EsuBft528_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft528_3a-0001
Unique Name	EsuBft528_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_195	contig	Scaffold_195:56824..58851 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7G873
ProteomeId	EsuBft528_3
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Max annot lvl	2759\|Eukaryota
Length	198
Evalue	8.11e-114
EggNOG OGs	COG0553@1\|root,COG2940@1\|root,COG5076@1\|root,KOG1075@1\|root,KOG0383@2759\|Eukaryota,KOG0384@2759\|Eukaryota,KOG1075@2759\|Eukaryota,KOG1081@2759\|Eukaryota,KOG1474@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG rclass	RC00003,RC00004,RC00039,RC00041,RC00060,RC00181,RC00496
KEGG ko	ko:K11367,ko:K11424,ko:K11654,ko:K13506,ko:K14437
KEGG Reaction	R00851,R03875,R03938,R04866,R04867,R09380
KEGG Pathway	ko00310,ko00561,ko00564,ko01100,ko01110,ko05202,map00310,map00561,map00564,map01100,map01110,map05202
KEGG Module	M00089
EC	2.1.1.43,2.3.1.15,3.6.4.12
Description	acetylation-dependent protein binding
COG category	BK
BRITE	ko00000,ko00001,ko00002,ko01000,ko01004,ko03021,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft528_3a	EsuBft528_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_195 56824..58851 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft528_3a-0001-exon	agat-exon-78253	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 56824..57550 +
EsuBft528_3a-0001-exon	EsuBft528_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_195 57593..58851 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft528_3a-0001-cds	EsuBft528_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_195 56824..57550 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft528_3a-0001	EsuBft528_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_195 56824..58851 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_195:56824..58851+
coding sequence from alignment at Scaffold_195:56824..58851+

spliced messenger RNA

>EsuBft528_3a-0001 ID=EsuBft528_3a-0001|Name=EsuBft528_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1986bp|location=Sequence derived from alignment at Scaffold_195:56824..58851+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTGCG
AGGTGTGAACGGTGGATTAGTCAGCAGTGGGAAGGGAAAAAGGGAAGTTC
TAGCAGGACACTACAAGAAACTTGGAGTGCCCTCGGAGAATGAAGCTATT
GACCAAGTGGTTAAGAAGGAAGTGGACGCATGGGCCCAAAAAGAAGAAGA
GACATCGAAGGCAGACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTG
AGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCA
GGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGAT
GATCCAGCTGATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGTATA
CGCATCTTAGAAGGAGGGAAGGAGTAGTTGTGAACTTGTTTAAGGAAGGA
GACAAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGACCCAGGAAACTAC
AGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCT
GAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGG
GCCAGGCAGGTTCCGAAAGAAGAGGGGGTAGAAAGAGGGCGGGAAAGCCG
ACGTACTGTGCTTCCTGGACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAAATTGACGCGGCGAAGAAGTTCACTGAT
AAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGTCGTCGTGGTATGCAA
CGAGAACAAGGAGGGACCAGTAGAACATAGATGGAAGTGGGGGATCGAGG
AGATTGCAGTAGTGGACCAGTACACATACCTTGGAGTAGAGATCGCAAAA
GACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATC
ACGAGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACAC
GCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTAC
GCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGC
GGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAA
GTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGA
AGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGA
GGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGA
GGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAG
GGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGG
GTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATC
TGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTG
AAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGG
AACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAAC
GTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCACAGTG
ATTGCGGGTTCGAATGCGAAGACCGTGTTCATGTAG

protein sequence of EsuBft528_3a-0001

>EsuBft528_3 ID=EsuBft528_3|Name=EsuBft528_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=661bp
MVKKTAQGGDTGVATLRGVNGGLVSSGKGKREVLAGHYKKLGVPSENEAI
DQVVKKEVDAWAQKEEETSKADVGNVELEKEFTEDEVEACVNKLKCHKAA
GADGIVNEFMKFGGKGMIQLMVLLYNWVWKNEYTHLRRREGVVVNLFKEG
DKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTDPGNY
RGITLLNTVGKVFCKLLNDRIVGVLEKEHSISEGQAGSERRGGRKRAGKP
TYCASWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQIDAAKKFTD
KWRLSANVKKSVVVVCNENKEGPVEHRWKWGIEEIAVVDQYTYLGVEIAK
DCSWNAHMSKVAEKGKSRAGKLHPILANRHLDTRIKLTVLKSVIVPPLEY
AGEVWEGNKKVVKELEAAQMKAAKTILGCSRRTSNAAVRAELGIQSLRSG
RDARKLTWQYRMCGMGEERLPRIVWEAKWANKKRGRQPTEWVKVVEDVWK
GLDIDEDETLETEGLQGFKEKISVACAEREEQNLRKESKDKEGLEVYGML
KEGIGFKDYLHGPMDAGTKLKVKFRTGDIGLRERRRRHRTVDEEDDEFTV
IAGSNAKTVFM

mRNA from alignment at Scaffold_195:56824..58851+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft528_3a-0001 ID=EsuBft528_3a-0001|Name=EsuBft528_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2028bp|location=Sequence derived from alignment at Scaffold_195:56824..58851+ (Ectocarpus subulatus male Bft15b)
ATGGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTGCG
AGGTGTGAACGGTGGATTAGTCAGCAGTGGGAAGGGAAAAAGGGAAGTTC
TAGCAGGACACTACAAGAAACTTGGAGTGCCCTCGGAGAATGAAGCTATT
GACCAAGTGGTTAAGAAGGAAGTGGACGCATGGGCCCAAAAAGAAGAAGA
GACATCGAAGGCAGACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTG
AGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCA
GGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGAT
GATCCAGCTGATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGTATA
CGCATCTTAGAAGGAGGGAAGGAGTAGTTGTGAACTTGTTTAAGGAAGGA
GACAAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGACCCAGGAAACTAC
AGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCT
GAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGG
GCCAGGCAGGTTCCGAAAGAAGAGGGGGTGCGTAGACCACGTGTTCACGG
TAGGGAGAAATCATCCAAGGTAGAAAGAGGGCGGGAAAGCCGACGTACTG
TGCTTCCTGGACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCAAATTGACGCGGCGAAGAAGTTCACTGATAAGTGGAG
ATTGTCTGCCAACGTTAAGAAGAGTGTCGTCGTGGTATGCAACGAGAACA
AGGAGGGACCAGTAGAACATAGATGGAAGTGGGGGATCGAGGAGATTGCA
GTAGTGGACCAGTACACATACCTTGGAGTAGAGATCGCAAAAGACTGCTC
GTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATCACGAGCAG
GGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAA
TTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTACGCCGGAGA
AGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGCGGCGCAGA
TGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAAGTAATGCA
GCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGAAGAGACGC
GAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGAGGAGAGGT
TGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGAGGGGTAGA
CAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAGGGGCTCGA
CATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGGGTTCAAGG
AGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATCTGAGGAAA
GAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTGAAGGAAGG
AATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGGAACAAAGC
TTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAACGTCGACGA
AGACATAGGACGGTAGACGAGGAAGACGACGAGTTCACAGTGATTGCGGG
TTCGAATGCGAAGACCGTGTTCATGTAG

Coding sequence (CDS) from alignment at Scaffold_195:56824..58851+

>EsuBft528_3a-0001 ID=EsuBft528_3a-0001|Name=EsuBft528_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1986bp|location=Sequence derived from alignment at Scaffold_195:56824..58851+ (Ectocarpus subulatus male Bft15b)
ATGGTAAAAAAGACCGCGCAAGGGGGGGATACAGGGGTAGCAACTTTGCG
AGGTGTGAACGGTGGATTAGTCAGCAGTGGGAAGGGAAAAAGGGAAGTTC
TAGCAGGACACTACAAGAAACTTGGAGTGCCCTCGGAGAATGAAGCTATT
GACCAAGTGGTTAAGAAGGAAGTGGACGCATGGGCCCAAAAAGAAGAAGA
GACATCGAAGGCAGACGTTGGGAACGTAGAACTAGAAAAGGAGTTCACTG
AGGACGAGGTTGAGGCGTGTGTGAACAAGCTGAAGTGCCACAAAGCAGCA
GGAGCGGATGGGATAGTCAACGAGTTCATGAAGTTTGGGGGGAAGGGGAT
GATCCAGCTGATGGTACTGCTATACAATTGGGTGTGGAAAAACGAGTATA
CGCATCTTAGAAGGAGGGAAGGAGTAGTTGTGAACTTGTTTAAGGAAGGA
GACAAGACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTGACCCAGGAAACTAC
AGGGGGATCACACTGTTGAACACAGTAGGAAAAGTGTTCTGTAAGCTGCT
GAACGATAGGATAGTGGGAGTATTGGAGAAGGAACATAGCATTAGTGAGG
GCCAGGCAGGTTCCGAAAGAAGAGGGGGTAGAAAGAGGGCGGGAAAGCCG
ACGTACTGTGCTTCCTGGACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAAATTGACGCGGCGAAGAAGTTCACTGAT
AAGTGGAGATTGTCTGCCAACGTTAAGAAGAGTGTCGTCGTGGTATGCAA
CGAGAACAAGGAGGGACCAGTAGAACATAGATGGAAGTGGGGGATCGAGG
AGATTGCAGTAGTGGACCAGTACACATACCTTGGAGTAGAGATCGCAAAA
GACTGCTCGTGGAATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAATC
ACGAGCAGGGAAGCTGCATCCAATACTCGCAAACCGGCACCTCGATACAC
GCATCAAATTGACGGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTAC
GCCGGAGAAGTATGGGAAGGAAATAAGAAGGTAGTGAAAGAACTCGAGGC
GGCGCAGATGAAAGCAGCGAAAACCATCCTAGGATGCTCCAGGCGCACAA
GTAATGCAGCCGTGAGGGCAGAATTGGGGATCCAATCCCTACGGTCGGGA
AGAGACGCGAGGAAGCTGACCTGGCAGTATCGCATGTGCGGGATGGGAGA
GGAGAGGTTGCCGAGGATTGTATGGGAGGCGAAGTGGGCAAACAAAAAGA
GGGGTAGACAACCCACGGAATGGGTCAAGGTTGTAGAGGACGTATGGAAG
GGGCTCGACATCGACGAAGATGAAACGCTGGAAACGGAGGGTCTACAGGG
GTTCAAGGAGAAGATATCTGTTGCTTGTGCCGAGAGAGAAGAACAGAATC
TGAGGAAAGAATCCAAGGATAAGGAGGGTCTAGAAGTGTACGGAATGTTG
AAGGAAGGAATAGGGTTCAAGGACTACCTACATGGACCAATGGATGCAGG
AACAAAGCTTAAGGTCAAATTCAGGACCGGGGACATAGGCCTTCGAGAAC
GTCGACGAAGACATAGGACGGTAGACGAGGAAGACGACGAGTTCACAGTG
ATTGCGGGTTCGAATGCGAAGACCGTGTTCATGTAG