EsuBft538_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft538_10a-0001
Unique Name	EsuBft538_10a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_627	contig	Scaffold_627:422307..430183 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft538_10
Protein domains	IPR001008
Owner	apollo_admin@sb-roscoff.fr
Nb exon	3
Length	171
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Metallothionein
Ec32 ortholog	Ec-20_001230.1
Date last modified	2016-06-13
Date creation	2016-06-13

Cross References

External references for this mRNA


Database	Accession
GO	0046872

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a	EsuBft538_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_627 422307..430183 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a-0001	EsuBft538_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_627 422396..428770 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a-0001-exon	agat-exon-20390	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 422307..422438 +
EsuBft538_10a-0001-exon	EsuBft538_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 424072..424165 +
EsuBft538_10a-0001-exon	agat-exon-20389	Ectocarpus subulatus male Bft15b	exon	Scaffold_627 428695..430183 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a-0001-exon	agat-five_prime_utr-11444	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_627 422307..422395 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a-0001-cds	EsuBft538_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_627 422396..422438 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft538_10a-0001-exon	agat-three_prime_utr-18012	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_627 428771..430183 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_627:422307..430183+
coding sequence from alignment at Scaffold_627:422307..430183+

spliced messenger RNA

>EsuBft538_10a-0001 ID=EsuBft538_10a-0001|Name=EsuBft538_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1715bp|location=Sequence derived from alignment at Scaffold_627:422307..430183+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCGTATTGCGTATTGTCAGAATACGCGCACAAACACTGCCCAAGAATCTC
ACTTTAGTAAAAGCAAACAGCAGTTACAATCCAAACAACATGTCGAGCGG
AGGATGCAAGGTCTGGGCCGACTGCAGCTGTGGGTCATCGTGCTCTTGCG
GTGACGCGTGCACGTGCGGATCCGTGAAGCAGACCAAGACTGCGACTTCT
CGCAGCGCCGGCGACTGCCCCTGCGGGGACAACTGCAAGTGCGGATCCTC
GTGCAAGTGCACCTCGGGAGGAACCTGCGACTGCGGCTGCGGCTGCAAGT
AGTAACCGCGATGATTTCCCGAACGGACGGGGGCTTCACTTCGAACAGCA
GCTCCCAACGTCCGGGCTCGTTGTAGGAAGAAAAATGTACGCTCGGGGTC
TGACCCTTCAACGCTGTCTCTCCTATGCTGCTGGTGCTTGGCATGGAAGA
GAAGTTGGCGGCGATTGATCGAGCTACGTGTTGGATGCTATCGTGGGCGG
ATGTCTTATTTGTCCTGGAAAAAATGAAGAGTCCTGTAGACAATAGAAGT
AGGTGGTAGAAGGGGCTGAGGGGGTGCGGCAGTCGGACCCGTGGCCTTAT
CATACACCGAATGGGTATTTCGGGGGGTGGAAACGCACGACGAAACGAGA
CTATTGGCTATGTCTTTCGATGTAGTTGCACGAGGGATCCGCTTGTGTGG
ATTCGCTTCGGTCATTCGTCGCGCGCTAGTGCGTGTGGTTTGTGTAGGGG
AGGGGGGGGCATTCCAATGCGTCCATATCCGCGTGCGGGGACTGGGGATC
GGGGCTCAACATGTTTGTCAAATGCACCCCCTGTGCACAGCACCGTTATA
TGTGAACACAGGAAGGACTTGTACCGTTTTGGGTGTGATGGACGTTTGGC
AAGGGGAAGGAGGACAAGGCCATTTGATCGATATCAAAAATAAAGAGCGG
GGTATATGAGAGCAATCAATGGGGTAGGGTGAGCAAAGGCCTGTTCAAAC
CCTTGCGGTCCTGCCCTTTGCTCAAAGTGTCTTGCGTTGTGCGCACCTAA
GTATTCAACAACGCTCTTCAGTTCGATTCTCTCTTGTCTGTGAACAATAA
CATGTTGTGACGTTTGCGGTGGAAAACGATCTTCTTGCTAATCGTGGGAA
CGAGCTGCTTCGGTTGAAGTCTCGTTCTGCATGAGGTGATGGAGTTGGCT
CACGGACGAAGACCCCGGTCGGCAGAGCGACCAAACACAACGAAGGGGGA
AAGACCGCGAACGTCGTTAATTTTGAACACGATTGATGAAAGCCGACCAT
GGAATGCAGCAGTGTGCACGAACGGTGGCACGTAGTTCGCGTTCGTCTCG
CCTATTATGGTGCCACTATTCACCTTTCGGTGCATGTGTTTAACGTACCA
GGCGTGTTCAAACACCAAATCCCTTCGCAGCAGTGTTTTCTTATTCGTGT
CCATGGGTTCCAACAGCAAACCACATCTTGGTTGACCTTTCTTTTATTGC
CCTACCCTGCCTCTTGCGGTGGCGTTATTATCGCGGATGTGTTAGCAACT
TTCCCTTAGCATCGTCGACGTAAACAGAATTCATGTGCTCGGCATTTTGG
CTTCACGATCACTATTACTGTATAGTAGTAGTCGATACCGTTGACCTTCC
CCATCGTCCTCGGCCAATGGGAGAAACACGTCAATCAAGGTGCCATGAAC
CAACACGAGTAGGGT

protein sequence of EsuBft538_10a-0001

>EsuBft538_10 ID=EsuBft538_10|Name=EsuBft538_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=70bp
MSSGGCKVWADCSCGSSCSCGDACTCGSVKQTKTATSRSAGDCPCGDNCK
CGSSCKCTSGGTCDCGCGCK

mRNA from alignment at Scaffold_627:422307..430183+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft538_10a-0001 ID=EsuBft538_10a-0001|Name=EsuBft538_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=7877bp|location=Sequence derived from alignment at Scaffold_627:422307..430183+ (Ectocarpus subulatus male Bft15b)
TCGTATTGCGTATTGTCAGAATACGCGCACAAACACTGCCCAAGAATCTC
ACTTTAGTAAAAGCAAACAGCAGTTACAATCCAAACAACATGTCGAGCGG
AGGATGCAAGGTCTGGGCCGACTGCAGCTGTGGTGAGGTTTGACAGGAGT
ACGGGGGGGGCGGGGGATATCTTGGGTGTGATTTGATTCTTTGCTGATGG
TCAACAAAAAAAAGCGTCGTGTTGCTCAAGTGCACCCTTCAGCCGGCGAA
ACTACGCATTGTGGCATCGACGGCGTGTGGCGGCGGCCAACTGGTGCACG
CCGTTTGATGACGTATGGGTGGGGACCATGGGGACATTTTCGTTGCGCCA
GAGACGCGCGGGGGGAGTTTTTTTTGGACGAGCCGGTGCGAATACGTATG
GAGCAGACGCCGAGATCCAAACCTGTTCAACAATCTGTTGAAGTTTGCCT
CGTGACGTGGTACTCGGAGGCGTCGGAGCGCGTGTACATCCCGGCCCACC
TTTTTTTTAACTTCCGCCTTTCGCAACCATCCGTGCAGATCGGCGGTACC
CCTGATGTGTACCCTGTGAGCCAGGCCTGTGCGAAGGCTGATACCTAACT
AGCGGCCTCCTCCCGTCTGTCCCGATTGCTGACCCTCCCCCGATTGTGTA
CCACCAACAACTCGGTTGATGGAAGCTTTTGCTTTTCAGCCGTTCCCTCG
ATTTGAGGCGGAGTTCGCCCTTGTGGAAATACTCCGCTATTTAGCCGTGG
CGTGTTTTGTTTGTTTATTTTTCTCCCATCATTGGACTCTGTCGTCAGCC
CCTCTGGCCCCTATCCTCCACTTCTACCAACTCGACGACCCAACCGGGGT
CACATAGGAGGGGGGGGGCGGGGCCCCCTCCTGCGGTTCGTGCCTGAGGT
ATTTTTATCGCGAGAAGGGTACAGCAATCCCTTCCCTCGCGACTTACGAA
GTCGATCATGGTTTACTAACAATCGAGCTTCGCAGCGCGTCGCTTTCATC
CTAGATCAGGATTTATCGCGTTTGTGTTGAACGGGAGGTAATTGTGAGCA
TGATATCTAGTATTATTGAAGAGATTTTGTTTGTCAAATCCGGACTCGGG
GACAGCGGGCTTGCTGAAAATGGTGTGTGATCGTTTTCCTCTGATACTTT
TTTGTATGTTAGCCCCGATGCGTAATGTTTTGCTCGAACGATGTGTAGAC
CATTCGGCATCAAGTACATACTGCCCTAGCTTCTTCTTCATGTAACCGCC
GAAATGCGGGATTCAAAGACGGGGTTCGTTTCGATGGGCACCTCCGTCAC
AGACTCCCCGGCTCTCTGTCTTCCAAACGTCCCGCACTGACTTTTCTTTA
TTTTCTTAATATCACACAACAAATCCATCTCTATCTATAGAAATAAGTCT
AAGATAGATTGGCAATGAATCCATAGCGTGAGCGAAATGCTACCTGTATG
TCTACGGTTTCCCAGACAGCATACAACGATATCTCCCCTGTGGGTAACAT
GCTCAACAAGGCAGTTTGGTAGCCATCTTGTGTATTTATGTGTATGTTAA
CTTGGTAAGTTGTAGACGGAAGATTTAGCGGAACTCGGTTTGTACCGTAC
GCTTAGGGGAACGCCAAGCGGGACCTGGTGTCAAAAAGCCAGTGAATGGT
CCCCTGAGTGGCATCGTCGTTTCGACTTTCGTGCGCCAACCGCTGATTTC
TTGTGCCCTGGACTTGCTGCTGCCGCTCCTTTTGCTGCTTGGGTCTCCTC
TCTCATCATGACCAGGGTCATCGTGCTCTTGCGGTGACGCGTGCACGTGC
GGATCCGTGAAGCAGACCAAGACTGCGACTTCTCGCAGCGCCGGCGACTG
CCCCTGCGGGTAAGCGCGGTGAAGTTTGTGGGGTGGCACCGCAGGACTGT
GTGTGTGTGTGTTTAAAGTCGTAGCCGTTAGACCTTTGACCTCGCATCCC
TACAAAGCCGGGTTCTTACCGGACCAGGCTCTCACATCAGCAAGCGCGAA
GCACCGTGAGATATTCGGCGAGTCACATGGTCGCCCCCTCACGAAATTAA
TCCTGGTCTAGGATGAAAGCGACGTGTTGCAAAGCTCGTTGTTAGTAAAC
CATAATCGACTTCGTAAGTCGAGAGGGAGGGGATTGCTGTACCCTTCTCG
CGCGATGAAAATACCTCAGGCAGGAACCGCAGGACGGGGTCCAGCCCCCC
CCTCCTATGTGACCCCGGTTGGGTCGTCTAGCTAGTAGAAGTGGAGGATA
GGGGCCAGAGGGGCAGACGGCAGAATCCGATGATGGGAGACAAAAAAATA
ATGGTCGCCCCGGTGGTCTGGTGGGTAACCTCGCAGCCTGCCAAAGGCCA
GGTCATGGGTTCGAGCCCCGACAGAGTGAGTTTTTTCTCTCTAAATAAAT
CCTGGTCCAGGATGAAATCGACGCGCTGCAAAGCTCTTTGTTAGTAAACC
ATAATCGACTTCGTAAGTCGCGAGGGAAGGGATTGCTGTACCCTTCTCGC
GATAAAAATATCTCAGGCAGGAACCGCAGGAGGGGGTCCAGCCCCCCCCT
CCTATGTGACCCCGGTTGGGTCGTCTAGGTAGTAGAAGTGGAGGATAGGA
GCCAGAGGGGCAGACGACAGAGTCCAATGATGGGAGAACGTAGTTTTTTT
TGTTTTTTTCTCCCATCATTGGACTCTGTCGTCTGCCCCTCTGGCCCCTA
TCCTCCACTTATACTAGCTAGACGACCCAACCGGGGTATTGCCTGGTGCT
GGTACGTTACCCTTTGATGTTTTCTTTAGGCGGGTGTAGGAAGCGTCCTC
CTTTACCTGTGTTTTTGTGTAGTTTTGATCGGTTTCCGAGGGCTCTTTTC
TCGAACGGTCGGTGCGGTACCTGTTATTTCAATTTGATCGTTATGTATTG
TGTTTCCGAGTGGTTTGTACCCTATTTTTGTCTTGTTTCCCCGCGGCGTC
GTATGTGCCGGGTTTTGATACCACGGGCTCCCTATGTGTTGTGGACTACA
ACAACAATGAAGGGTGCGCTGCATCCTGCGAAGGGTGTTCGGCATGTTAT
GCGTACTTGTTGCGTACGGATGACAGCTGCCTATCAGGCTGAGGAGGGGG
GGGGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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GGCAACCTCTCCTCTCCCATCCCGCACATGCGATACTGCCAGGTCAGCTT
CCTCGCGTCTCTTCCCGACCGTAGGGATTGGATCCCCAATTCTGCCCTCA
CGGCTGCATTACTTGTGCGCGTGGAGCATCCTAGGATGATTTTCGCTGCT
TTCATCTGCGCCGCCTCGAGTTCTTTCACTACCTTCTTATTTCCTTCCCA
TACTTCTCCGGCGTACTCTAGCGGCGGTACGATTACGCTCTTCAAAACCG
TCAATTTGATGCGTGTATCGAGGTGCCGGTTTGCGAGTATTTGGGCGGCT
TGTTTTACAACGTCGTTGCCAAGCGACGAAAACCCAACCCCGATGGCAAA
TACCACCGAGGGGGGGGGGCAATCGTATATAGCGCCTGATGAAAATGCGG
GAAAGCAGCCGGCGCTTGGGAGTGTAAATTTATTTTGGTGTGCAATGCCC
GTAGAGCTCGCAACGTTGCAACATGTGCAGGATGGCTAGATCGCTGTGTC
CGTCTCGCAACCTGCCGCCCCATCCCCGGATTCGTTTTTCTTGCTGCTAC
GTGGTGGCTGGCCCTTCCGTGGTCGTTTGACGCTGCAGGGACAACTGCAA
GTGCGGATCCTCGTGCAAGTGCACCTCGGGAGGAACCTGCGACTGCGGCT
GCGGCTGCAAGTAGTAACCGCGATGATTTCCCGAACGGACGGGGGCTTCA
CTTCGAACAGCAGCTCCCAACGTCCGGGCTCGTTGTAGGAAGAAAAATGT
ACGCTCGGGGTCTGACCCTTCAACGCTGTCTCTCCTATGCTGCTGGTGCT
TGGCATGGAAGAGAAGTTGGCGGCGATTGATCGAGCTACGTGTTGGATGC
TATCGTGGGCGGATGTCTTATTTGTCCTGGAAAAAATGAAGAGTCCTGTA
GACAATAGAAGTAGGTGGTAGAAGGGGCTGAGGGGGTGCGGCAGTCGGAC
CCGTGGCCTTATCATACACCGAATGGGTATTTCGGGGGGTGGAAACGCAC
GACGAAACGAGACTATTGGCTATGTCTTTCGATGTAGTTGCACGAGGGAT
CCGCTTGTGTGGATTCGCTTCGGTCATTCGTCGCGCGCTAGTGCGTGTGG
TTTGTGTAGGGGAGGGGGGGGCATTCCAATGCGTCCATATCCGCGTGCGG
GGACTGGGGATCGGGGCTCAACATGTTTGTCAAATGCACCCCCTGTGCAC
AGCACCGTTATATGTGAACACAGGAAGGACTTGTACCGTTTTGGGTGTGA
TGGACGTTTGGCAAGGGGAAGGAGGACAAGGCCATTTGATCGATATCAAA
AATAAAGAGCGGGGTATATGAGAGCAATCAATGGGGTAGGGTGAGCAAAG
GCCTGTTCAAACCCTTGCGGTCCTGCCCTTTGCTCAAAGTGTCTTGCGTT
GTGCGCACCTAAGTATTCAACAACGCTCTTCAGTTCGATTCTCTCTTGTC
TGTGAACAATAACATGTTGTGACGTTTGCGGTGGAAAACGATCTTCTTGC
TAATCGTGGGAACGAGCTGCTTCGGTTGAAGTCTCGTTCTGCATGAGGTG
ATGGAGTTGGCTCACGGACGAAGACCCCGGTCGGCAGAGCGACCAAACAC
AACGAAGGGGGAAAGACCGCGAACGTCGTTAATTTTGAACACGATTGATG
AAAGCCGACCATGGAATGCAGCAGTGTGCACGAACGGTGGCACGTAGTTC
GCGTTCGTCTCGCCTATTATGGTGCCACTATTCACCTTTCGGTGCATGTG
TTTAACGTACCAGGCGTGTTCAAACACCAAATCCCTTCGCAGCAGTGTTT
TCTTATTCGTGTCCATGGGTTCCAACAGCAAACCACATCTTGGTTGACCT
TTCTTTTATTGCCCTACCCTGCCTCTTGCGGTGGCGTTATTATCGCGGAT
GTGTTAGCAACTTTCCCTTAGCATCGTCGACGTAAACAGAATTCATGTGC
TCGGCATTTTGGCTTCACGATCACTATTACTGTATAGTAGTAGTCGATAC
CGTTGACCTTCCCCATCGTCCTCGGCCAATGGGAGAAACACGTCAATCAA
GGTGCCATGAACCAACACGAGTAGGGT

Coding sequence (CDS) from alignment at Scaffold_627:422307..430183+

>EsuBft538_10a-0001 ID=EsuBft538_10a-0001|Name=EsuBft538_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=213bp|location=Sequence derived from alignment at Scaffold_627:422307..430183+ (Ectocarpus subulatus male Bft15b)
ATGTCGAGCGGAGGATGCAAGGTCTGGGCCGACTGCAGCTGTGGGTCATC
GTGCTCTTGCGGTGACGCGTGCACGTGCGGATCCGTGAAGCAGACCAAGA
CTGCGACTTCTCGCAGCGCCGGCGACTGCCCCTGCGGGGACAACTGCAAG
TGCGGATCCTCGTGCAAGTGCACCTCGGGAGGAACCTGCGACTGCGGCTG
CGGCTGCAAGTAG