EsuBft528_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft528_4a-0001
Unique NameEsuBft528_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:60011..61723 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft528_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length30
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4aEsuBft528_4aEctocarpus subulatus male Bft15bgeneScaffold_195 60011..61723 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4a-0001-exonEsuBft528_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 60011..60235 -
EsuBft528_4a-0001-exonagat-exon-78254Ectocarpus subulatus male Bft15bexonScaffold_195 61647..61723 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4a-0001-exonagat-three_prime_utr-17812Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 60011..60124 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4a-0001-cdsEsuBft528_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 60125..60235 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4a-0001-exonagat-five_prime_utr-11314Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 61662..61723 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_4a-0001EsuBft528_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 60125..61661 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft528_4a-0001 ID=EsuBft528_4a-0001|Name=EsuBft528_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=302bp|location=Sequence derived from alignment at Scaffold_195:60011..61723- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTTGGTGTAAAGGGGATCGTGACGCCCTTTTTCCGCCGTGAGTAAGGGGC
GAGACCGGCCACATGCAGGCTGGAAAGTTTGCTCATCGTGCCGGTCGTAC
GAGCACCGAAGTGATCGAATCCGGGATGATTGATAAGAGGTACAGATCGT
CCTACCGGAACGCCAACCAAATCGTGGAGGAAGGGTGACGGTTAAGGCCT
TCGAAGGCCAGCAACATCTACTTCGAGCAGCACACTTCCGATTCTCTCTG
GTGTCCGATAAGCGGCAGGAGTGACGCGAAGAGGCGGCGATGATCGCTGG
GG
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protein sequence of EsuBft528_4a-0001

>EsuBft528_4 ID=EsuBft528_4|Name=EsuBft528_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=41bp
MQAGKFAHRAGRTSTEVIESGMIDKRYRSSYRNANQIVEEG
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mRNA from alignment at Scaffold_195:60011..61723-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft528_4a-0001 ID=EsuBft528_4a-0001|Name=EsuBft528_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1713bp|location=Sequence derived from alignment at Scaffold_195:60011..61723- (Ectocarpus subulatus male Bft15b)
TTTGGTGTAAAGGGGATCGTGACGCCCTTTTTCCGCCGTGAGTAAGGGGC
GAGACCGGCCACATGCAGGCTGGAAAGGTAAGGATAAAAAAAACAATGCG
GCGTTGTTGCTGTCTGACAGTCTTGTGACAGTCTTGTTCGAATGCGGAAG
ATACGAATATACGAATACTGCTGCTGTTCAATTGCTGCTGCTACTGCGGC
TCAATGTTGCTCGGCGGCAACATGGAAAGTGTCAGGCATGTGCAGCAGTA
GGCCATGTGAAGAAAAATCTACGTATGTATGATAATTTGTCATCCTGGAC
GCAAAACCGTTGCTACTGTTCGAAAAACAGCTACTACGTCAGTGCTGCAC
TGCTGTGGGATGACAACATACGATTCACGCACGCCCGTTCTACAGTAGTA
GATCAGGGGCCTAAGAAGTCGCGCATTCGGTGGGAGATGTACCTGCACCA
CTGTTGCTAGGAGGCAACGCGGCAGGCGTGGTGTCTGGTGTTTAGTGTTG
TTTCTGCGGTTGTAAGATCGTTTCGCAAGAACCTACAGCAGTACACTGCT
CTACACACTGTCGTACGTTGTACAGCAGACCATTGGTTTATTGGACATTG
GACGAACCGGAGACAATCACTCCCTGCGTAAAGCGGTTTGGTTCTAATTC
TACGTGTTTCATGTACATGCAGCAGCAGGGGATGCCATCCAACCCATGAC
GTCCAATCCCCAGCAACCTCTAGCCACGTGTGGAGGATGAATACGTGGGT
ATGTGATGCACAGCGTGCACAGTATAATAAGGTCAAATAGGGACACGCAA
TATGAGGAAATTAGAATTACCTCCTGCAGTATATACACGACCAACAACAC
CCCCCTCGGAGCACTGCTTCATGAAGCTGGCACTTCCTCTCCAAATGTGG
TGGAAACTCTCCAGAAAGAAATTGAAGGAATGATACTCTGTGAATGGGTC
TTGTCCGGGTTGACGTCTCTTTTCTTCGTTGCAAACATTTGTGGCGTTCT
TTTCCACGATCATATTCCTGCAGATCGTCTTCGCTCTATGGTCACAGTCA
GATATAGGTGATGCTGGCGATCGGGTAACACTCCTCGCGTGCGCTTGGTT
ATCAACAAAAGTAACCTTGATAGCCAGATTTCTAGCCACACGACAAGCAG
TGAGATGCAAGGTGCACACGAGCTGCCCGAAGTACGGAAGCATCAGATAA
GAGACGCTCCAGAAACCTTCATGCACGCCGTTACTCCAAGTAAACGAGGA
AGCGCTCATGGCGGGACACGGTGGGACTTGGATCCGAAGGACTCCAAGCG
TCTCCAGCGAAGGAGCCTGATGTTGAACAACAGCAACAACCACAAACACC
AGCAACGACAACAACAACGAAGCGTGGCTGTCGTGGCCAACCATACAAAA
AGAACGCCCTCTCCCCCCCTGTCCGACTCTTTCCCTTCCCGGCTTCCCTC
GTCACGCTCCGTTGGCTTGCTCTTTGTCTTCCGCATAGTTTGCTCATCGT
GCCGGTCGTACGAGCACCGAAGTGATCGAATCCGGGATGATTGATAAGAG
GTACAGATCGTCCTACCGGAACGCCAACCAAATCGTGGAGGAAGGGTGAC
GGTTAAGGCCTTCGAAGGCCAGCAACATCTACTTCGAGCAGCACACTTCC
GATTCTCTCTGGTGTCCGATAAGCGGCAGGAGTGACGCGAAGAGGCGGCG
ATGATCGCTGGGG
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Coding sequence (CDS) from alignment at Scaffold_195:60011..61723-

>EsuBft528_4a-0001 ID=EsuBft528_4a-0001|Name=EsuBft528_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=126bp|location=Sequence derived from alignment at Scaffold_195:60011..61723- (Ectocarpus subulatus male Bft15b)
ATGCAGGCTGGAAAGTTTGCTCATCGTGCCGGTCGTACGAGCACCGAAGT
GATCGAATCCGGGATGATTGATAAGAGGTACAGATCGTCCTACCGGAACG
CCAACCAAATCGTGGAGGAAGGGTGA
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