EsuBft533_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft533_3a-0001
Unique NameEsuBft533_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_405contigScaffold_405:46690..48128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G873
ProteomeIdEsuBft533_3
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteretrovirus-related pol polyprotein from type-2 retrotransposable element r2dm os:drosophila mel [Automatic annotation]
Nb exon4
Max annot lvl2759|Eukaryota
Length1038
Hectar predicted targeting categoryother localisation
Evalue3.29e-87
EggNOG OGsCOG0553@1|root,COG2940@1|root,COG5076@1|root,KOG1075@1|root,KOG0383@2759|Eukaryota,KOG0384@2759|Eukaryota,KOG1075@2759|Eukaryota,KOG1081@2759|Eukaryota,KOG1474@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
KEGG rclassRC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG koko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG ReactionR00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathwayko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG ModuleM00089
EC2.1.1.43,2.3.1.15,3.6.4.12
Descriptionacetylation-dependent protein binding
COG categoryBK
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft533_3aEsuBft533_3aEctocarpus subulatus male Bft15bgeneScaffold_405 46690..48128 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft533_3a-0001-exonEsuBft533_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_405 46690..47157 +
EsuBft533_3a-0001-exonagat-exon-95227Ectocarpus subulatus male Bft15bexonScaffold_405 47215..47517 +
EsuBft533_3a-0001-exonagat-exon-95229Ectocarpus subulatus male Bft15bexonScaffold_405 47566..47720 +
EsuBft533_3a-0001-exonagat-exon-95228Ectocarpus subulatus male Bft15bexonScaffold_405 48017..48128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft533_3a-0001-cdsEsuBft533_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_405 46690..47157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft533_3a-0001EsuBft533_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_405 46690..48128 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft533_3a-0001 ID=EsuBft533_3a-0001|Name=EsuBft533_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1038bp|location=Sequence derived from alignment at Scaffold_405:46690..48128+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACGCGTTGAGTGAGGATAGCTGTATACTGAAAATCCGTAGCATTAG
TGAGGGCCAGGCAGGTTTCCGGAAGAAGAGGGGGTGCGTAGACCACGCAT
GCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACG
TACTGCTTCTTCCTGGACGTGAAAAAGGCATACGATACCGTGCGGAGAAA
TGGGCTGTGGAATCAACTGTCCAAGTACGGCAACAGGGGGAAAATGTGGA
GAGTGCTGAAGAAGATAACAGAGTGCACGAAAAGCGCGGTCATGCTAGAC
GGAGAACTGTCACAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTG
CACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCGGTTGGAAG
TCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACAGAAACGTCG
GTGTCAGTCAGGAATGCTTCTACTGCAATTGTCATGGTATCCAACGAGGA
CAAGGAGGAACCAGTAGAACATAGATGGAGGTGGGGGATGTGGGGGATCG
AGGAGATTTGCAGTAATGGACCAGTACGCATACCTCGGAGTAGAGATCGC
AAAAGGCTCCTCGTGGTGTGCTCACATGTCCAAGGCAGCGGAAAAGGGCA
AAGCACCACCAGCAGGGGAGCTGCACCCAATAGACTACTCGCAAACCGGC
ACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCG
CCGCTAGAGTACGCCGGAGAAATGAAAGCAGCGAAAACCATCCTAGGATG
CTCCAGGCGCACAAGTAGCGCAGCCGTCAGGGCAGAATTGGGGATCCAAT
CCCTACGGGCGGGAAGCGACGCAAGGAAGCTGACATGGCAGTATCGTGTT
TGCGGCCTACGCCACTTATTTATCGGACAACCCACGGAATGGGTCAAGGT
TGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGG
AAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATANNN
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protein sequence of EsuBft533_3a-0001

>EsuBft533_3 ID=EsuBft533_3|Name=EsuBft533_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=346bp
MDALSEDSCILKIRSISEGQAGFRKKRGCVDHACTVGRIIQGRKRAGKPT
YCFFLDVKKAYDTVRRNGLWNQLSKYGNRGKMWRVLKKITECTKSAVMLD
GELSQFFDIEQGVPQGCTLSPTLFQVFINDRLEVVEAVRKGVKVGDTETS
VSVRNASTAIVMVSNEDKEEPVEHRWRWGMWGIEEICSNGPVRIPRSRDR
KRLLVVCSHVQGSGKGQSTTSRGAAPNRLLANRHLDTRIKLTVLKSVIVP
PLEYAGEMKAAKTILGCSRRTSSAAVRAELGIQSLRAGSDARKLTWQYRV
CGLRHLFIGQPTEWVKVVEDVWKGLDIDEDETLETEGLQGFKEKIX
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mRNA from alignment at Scaffold_405:46690..48128+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft533_3a-0001 ID=EsuBft533_3a-0001|Name=EsuBft533_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1439bp|location=Sequence derived from alignment at Scaffold_405:46690..48128+ (Ectocarpus subulatus male Bft15b)
ATGGACGCGTTGAGTGAGGATAGCTGTATACTGAAAATCCGTAGCATTAG
TGAGGGCCAGGCAGGTTTCCGGAAGAAGAGGGGGTGCGTAGACCACGCAT
GCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACG
TACTGCTTCTTCCTGGACGTGAAAAAGGCATACGATACCGTGCGGAGAAA
TGGGCTGTGGAATCAACTGTCCAAGTACGGCAACAGGGGGAAAATGTGGA
GAGTGCTGAAGAAGATAACAGAGTGCACGAAAAGCGCGGTCATGCTAGAC
GGAGAACTGTCACAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTG
CACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCGGTTGGAAG
TCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACAGAAACGTCG
GTGTCAGTCAGGAATGCTGTTTGCGGATGATTTTTTCGGTATTTCGGACA
CCCCTGAGGGACTAGTTCTAGCTAGTCTACTGCAATTGTCATGGTATCCA
ACGAGGACAAGGAGGAACCAGTAGAACATAGATGGAGGTGGGGGATGTGG
GGGATCGAGGAGATTTGCAGTAATGGACCAGTACGCATACCTCGGAGTAG
AGATCGCAAAAGGCTCCTCGTGGTGTGCTCACATGTCCAAGGCAGCGGAA
AAGGGCAAAGCACCACCAGCAGGGGAGCTGCACCCAATAGACTACTCGCA
AACCGGCACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAAT
CGTACCGCCGCTAGAGTACGCCGGAGAAGTATGAGAAGGAAATAAGAAGG
TAGTCAAAGAACTCGAGGCGGCGCAGATGAAAGCAGCGAAAACCATCCTA
GGATGCTCCAGGCGCACAAGTAGCGCAGCCGTCAGGGCAGAATTGGGGAT
CCAATCCCTACGGGCGGGAAGCGACGCAAGGAAGCTGACATGGCAGTATC
GTGTTTGCGGCCTACGCCACTTATTTATCGGGTGAGACTGTTTTGGTGAT
GTATTAACTTCACGAGAGGTAGACGACCGTCCTTCACATGGACGAAAGAG
GGAGTGCTCAAAGAGCGGCCTCCACAGCAAGGAGGGGCCCCGTGAATCAT
CGCCGTGCCCCCTACCAAACGGCAACCTTACTAGTCTGCGTGACACCAAA
TCATCCAGCACATGTATCCAACACCAATGTTCGCAGACCCACGAACATAT
AGCATGTGCGGGATGGGAGAGGAGAGGTTGCCGAGAATTGTATGGGAGGC
GTAATGGGCAAACAAGACGAGGGGTAGACAACCCACGGAATGGGTCAAGG
TTGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTG
GAAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATANNN
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Coding sequence (CDS) from alignment at Scaffold_405:46690..48128+

>EsuBft533_3a-0001 ID=EsuBft533_3a-0001|Name=EsuBft533_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1038bp|location=Sequence derived from alignment at Scaffold_405:46690..48128+ (Ectocarpus subulatus male Bft15b)
ATGGACGCGTTGAGTGAGGATAGCTGTATACTGAAAATCCGTAGCATTAG
TGAGGGCCAGGCAGGTTTCCGGAAGAAGAGGGGGTGCGTAGACCACGCAT
GCACGGTAGGGAGAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACG
TACTGCTTCTTCCTGGACGTGAAAAAGGCATACGATACCGTGCGGAGAAA
TGGGCTGTGGAATCAACTGTCCAAGTACGGCAACAGGGGGAAAATGTGGA
GAGTGCTGAAGAAGATAACAGAGTGCACGAAAAGCGCGGTCATGCTAGAC
GGAGAACTGTCACAATTCTTCGACATTGAGCAGGGGGTCCCACAAGGTTG
CACGCTGTCCCCAACATTGTTCCAGGTGTTCATCAACGATCGGTTGGAAG
TCGTAGAGGCAGTCCGGAAGGGAGTAAAAGTAGGGGACACAGAAACGTCG
GTGTCAGTCAGGAATGCTTCTACTGCAATTGTCATGGTATCCAACGAGGA
CAAGGAGGAACCAGTAGAACATAGATGGAGGTGGGGGATGTGGGGGATCG
AGGAGATTTGCAGTAATGGACCAGTACGCATACCTCGGAGTAGAGATCGC
AAAAGGCTCCTCGTGGTGTGCTCACATGTCCAAGGCAGCGGAAAAGGGCA
AAGCACCACCAGCAGGGGAGCTGCACCCAATAGACTACTCGCAAACCGGC
ACCTCGATACACGCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCG
CCGCTAGAGTACGCCGGAGAAATGAAAGCAGCGAAAACCATCCTAGGATG
CTCCAGGCGCACAAGTAGCGCAGCCGTCAGGGCAGAATTGGGGATCCAAT
CCCTACGGGCGGGAAGCGACGCAAGGAAGCTGACATGGCAGTATCGTGTT
TGCGGCCTACGCCACTTATTTATCGGACAACCCACGGAATGGGTCAAGGT
TGTAGAGGACGTATGGAAGGGGCTCGACATCGACGAAGATGAAACGCTGG
AAACGGAGGGTCTACAGGGGTTCAAGGAGAAGATANNN
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