EsuBft5323_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft5323_2a-0001
Unique NameEsuBft5323_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_49contigScaffold_49:227789..229279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog654926.Q8QN66_ESV1K
ProteomeIdEsuBft5323_2
Protein domainsIPR008921
Protein domainsIPR013748
Protein domainsPTHR11669
Protein domainsG3DSA
Ownerapollo_admin@sb-roscoff.fr
Noteprobable replication factor c subunit 5 os:dictyostelium discoideum gn:rfc5 pe:3 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl10239|Viruses
Length660
Hectar predicted targeting categoryother localisation
Evalue2.7e-56
EggNOG OGs4QAR1@10239|Viruses,4QUNA@35237|dsDNA viruses no RNA stage
Ec32 ortholog descriptionEsV-1-225
Ec32 orthologEc-06_006720.1
Date last modified2016-06-14
Date creation2016-06-14
GOsGO:0008150,GO:0016032,GO:0019058,GO:0019079,GO:0039686,GO:0039693,GO:0044403,GO:0044419,GO:0051704
DescriptionATPase activity
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
GO0003677
GO0006260
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft5323_2aEsuBft5323_2aEctocarpus subulatus male Bft15bgeneScaffold_49 227789..229279 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5323_2a-0001-exonagat-exon-50849Ectocarpus subulatus male Bft15bexonScaffold_49 227789..227807 +
EsuBft5323_2a-0001-exonagat-exon-50847Ectocarpus subulatus male Bft15bexonScaffold_49 228024..228119 +
EsuBft5323_2a-0001-exonagat-exon-50848Ectocarpus subulatus male Bft15bexonScaffold_49 228605..228954 +
EsuBft5323_2a-0001-exonEsuBft5323_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_49 229085..229279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5323_2a-0001-cdsEsuBft5323_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_49 227789..227807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft5323_2a-0001EsuBft5323_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_49 227789..229279 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft5323_2a-0001 ID=EsuBft5323_2a-0001|Name=EsuBft5323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=660bp|location=Sequence derived from alignment at Scaffold_49:227789..229279+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTGGATAGATTCGGGGCCAGGAGCGGAAGCGAGAGAAAAACTCAC
TTTGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGATCT
CCAGAAGGTTTCGAGGCATCAACCTTTTACAGAGCCTCAGCCTTGGTGAC
GCCACAACCCTTACTGTGCGCGACGACCAGGCCGTGTATACTACGTGTGG
CTTACCCTCCCCCGCCCAAACCAGTGCGATTTTCGACGTGCTGCTCAACC
AAAGCTTTTCGGTTGGGTACACAACGCTCATGTCACTTGTTGACCGCTAC
CAGTTTTCTCTCGTACAGGTTATCCCCCCGCTGGTAGAGGGTATCATCTC
GTGCGGTGATGAAAAGATGGGTGTGCACAGAGTGGGAGAGGTATTGTCCA
CGCTTGCTGATGTCGAATGTTGCTTATCGGATGGAGGGTCGGAACGTATC
ACCGTAGGCGCGATGATGGGCAACTGCTTGCCATGTCTAGACGAACAACA
AGGGGCGGCTAGAACCAGCTACTTCGATCCCGACATCAGCGAAAAAAAGA
CGATGGCGTACACGGCCAGCGAGTTTGGCAAAGAGAATTGTAAGCTTGGA
TTCAGCATCAAGTATAAGGTACATTCACCACAATCAAACAGTCAACGTCT
CGGCTCGTAA
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protein sequence of EsuBft5323_2a-0001

>EsuBft5323_2 ID=EsuBft5323_2|Name=EsuBft5323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MTWIDSGPGAEAREKLTLQEKLAYAGIRTPDLISRRFRGINLLQSLSLGD
ATTLTVRDDQAVYTTCGLPSPAQTSAIFDVLLNQSFSVGYTTLMSLVDRY
QFSLVQVIPPLVEGIISCGDEKMGVHRVGEVLSTLADVECCLSDGGSERI
TVGAMMGNCLPCLDEQQGAARTSYFDPDISEKKTMAYTASEFGKENCKLG
FSIKYKVHSPQSNSQRLGS
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mRNA from alignment at Scaffold_49:227789..229279+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft5323_2a-0001 ID=EsuBft5323_2a-0001|Name=EsuBft5323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1491bp|location=Sequence derived from alignment at Scaffold_49:227789..229279+ (Ectocarpus subulatus male Bft15b)
ATGACCTGGATAGATTCGGGTGATTGTCAATTAATTGCATTTTTTTTTTT
TTGGTATTCACTTCAAATCAGCGCTCACGGCACTAGTGCCGTTTTCTCCA
ACCCGTGGTCACACAGAAGAGCCCCTCTCTACCCTCCCCTCCTGCGGTAC
TTTGCCTTCGATTTTTAATGCGAGAAGAGTTCGGCACTCTCTTCCCTCTG
TGTACACACGAACTATTATAGCGCTATCCACCTAGGGCCAGGAGCGGAAG
CGAGAGAAAAACTCACTTTGCAAGAAAAGCTCGCTTACGCCGGGATTCGA
ACCCCTGACCTGATCTCCAGAAGGTTTCGAGGTTACCAACCAGACCACCG
GGGCTACTGCAATGATGGCCTTGGTTGGGTGTTCTTGTTCATTCATTATA
TGTCCACGGACTCATTCTGACAGCACTTCAGACAGCAAAGCAGCTGCACG
CCCCGAGCTTGTGTACCATGCACCATGGTGTTATTATTGTACAGACAGCA
CTTCAGACAGCAGTAGTACACCTGTAGCCATTCGGCTACCCTGCCAGGGT
GGGGAAATTTCACCCTGGCAAGGTCACCAGAAAACTACCCTGTAGACTTG
ACCCAAACGCAGTGTGAGGCAGGGTGGGTACCCTGCCAGGGTACCCTGTA
CGTACCCTGCCACTCAGGGACCCTGGCGGGGTGCACACCCTGGGAAGACC
CTGTGGAGACCGTGTCAGCCAAGTGGACTGACGGGGCCGAAAATTTGGAT
ATTTTCCTTTCGATATTTGTTTGGTTATTNCTGTTGTGAACGTTTGCGCG
GGAGATGCGAGGCAAGGCATCAACCTTTTACAGAGCCTCAGCCTTGGTGA
CGCCACAACCCTTACTGTGCGCGACGACCAGGCCGTGTATACTACGTGTG
GCTTACCCTCCCCCGCCCAAACCAGTGCGATTTTCGACGTGCTGCTCAAC
CAAAGCTTTTCGGTTGGGTACACAACGCTCATGTCACTTGTTGACCGCTA
CCAGTTTTCTCTCGTACAGGTTATCCCCCCGCTGGTAGAGGGTATCATCT
CGTGCGGTGATGAAAAGATGGGTGTGCACAGAGTGGGAGAGGTATTGTCC
ACGCTTGCTGATGTCGAATGTTGCTTATCGGATGGAGGGTCGGAACGTAT
CACCGTAGGCGCGATGGTGGGTGCCTTTCATCGTTGAATCAATTCCTCGC
ATTGGTATATAATATCACGTGGGGGGGGAAGGGTTGTGGTCGAGGGGCTC
AATAATCATTAAAAAATATTGGTTTGTATCTCATACTTCGCCGAAGATGG
GCAACTGCTTGCCATGTCTAGACGAACAACAAGGGGCGGCTAGAACCAGC
TACTTCGATCCCGACATCAGCGAAAAAAAGACGATGGCGTACACGGCCAG
CGAGTTTGGCAAAGAGAATTGTAAGCTTGGATTCAGCATCAAGTATAAGG
TACATTCACCACAATCAAACAGTCAACGTCTCGGCTCGTAA
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Coding sequence (CDS) from alignment at Scaffold_49:227789..229279+

>EsuBft5323_2a-0001 ID=EsuBft5323_2a-0001|Name=EsuBft5323_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_49:227789..229279+ (Ectocarpus subulatus male Bft15b)
ATGACCTGGATAGATTCGGGGCCAGGAGCGGAAGCGAGAGAAAAACTCAC
TTTGCAAGAAAAGCTCGCTTACGCCGGGATTCGAACCCCTGACCTGATCT
CCAGAAGGTTTCGAGGCATCAACCTTTTACAGAGCCTCAGCCTTGGTGAC
GCCACAACCCTTACTGTGCGCGACGACCAGGCCGTGTATACTACGTGTGG
CTTACCCTCCCCCGCCCAAACCAGTGCGATTTTCGACGTGCTGCTCAACC
AAAGCTTTTCGGTTGGGTACACAACGCTCATGTCACTTGTTGACCGCTAC
CAGTTTTCTCTCGTACAGGTTATCCCCCCGCTGGTAGAGGGTATCATCTC
GTGCGGTGATGAAAAGATGGGTGTGCACAGAGTGGGAGAGGTATTGTCCA
CGCTTGCTGATGTCGAATGTTGCTTATCGGATGGAGGGTCGGAACGTATC
ACCGTAGGCGCGATGATGGGCAACTGCTTGCCATGTCTAGACGAACAACA
AGGGGCGGCTAGAACCAGCTACTTCGATCCCGACATCAGCGAAAAAAAGA
CGATGGCGTACACGGCCAGCGAGTTTGGCAAAGAGAATTGTAAGCTTGGA
TTCAGCATCAAGTATAAGGTACATTCACCACAATCAAACAGTCAACGTCT
CGGCTCGTAA
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