EsuBft528_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft528_2a-0001
Unique NameEsuBft528_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:50023..52720 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft528_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Length174
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft528_2aEsuBft528_2aEctocarpus subulatus male Bft15bgeneScaffold_195 50023..52720 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_2a-0001-exonagat-exon-78251Ectocarpus subulatus male Bft15bexonScaffold_195 50023..50419 -
EsuBft528_2a-0001-exonagat-exon-78250Ectocarpus subulatus male Bft15bexonScaffold_195 50561..51373 -
EsuBft528_2a-0001-exonEsuBft528_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 51846..52303 -
EsuBft528_2a-0001-exonagat-exon-78252Ectocarpus subulatus male Bft15bexonScaffold_195 52649..52720 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_2a-0001-cdsEsuBft528_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 50023..50419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_2a-0001EsuBft528_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 50023..52720 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft528_2a-0001 ID=EsuBft528_2a-0001|Name=EsuBft528_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1740bp|location=Sequence derived from alignment at Scaffold_195:50023..52720- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGCGGGTAGTCCCGGCGTGCCCATTCCCACGCGCGCCCGTGGGGC
AGCGGCGGGGCCCTACTCCACCGTGGATGCTGGGGAGTGGTTCCGCGACC
TCGACCTCCGCCACAGCCAAGTCCTGGCTGTGTTTCCTTCCACACCGTGT
TCCCTGTCCGCCGAGGAGCGGGAATGGGCCGCGGGTGCTAAGCCGGCCCC
AACATCGCCGCCGCCATGGGCCGACGTTACCGCCGACCTCTTGCGCGAGC
CCGCCAGGAGCGTCCCTTGGCGCGCCCCAGCCTGGGACGCGGGCGTGGGC
GGCGGGGCGTCCGTGTCAGGGATTGAGCGGCAGCATACCTGCTTCTGGGA
GCGGGTCATTCTCAAAGACAATCCTCACCGGCGCCGTTTGGTGTCCTACC
TGCGGGAAGGGGTAGACCTCCGGGACTTCCTTCGGGAGCCCTACCGCGGC
CCATCCGGTGGTCTGCCGTATAGTCCGGACCGCTTCCCGGGGGCTATTTT
CTCCAACCGCGTCCCCTCCAAGTTCGCAAGGGCCTACTGGCGCGGGTACA
ATGGACCGCCGGGCGAAGCCACCCACCGCGGAATGCTGGTGTCCTTCCTC
TGCCGCCGCTTCCTGTCCCTACACAAGTGCGACCTCCGGCCCACTACGGT
GCAGCAATATCTCGGTATCCTGTGTGATTCCGGCATGGCCTCCTTCCACA
TCCCCCAGAAGCAGCTCGACAAGTTACACGCTCTGATCCGCGCCGCCCTT
GATGACGGATGGCTATCGTTCCGTACCCTGCAGCGTATCGCGGGAGAATG
CATGAGCATGACGGTGCCGATTCGCCCGGCGCCCCTGTGGACCCACGCCC
TGTTCCAGGCCATCATGGCGACGGATGAGTCCGGCGTGAGCGGAGTCCAC
CTCCGCCGGGACAAGGATGCCGACTTGCGGGGAGAGCTCCGACACTGGTT
GGGGGTCGCGTCTACAACTCATGAGGGGCCGTGGCAGCGAGCTCGTCACT
TCAAGGCTGCCCTCACCGGAGGCGCTCCGGATGCGTCGTCGGTGGGGGGG
GGCGGCATCGTCTACGTCGAGGACGGGCCTTTCAGGGCGGGGGTGGTTTT
CCCGCCAGATCGGCTCTCGAAACACATCAACCAGAAGGAGATGTACGCCT
TGTATCACATGCTACGGCAGTACTGCGAGCGCCACCCGAATGCCTTACGG
CGTGCCCAAGTCCTCATCAACGTGGATAATCCGTCAGCAGTCGGCGCATT
CGCCCGAGGGCGCGCCAAGAACTGCGAAACCCACGCCCTGCTAGTTCAGC
TGTTTGACCTGCAAGTCCAGTGCGGTTTCCTCTTGTCCCTCAACGCGTCG
GCCCAGCGTTCGCCGGCCTCCGGCTCCCCTTTGCCGTTTTTCTCGCACTT
CGACTGCCCGGGTGCTGCCGGGGTGGATGTGCTAGCGCGAGACGTTGCCG
TAGCCCCTGGAACGGTAGAAGAGGCGTTTGGTTTCTGTTTCCCGCCGCTT
GTGATGGTCGGCCACGTGATTCAGCATCTCGCCGAGTGCAAAGCTCGCGC
GGTGGCCGTTGTCCCCGATAGGCAGGAGTACTGGTTCCCGTTGGTGCGCC
ACGCCGCGGTGCACCGTCGAGAGGTAGCCCCGGCGGCCGCGTCGGGAGTT
TTTCGTTGGCCTTGTGCGGATGATTCACTGCGGCCATGGCAGTATAGTTT
TTCGGCGATGACGGCGTATGAAGACGACTTTCGGCAGTGA
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protein sequence of EsuBft528_2a-0001

>EsuBft528_2 ID=EsuBft528_2|Name=EsuBft528_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=579bp
MLAGSPGVPIPTRARGAAAGPYSTVDAGEWFRDLDLRHSQVLAVFPSTPC
SLSAEEREWAAGAKPAPTSPPPWADVTADLLREPARSVPWRAPAWDAGVG
GGASVSGIERQHTCFWERVILKDNPHRRRLVSYLREGVDLRDFLREPYRG
PSGGLPYSPDRFPGAIFSNRVPSKFARAYWRGYNGPPGEATHRGMLVSFL
CRRFLSLHKCDLRPTTVQQYLGILCDSGMASFHIPQKQLDKLHALIRAAL
DDGWLSFRTLQRIAGECMSMTVPIRPAPLWTHALFQAIMATDESGVSGVH
LRRDKDADLRGELRHWLGVASTTHEGPWQRARHFKAALTGGAPDASSVGG
GGIVYVEDGPFRAGVVFPPDRLSKHINQKEMYALYHMLRQYCERHPNALR
RAQVLINVDNPSAVGAFARGRAKNCETHALLVQLFDLQVQCGFLLSLNAS
AQRSPASGSPLPFFSHFDCPGAAGVDVLARDVAVAPGTVEEAFGFCFPPL
VMVGHVIQHLAECKARAVAVVPDRQEYWFPLVRHAAVHRREVAPAAASGV
FRWPCADDSLRPWQYSFSAMTAYEDDFRQ
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mRNA from alignment at Scaffold_195:50023..52720-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft528_2a-0001 ID=EsuBft528_2a-0001|Name=EsuBft528_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2698bp|location=Sequence derived from alignment at Scaffold_195:50023..52720- (Ectocarpus subulatus male Bft15b)
ATGCTCGCGGGTAGTCCCGGCGTGCCCATTCCCACGCGCGCCCGTGGGGC
AGCGGCGGGGCCCTACTCCACCGTTACAGACATGATGTTTTATTACCTTT
CGCTCCTAGTAGAAAACCCTAGATTTGTCTGCCTCGCGTCTAGCCCTGGG
TCGCCGCCCCGATGCTGCGTCCCGTCCCCTCGTCGCCATCCCTGCCATTT
CTTGTAGTGGGCACGGTTGACGTTGCCTAACCAAGAGGAGCCGACGCGCT
GGCCGTCCCTCCCCTACCGCTTGTATCGCCAGTACCTCGGGTTGTTTCCC
GCACGTGCTGCCGCGTGCCGTTGCAGCGCGGTGGTACAGTCGCGAAATCT
CCCGGTTGTCGCCGATGAGGTGGTGCGTTCCTCACCCGGCCTTCGTTTGC
TGCCCGCCCCCGAGTAGGTGGATGCTGGGGAGTGGTTCCGCGACCTCGAC
CTCCGCCACAGCCAAGTCCTGGCTGTGTTTCCTTCCACACCGTGTTCCCT
GTCCGCCGAGGAGCGGGAATGGGCCGCGGGTGCTAAGCCGGCCCCAACAT
CGCCGCCGCCATGGGCCGACGTTACCGCCGACCTCTTGCGCGAGCCCGCC
AGGAGCGTCCCTTGGCGCGCCCCAGCCTGGGACGCGGGCGTGGGCGGCGG
GGCGTCCGTGTCAGGGATTGAGCGGCAGCATACCTGCTTCTGGGAGCGGG
TCATTCTCAAAGACAATCCTCACCGGCGCCGTTTGGTGTCCTACCTGCGG
GAAGGGGTAGACCTCCGGGACTTCCTTCGGGAGCCCTACCGCGGCCCATC
CGGTGGTCTGCCGTATAGTCCGGACCGCTTCCCGGGGGCTATTTTCTCCA
ACCGCGTCCCCTCCAAGTTCGCAAGGTTCGTCACGCGCGAAGTGCAAACG
ATTGTGGACCGCGGTTGCGTCGTCAAGTGGGACGACGTGCGCGCCCCGGG
CGGTCCGACCCGGTCGCGCCTGGTCATGGCGTTATCGGTGGAGGAAACCA
AACCGCGCTTGATGTACGATGGTCTGCCGCTCAACGCACGTCTTGACCCC
CCGGCTTTCTCCATGGATACAGTGGCCCGGGTAGCTCACATCGCTGCGGA
AGGGCCTCCCTCGACGATTCGAGTGCTTTCCACCACATCTTTATCCACCC
CTCGTCTTGGCCGTTGCTCGGTTTCGAACACGGCGGCGTGCTCTACTGCT
GGTCTGTGCTCCCCTGTGGGCTCTCCGTGAGCCCGTGGTGTTACCACGTG
CTGAGCGACGCCAAGGCGGCCTTCCTTCACTCCTTGCGAATTCCCAGCTC
TGGCGTTCATGGAAGACTCGTTGCAGAGCAATCCGGTTGCCACGCAGGGC
CTACTGGCGCGGGTACAATGGACCGCCGGGCGAAGCCACCCACCGCGGAA
TGCTGGTGTCCTTCCTCTGCCGCCGCTTCCTGTCCCTACACAAGTGCGAC
CTCCGGCCCACTACGGTGCAGCAATATCTCGGTATCCTGTGTGATTCCGG
CATGGCCTCCTTCCACATCCCCCAGAAGCAGCTCGACAAGTTACACGCTC
TGATCCGCGCCGCCCTTGATGACGGATGGCTATCGTTCCGTACCCTGCAG
CGTATCGCGGGAGAATGCATGAGCATGACGGTGCCGATTCGCCCGGCGCC
CCTGTGGACCCACGCCCTGTTCCAGGCCATCATGGCGACGGATGAGTCCG
GCGTGAGCGGAGTCCACCTCCGCCGGGACAAGGATGCCGACTTGCGGGGA
GAGCTCCGACACTGGTTGGGGGTCGCGTCTACAACTCATGAGGGGCCGTG
GCAGCGAGCTCGTCACTTCAAGGCTGCCCTCACCGGAGGCGCTCCGGATG
CGTCGTCGGTGGGGGGGGGCGGCATCGTCTACGTCGAGGACGGGCCTTTC
AGGGCGGGGGTGGTTTTCCCGCCAGATCGGCTCTCGAAACACATCAACCA
GAAGGAGATGTACGCCTTGTATCACATGCTACGGCAGTACTGCGAGCGCC
ACCCGAATGCCTTACGGCGTGCCCAAGTCCTCATCAACGTGGATAATCCG
TCAGCAGTCGGCGCATTCGCCCGAGGGCGCGCCAAGAACTGCGAAACCCA
CGCCCTGCTAGTTCAGCTGTTTGACCTGCAAGTCCAGTGCGGTTTCCTCT
TGTCCCTCAAGTGAGTCCCCACCGGCCAAAATGGGGTTGCAGACGCCATC
TCGCGGCCGTCCCGGGACTCGATCGTCCGTCTAGCTCCTGACGCCTTCCG
CGTCTTGTGGGGGGCTCTTGGCCCGTTCAACGTAGATCTGATGGCGTGTA
GCGCGTCGGCCCAGCGTTCGCCGGCCTCCGGCTCCCCTTTGCCGTTTTTC
TCGCACTTCGACTGCCCGGGTGCTGCCGGGGTGGATGTGCTAGCGCGAGA
CGTTGCCGTAGCCCCTGGAACGGTAGAAGAGGCGTTTGGTTTCTGTTTCC
CGCCGCTTGTGATGGTCGGCCACGTGATTCAGCATCTCGCCGAGTGCAAA
GCTCGCGCGGTGGCCGTTGTCCCCGATAGGCAGGAGTACTGGTTCCCGTT
GGTGCGCCACGCCGCGGTGCACCGTCGAGAGGTAGCCCCGGCGGCCGCGT
CGGGAGTTTTTCGTTGGCCTTGTGCGGATGATTCACTGCGGCCATGGCAG
TATAGTTTTTCGGCGATGACGGCGTATGAAGACGACTTTCGGCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_195:50023..52720-

>EsuBft528_2a-0001 ID=EsuBft528_2a-0001|Name=EsuBft528_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1740bp|location=Sequence derived from alignment at Scaffold_195:50023..52720- (Ectocarpus subulatus male Bft15b)
ATGCTCGCGGGTAGTCCCGGCGTGCCCATTCCCACGCGCGCCCGTGGGGC
AGCGGCGGGGCCCTACTCCACCGTGGATGCTGGGGAGTGGTTCCGCGACC
TCGACCTCCGCCACAGCCAAGTCCTGGCTGTGTTTCCTTCCACACCGTGT
TCCCTGTCCGCCGAGGAGCGGGAATGGGCCGCGGGTGCTAAGCCGGCCCC
AACATCGCCGCCGCCATGGGCCGACGTTACCGCCGACCTCTTGCGCGAGC
CCGCCAGGAGCGTCCCTTGGCGCGCCCCAGCCTGGGACGCGGGCGTGGGC
GGCGGGGCGTCCGTGTCAGGGATTGAGCGGCAGCATACCTGCTTCTGGGA
GCGGGTCATTCTCAAAGACAATCCTCACCGGCGCCGTTTGGTGTCCTACC
TGCGGGAAGGGGTAGACCTCCGGGACTTCCTTCGGGAGCCCTACCGCGGC
CCATCCGGTGGTCTGCCGTATAGTCCGGACCGCTTCCCGGGGGCTATTTT
CTCCAACCGCGTCCCCTCCAAGTTCGCAAGGGCCTACTGGCGCGGGTACA
ATGGACCGCCGGGCGAAGCCACCCACCGCGGAATGCTGGTGTCCTTCCTC
TGCCGCCGCTTCCTGTCCCTACACAAGTGCGACCTCCGGCCCACTACGGT
GCAGCAATATCTCGGTATCCTGTGTGATTCCGGCATGGCCTCCTTCCACA
TCCCCCAGAAGCAGCTCGACAAGTTACACGCTCTGATCCGCGCCGCCCTT
GATGACGGATGGCTATCGTTCCGTACCCTGCAGCGTATCGCGGGAGAATG
CATGAGCATGACGGTGCCGATTCGCCCGGCGCCCCTGTGGACCCACGCCC
TGTTCCAGGCCATCATGGCGACGGATGAGTCCGGCGTGAGCGGAGTCCAC
CTCCGCCGGGACAAGGATGCCGACTTGCGGGGAGAGCTCCGACACTGGTT
GGGGGTCGCGTCTACAACTCATGAGGGGCCGTGGCAGCGAGCTCGTCACT
TCAAGGCTGCCCTCACCGGAGGCGCTCCGGATGCGTCGTCGGTGGGGGGG
GGCGGCATCGTCTACGTCGAGGACGGGCCTTTCAGGGCGGGGGTGGTTTT
CCCGCCAGATCGGCTCTCGAAACACATCAACCAGAAGGAGATGTACGCCT
TGTATCACATGCTACGGCAGTACTGCGAGCGCCACCCGAATGCCTTACGG
CGTGCCCAAGTCCTCATCAACGTGGATAATCCGTCAGCAGTCGGCGCATT
CGCCCGAGGGCGCGCCAAGAACTGCGAAACCCACGCCCTGCTAGTTCAGC
TGTTTGACCTGCAAGTCCAGTGCGGTTTCCTCTTGTCCCTCAACGCGTCG
GCCCAGCGTTCGCCGGCCTCCGGCTCCCCTTTGCCGTTTTTCTCGCACTT
CGACTGCCCGGGTGCTGCCGGGGTGGATGTGCTAGCGCGAGACGTTGCCG
TAGCCCCTGGAACGGTAGAAGAGGCGTTTGGTTTCTGTTTCCCGCCGCTT
GTGATGGTCGGCCACGTGATTCAGCATCTCGCCGAGTGCAAAGCTCGCGC
GGTGGCCGTTGTCCCCGATAGGCAGGAGTACTGGTTCCCGTTGGTGCGCC
ACGCCGCGGTGCACCGTCGAGAGGTAGCCCCGGCGGCCGCGTCGGGAGTT
TTTCGTTGGCCTTGTGCGGATGATTCACTGCGGCCATGGCAGTATAGTTT
TTCGGCGATGACGGCGTATGAAGACGACTTTCGGCAGTGA
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