCGGACAGCA
ACGAGGACCGCGCTTTTACTGGGAACCGCACCTCGACCGGCAAAATCTTG
GCTTCGGTGGTCAAGGCCGATTTATACATCCCGCGCCAGGACGAGGACCT
CGCCTTCTACTACGGACTCAAGAAAAGCTTCTCTGGATGGGCGGAGGAGT
ACAGTGCTGACGGCTCATGGAAGTTCAAGACTAGCAAGGGTGGAACGCCC
GTCTCGGTGAGCCTATCCTGGTGA
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protein sequence of EsuBft538_2a-0001

>EsuBft538_2 ID=EsuBft538_2|Name=EsuBft538_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=213bp
MKLLKDGFVFPHHDPSNRGQRMDMDTATVSTPARQSLGTRPAVTPTQSAK
KDEDERRKRRTSGPRAVGTDAQQATHDSTKGNGPNYPCGFKPGREGSDGA
KLPVYMFLQQGALEEGVQEHTTAEVHAHVARWWSSYADSNEDRAFTGNRT
STGKILASVVKADLYIPRQDEDLAFYYGLKKSFSGWAEEYSADGSWKFKT
SKGGTPVSVSLSW
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mRNA from alignment at Scaffold_627:318053..319474-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft538_2a-0001 ID=EsuBft538_2a-0001|Name=EsuBft538_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1422bp|location=Sequence derived from alignment at Scaffold_627:318053..319474- (Ectocarpus subulatus male Bft15b)
AAACCCGCGGAGCCGACATCTCACACCCCCTTTACCTGACGACGTGGCAC
GGCTGTTGTGGCACGGCTGTTGTACTCTATTTCGTGAGCAGATCCCCTAG
AAACCTTGTGCACTTAACCTGTCGAAGTATCAATGAAGTTGCTGAAGGAT
GGTTTTGTATTTCCCCATCATGACCCCAGCAACCGGGGGCAACGTATAGT
CCACAAAAGCACAATTTTGCAAAGATGGGTTGGATACCGTCGTTGTCGCA
CACAGCCTTGGAGGCTGTTAAAAAATCATGTCCGCGCTCTTTTGCGGAGG
CGCTGGTGGCAACGTAGTTTCACTTTACTGCTGTGTTGTCTACGTCCATG
TGTCACTTTGCATTTGCGCCTACGCCCTGACTTTTATTCGGTTTCTCGGT
TCCCGTGTGCCCGCCAGGTATGGATATGGACACCGCCACTGTCTCGACAC
CGGCGCGCCAAAGCTTGGGGACTCGTCCTGCGGTGACACCGACACAATCG
GCCAAGAAGGATGAAGACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCG
CGCGGTCGGCACAGACGCTCAGCAGGCCACACACGACTCCACGAAGGTGC
GCCAATCGACTCATTTGTTTTGGGCAGTACTGAGGCCGTACGAGGTTGAC
GGCACTCTGTTTGGTTTGATATGCGCGGTTTGAAGTCGATGATCGTCCTC
TTTTATTTTCGCGGCAGCGGCCCCAAGATAACGCGCATATACGAAGATGA
TCGTTGGCTACTGTCTAAATATGCATGTTAATGCATGTTTATTCTTTGCA
GGGGAATGGGCCGAACTACCCTTGCGGGTTTAAACCAGGTAGGGAGGGAA
GCGACGGGGCGAAGCTGCCTGTGTACATGTTCCTCCAGCAAGGCGCCCTG
GAGGAGGGCGTGCAAGAACACACCACCGCTGAAGTGCACGCTCATGTTGC
CCGGTGGTGGTCTAGCTACGCGGACAGCAACGAGGACCGCGCTTTTACTG
GGAACCGCACCTCGACCGGCAAAATCTTGGCTTCGGTGGTCAAGGTAGGT
GTTGGTCAGGAGTGGTCATCGTATACGCGCTATTAAATGGACGTGTTTAT
CCAAGTACCCGTATCTTGCAACCTTGCTGACCCTCCTATGTGTCGGCGTT
ATTTTCATAGTGACTCTCGCGGTTTGTAGGCCGATTTATACATCCCGCGC
CAGGACGAGGACCTCGCCTTCTACTACGGACTCAAGAAAAGCTTCTCTGG
TAGGTCCACGACGTGGGTGCTGACGAGGTCGTCATTGGCACGAGAGCGAG
CCGATGCGCAGTGGAGTTTTTGTCTGCCGGCAGGATGGGCGGAGGAGTAC
AGTGCTGACGGCTCATGGAAGTTCAAGACTAGCAAGGGTGGAACGCCCGT
CTCGGTGAGCCTATCCTGGTGA
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Coding sequence (CDS) from alignment at Scaffold_627:318053..319474-

>EsuBft538_2a-0001 ID=EsuBft538_2a-0001|Name=EsuBft538_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=642bp|location=Sequence derived from alignment at Scaffold_627:318053..319474- (Ectocarpus subulatus male Bft15b)
ATGAAGTTGCTGAAGGATGGTTTTGTATTTCCCCATCATGACCCCAGCAA
CCGGGGGCAACGTATGGATATGGACACCGCCACTGTCTCGACACCGGCGC
GCCAAAGCTTGGGGACTCGTCCTGCGGTGACACCGACACAATCGGCCAAG
AAGGATGAAGACGAGAGGCGTAAGCGCCGAACCTCCGGACCGCGCGCGGT
CGGCACAGACGCTCAGCAGGCCACACACGACTCCACGAAGGGGAATGGGC
CGAACTACCCTTGCGGGTTTAAACCAGGTAGGGAGGGAAGCGACGGGGCG
AAGCTGCCTGTGTACATGTTCCTCCAGCAAGGCGCCCTGGAGGAGGGCGT
GCAAGAACACACCACCGCTGAAGTGCACGCTCATGTTGCCCGGTGGTGGT
CTAGCTACGCGGACAGCAACGAGGACCGCGCTTTTACTGGGAACCGCACC
TCGACCGGCAAAATCTTGGCTTCGGTGGTCAAGGCCGATTTATACATCCC
GCGCCAGGACGAGGACCTCGCCTTCTACTACGGACTCAAGAAAAGCTTCT
CTGGATGGGCGGAGGAGTACAGTGCTGACGGCTCATGGAAGTTCAAGACT
AGCAAGGGTGGAACGCCCGTCTCGGTGAGCCTATCCTGGTGA
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