EsuBft533_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft533_4a-0001
Unique Name	EsuBft533_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_405	contig	Scaffold_405:55883..56707 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	588596.U9URM5
ProteomeId	EsuBft533_4
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	4751\|Fungi
Length	82
Hectar predicted targeting category	other localisation
Evalue	4.98e-09
EggNOG OGs	29JY0@1\|root,2RT6R@2759\|Eukaryota,39VBJ@33154\|Opisthokonta,3P12S@4751\|Fungi
Date last modified	2016-06-13
Date creation	2016-06-13

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft533_4a	EsuBft533_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_405 55883..56707 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft533_4a-0001-exon	EsuBft533_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_405 55883..56707 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft533_4a-0001-cds	EsuBft533_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_405 55883..56707 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft533_4a-0001	EsuBft533_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_405 55883..56707 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_405:55883..56707-
coding sequence from alignment at Scaffold_405:55883..56707-

spliced messenger RNA

>EsuBft533_4a-0001 ID=EsuBft533_4a-0001|Name=EsuBft533_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=825bp|location=Sequence derived from alignment at Scaffold_405:55883..56707- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCCGAGGGCTTCCACGAGTACCTCAATAAGAACGTCTTGCCACA
GGCAGCAGACACCAAAACGTGCGACTACAACCCCTTCAAGCACGCTCCTG
TCACCAAGACGACGACTGAAACGGCATCAGGAGAGATAGGGGTGTCGTAC
TCGGTGACCGTTTGCACGGCGCGCTCCTGGCTGCACAAGCTGGGGTGCGA
GTACCGCGATCGCAAGTCGGGCCTGTACTTTAACGGCCATGACCGCGAAG
ACGTGCTCGCGTACCGGGTCGAGAAGTACCTCCCGGCGTACTTTGAGCAC
CGCGACTACATGGAGATCTGGATCGAGGCGACTTCGGACGAGGCGCGGTC
CTGGGAGGTGCAAGTGCAAGAGCAGGACAGGCAAGAGGTTGGGCGTGTTT
GGGTTTGCGTGCATGCCTTCAAGGAGACCCTCTCCGAACTTCCTCAGCAT
CTCTGCGAGAGGGTCACCAGTAAGAAAACTTACTCTAACGGCAGGAGAGC
GATCTTCTGCTACCAGGACGAGTGCATCTACAGGGCCAACGACGGCCAGC
GTTCCGCGTGGGTGCCACCCAACTATCACGCGCTCAAGAAGAAGGGAGAC
GGTCAAGGCATTATGATCTCTGGCACCATCGTCGACAACGTGGGGTTCGT
TGCGGGTGGCCAGGCTGATATCGACGAGGCGCAAGCCTTGCGGCGTAAGT
GGTGCGATACTTCTGCAACCGAACACGCGGCAGGTGACCCGACCAAGCCA
GAGACGTATCGTAACATCGACAAGCTCTACAAGGACGAAGACGGCAAGTT
CTGGACCTACTACAGATTCGAGTAA

protein sequence of EsuBft533_4a-0001

>EsuBft533_4 ID=EsuBft533_4|Name=EsuBft533_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=274bp
MTAEGFHEYLNKNVLPQAADTKTCDYNPFKHAPVTKTTTETASGEIGVSY
SVTVCTARSWLHKLGCEYRDRKSGLYFNGHDREDVLAYRVEKYLPAYFEH
RDYMEIWIEATSDEARSWEVQVQEQDRQEVGRVWVCVHAFKETLSELPQH
LCERVTSKKTYSNGRRAIFCYQDECIYRANDGQRSAWVPPNYHALKKKGD
GQGIMISGTIVDNVGFVAGGQADIDEAQALRRKWCDTSATEHAAGDPTKP
ETYRNIDKLYKDEDGKFWTYYRFE

mRNA from alignment at Scaffold_405:55883..56707-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft533_4a-0001 ID=EsuBft533_4a-0001|Name=EsuBft533_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=825bp|location=Sequence derived from alignment at Scaffold_405:55883..56707- (Ectocarpus subulatus male Bft15b)
ATGACAGCCGAGGGCTTCCACGAGTACCTCAATAAGAACGTCTTGCCACA
GGCAGCAGACACCAAAACGTGCGACTACAACCCCTTCAAGCACGCTCCTG
TCACCAAGACGACGACTGAAACGGCATCAGGAGAGATAGGGGTGTCGTAC
TCGGTGACCGTTTGCACGGCGCGCTCCTGGCTGCACAAGCTGGGGTGCGA
GTACCGCGATCGCAAGTCGGGCCTGTACTTTAACGGCCATGACCGCGAAG
ACGTGCTCGCGTACCGGGTCGAGAAGTACCTCCCGGCGTACTTTGAGCAC
CGCGACTACATGGAGATCTGGATCGAGGCGACTTCGGACGAGGCGCGGTC
CTGGGAGGTGCAAGTGCAAGAGCAGGACAGGCAAGAGGTTGGGCGTGTTT
GGGTTTGCGTGCATGCCTTCAAGGAGACCCTCTCCGAACTTCCTCAGCAT
CTCTGCGAGAGGGTCACCAGTAAGAAAACTTACTCTAACGGCAGGAGAGC
GATCTTCTGCTACCAGGACGAGTGCATCTACAGGGCCAACGACGGCCAGC
GTTCCGCGTGGGTGCCACCCAACTATCACGCGCTCAAGAAGAAGGGAGAC
GGTCAAGGCATTATGATCTCTGGCACCATCGTCGACAACGTGGGGTTCGT
TGCGGGTGGCCAGGCTGATATCGACGAGGCGCAAGCCTTGCGGCGTAAGT
GGTGCGATACTTCTGCAACCGAACACGCGGCAGGTGACCCGACCAAGCCA
GAGACGTATCGTAACATCGACAAGCTCTACAAGGACGAAGACGGCAAGTT
CTGGACCTACTACAGATTCGAGTAA

Coding sequence (CDS) from alignment at Scaffold_405:55883..56707-

>EsuBft533_4a-0001 ID=EsuBft533_4a-0001|Name=EsuBft533_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=825bp|location=Sequence derived from alignment at Scaffold_405:55883..56707- (Ectocarpus subulatus male Bft15b)
ATGACAGCCGAGGGCTTCCACGAGTACCTCAATAAGAACGTCTTGCCACA
GGCAGCAGACACCAAAACGTGCGACTACAACCCCTTCAAGCACGCTCCTG
TCACCAAGACGACGACTGAAACGGCATCAGGAGAGATAGGGGTGTCGTAC
TCGGTGACCGTTTGCACGGCGCGCTCCTGGCTGCACAAGCTGGGGTGCGA
GTACCGCGATCGCAAGTCGGGCCTGTACTTTAACGGCCATGACCGCGAAG
ACGTGCTCGCGTACCGGGTCGAGAAGTACCTCCCGGCGTACTTTGAGCAC
CGCGACTACATGGAGATCTGGATCGAGGCGACTTCGGACGAGGCGCGGTC
CTGGGAGGTGCAAGTGCAAGAGCAGGACAGGCAAGAGGTTGGGCGTGTTT
GGGTTTGCGTGCATGCCTTCAAGGAGACCCTCTCCGAACTTCCTCAGCAT
CTCTGCGAGAGGGTCACCAGTAAGAAAACTTACTCTAACGGCAGGAGAGC
GATCTTCTGCTACCAGGACGAGTGCATCTACAGGGCCAACGACGGCCAGC
GTTCCGCGTGGGTGCCACCCAACTATCACGCGCTCAAGAAGAAGGGAGAC
GGTCAAGGCATTATGATCTCTGGCACCATCGTCGACAACGTGGGGTTCGT
TGCGGGTGGCCAGGCTGATATCGACGAGGCGCAAGCCTTGCGGCGTAAGT
GGTGCGATACTTCTGCAACCGAACACGCGGCAGGTGACCCGACCAAGCCA
GAGACGTATCGTAACATCGACAAGCTCTACAAGGACGAAGACGGCAAGTT
CTGGACCTACTACAGATTCGAGTAA