EsuBft528_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft528_11a-0001
Unique NameEsuBft528_11a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:150235..151892 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDG8
ProteomeIdEsuBft528_11
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsIPR016040
Protein domainsSignalP-noTM
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE_H_REGION
Protein domainsSIGNAL_PEPTIDE
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Max annot lvl2759|Eukaryota
Length67
Hectar predicted targeting categorysignal peptide
Evalue4.04e-95
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Ec32 ortholog descriptionNAD(P)-binding domain
Ec32 orthologEc-15_000670.1
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft528_11aEsuBft528_11aEctocarpus subulatus male Bft15bgeneScaffold_195 150235..151892 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_11a-0001-exonagat-exon-78315Ectocarpus subulatus male Bft15bexonScaffold_195 150235..150368 -
EsuBft528_11a-0001-exonEsuBft528_11a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 150844..151005 -
EsuBft528_11a-0001-exonagat-exon-78314Ectocarpus subulatus male Bft15bexonScaffold_195 151516..151892 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_11a-0001-cdsEsuBft528_11a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 150235..150368 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_11a-0001-exonagat-five_prime_utr-11312Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_195 151844..151892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_11a-0001EsuBft528_11Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 150235..151843 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft528_11a-0001 ID=EsuBft528_11a-0001|Name=EsuBft528_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_195:150235..151892- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCGCACACGCGTGAGAAAGGGATACACAGCGGAGATTGATTGGGAGAAA
TGATGTCTGCATGTGGGCGTCAGTGGCTTCTCGGCCTGATCTTGGCGGCG
GGTTCTTCCATCAAGCCGTCGTCATCTTGGGTCATCGGCCCAACGGCAGC
ACGGTCAGATGTGACGCATCGACACAGAGCTACCGTAACGGGCAGGCGCA
GTGGCAGCAGCATCACAACGATGCGAGCGACTCCTTCCCCCGGTGGCGAT
GACGATACTGCTGGCACTCCCGCGTCGATGTCACGCGGAGAATGGCTGCG
AGTCGGTGCCAGCCTTGCAGCAATGGCGCCGGTGTTTGCCCTCGGCAAGG
AAGACGCGTCGGCAGCAACATCATCAGTCTTCAACGCCTGCCTGTCAGAT
GTGACCGTGCTGGGAGCTGGTGGGAAGACCGGACGGGAGTGCGTGGAGTA
CCTCGCCTCGAAAGGGACAGGCGAGTCGCACATTTTGCTAATATTGTGCT
ACGAATCTCAGTGCGAGCGATGCAGCACTCCGACCGTAGGGGTGAGGGCG
GTGGCGAGGAGCTTGACCAACAAAGAAGGGGAGCCGTTAGCCTTTACGAC
AACCAAGGGAATTACGATCGAGACGGCGGACGTCACTGTGCCCAGCTCGC
TGCCCGGGGTCATCAAAGGGTGA
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protein sequence of EsuBft528_11a-0001

>EsuBft528_11 ID=EsuBft528_11|Name=EsuBft528_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=207bp
MMSACGRQWLLGLILAAGSSIKPSSSWVIGPTAARSDVTHRHRATVTGRR
SGSSITTMRATPSPGGDDDTAGTPASMSRGEWLRVGASLAAMAPVFALGK
EDASAATSSVFNACLSDVTVLGAGGKTGRECVEYLASKGTGESHILLILC
YESQCERCSTPTVGVRAVARSLTNKEGEPLAFTTTKGITIETADVTVPSS
LPGVIKG
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mRNA from alignment at Scaffold_195:150235..151892-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft528_11a-0001 ID=EsuBft528_11a-0001|Name=EsuBft528_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1658bp|location=Sequence derived from alignment at Scaffold_195:150235..151892- (Ectocarpus subulatus male Bft15b)
CCCGCACACGCGTGAGAAAGGGATACACAGCGGAGATTGATTGGGAGAAA
TGATGTCTGCATGTGGGCGTCAGTGGCTTCTCGGCCTGATCTTGGCGGCG
GGTTCTTCCATCAAGCCGTCGTCATCTTGGGTCATCGGCCCAACGGCAGC
ACGGTCAGATGTGACGCATCGACACAGAGCTACCGTAACGGGCAGGCGCA
GTGGCAGCAGCATCACAACGATGCGAGCGACTCCTTCCCCCGGTGGCGAT
GACGATACTGCTGGCACTCCCGCGTCGATGTCACGCGGAGAATGGCTGCG
AGTCGGTGCCAGCCTTGCAGCAATGGCGCCGGTGTTTGCCCTCGGCAAGG
AAGACGCGTCGGCAGCAACATCATCAGGTACGCACCAACATCGCCGTCCG
TGCACATGTAGTCTACACAAGTGATACCGCCAGCATCGAAAACGGGTGCT
AAGGCAGTACGTAACCAAAGGCCTGTTGCCCAACATCTTTCTGTTTGCAG
TCCATCCAAAGATGAACGGGTAGAACTACAGTATCAACAAACCATATCTT
GACGGGACATGCACATCGTTGCCTGTTTGCTAGTTTCTCCTCGACCCTCT
CTGTAAACTTCAAAGTCAGCCCGCCCAGGCAGGCAAGCCAAACGGAGTTT
GAGCCCTTTCGTCGGCACACAGCAGGATCGAAGTTGTAGATATGAATGCT
GTTGGCTTGAGGAAATGGGTGCTAGCCGATCGGGGTCGACCTTGCTACCT
TCGGTGGTCCCACGTTTCCCCCGTCTCCATGCCCCGGACATTAACAGATT
GCCGATGAGTTTCTGTGGTGGCCTTTGAAGCGTTCGCTAGTTTGTCTCCC
GTCACTTCAACGACCAAATGTGTACTGTATGTGTTAGTCTTCAACGCCTG
CCTGTCAGATGTGACCGTGCTGGGAGCTGGTGGGAAGACCGGACGGGAGT
GCGTGGAGTACCTCGCCTCGAAAGGGACAGGCGAGTCGCACATTTTGCTA
ATATTGTGCTACGAATCTCAGTGCGAGCGATGCAGCACTCCGACCGTAGG
TTGTATGAAGTACAGCACTCCCTGATGAACCAACGTTCAAACCTCATTTA
TTCCACGACGAAGAGGATCCCGAAATTACGTGAGAGATTTTCGGAAAACT
CTTGAGAATACGGTTCCAACGCCGCCTTATTGGGGGCACCTTCACTGATG
TTTTCCCTGCCGAGTATTCGAGCTTTGAAAATCGGTCCAGGGGGTGTGAT
ATCTCATGCAACGTACGGTATACAGGTGTGCTCAATTTTCTGTGCGGTTC
CGCAGATACAGCAGTTGCTCTTCTTGTGATAAACGTTGTGCAAGTTGGGG
TTCGTCGGTGAGCATCCGTAGCTGTTATCTTGTTGAGGAGGTTGTGTGAT
ACGGAAAACAGGATGCAGTCCTACATGGCGGAAGTGCTGTCGACCCAAAC
CCGCCGCCATTACGAACATGCGGAATTTTGATTGCCGTATCGTTGGTGTT
GATGTGTACAATTGGTGTATGCAGGGGTGAGGGCGGTGGCGAGGAGCTTG
ACCAACAAAGAAGGGGAGCCGTTAGCCTTTACGACAACCAAGGGAATTAC
GATCGAGACGGCGGACGTCACTGTGCCCAGCTCGCTGCCCGGGGTCATCA
AAGGGTGA
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Coding sequence (CDS) from alignment at Scaffold_195:150235..151892-

>EsuBft528_11a-0001 ID=EsuBft528_11a-0001|Name=EsuBft528_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=624bp|location=Sequence derived from alignment at Scaffold_195:150235..151892- (Ectocarpus subulatus male Bft15b)
ATGATGTCTGCATGTGGGCGTCAGTGGCTTCTCGGCCTGATCTTGGCGGC
GGGTTCTTCCATCAAGCCGTCGTCATCTTGGGTCATCGGCCCAACGGCAG
CACGGTCAGATGTGACGCATCGACACAGAGCTACCGTAACGGGCAGGCGC
AGTGGCAGCAGCATCACAACGATGCGAGCGACTCCTTCCCCCGGTGGCGA
TGACGATACTGCTGGCACTCCCGCGTCGATGTCACGCGGAGAATGGCTGC
GAGTCGGTGCCAGCCTTGCAGCAATGGCGCCGGTGTTTGCCCTCGGCAAG
GAAGACGCGTCGGCAGCAACATCATCAGTCTTCAACGCCTGCCTGTCAGA
TGTGACCGTGCTGGGAGCTGGTGGGAAGACCGGACGGGAGTGCGTGGAGT
ACCTCGCCTCGAAAGGGACAGGCGAGTCGCACATTTTGCTAATATTGTGC
TACGAATCTCAGTGCGAGCGATGCAGCACTCCGACCGTAGGGGTGAGGGC
GGTGGCGAGGAGCTTGACCAACAAAGAAGGGGAGCCGTTAGCCTTTACGA
CAACCAAGGGAATTACGATCGAGACGGCGGACGTCACTGTGCCCAGCTCG
CTGCCCGGGGTCATCAAAGGGTGA
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