EsuBft528_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft528_10a-0001
Unique NameEsuBft528_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_195contigScaffold_195:145920..148582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LDG8
ProteomeIdEsuBft528_10
Protein domainsIPR016040
Protein domainsPF13460
Protein domainsSSF51735
Ownerapollo_admin@sb-roscoff.fr
NoteUncharacterized protein At2g34460. chloroplastic OS:Arabidopsis thaliana GN:At2g34460 PE:2 SV:1 [Automatic annotation]
Nb exon8
Max annot lvl2759|Eukaryota
Length586
Hectar predicted targeting categoryother localisation
Evalue5.93e-89
EggNOG OGsCOG0702@1|root,KOG1203@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondivinyl chlorophyllide a 8-vinyl-reductase activity
COG categoryGM
Cross References
External references for this mRNA
DatabaseAccession
GO0044434
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft528_10aEsuBft528_10aEctocarpus subulatus male Bft15bgeneScaffold_195 145920..148582 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_10a-0001EsuBft528_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_195 145942..148582 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_10a-0001-exonagat-exon-78310Ectocarpus subulatus male Bft15bexonScaffold_195 145920..146026 -
EsuBft528_10a-0001-exonagat-exon-78307Ectocarpus subulatus male Bft15bexonScaffold_195 146215..146270 -
EsuBft528_10a-0001-exonagat-exon-78308Ectocarpus subulatus male Bft15bexonScaffold_195 146829..146935 -
EsuBft528_10a-0001-exonagat-exon-78311Ectocarpus subulatus male Bft15bexonScaffold_195 147115..147122 -
EsuBft528_10a-0001-exonagat-exon-78313Ectocarpus subulatus male Bft15bexonScaffold_195 147245..147362 -
EsuBft528_10a-0001-exonEsuBft528_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_195 147636..147669 -
EsuBft528_10a-0001-exonagat-exon-78312Ectocarpus subulatus male Bft15bexonScaffold_195 147979..147990 -
EsuBft528_10a-0001-exonagat-exon-78309Ectocarpus subulatus male Bft15bexonScaffold_195 148439..148582 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_10a-0001-exonagat-three_prime_utr-17810Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_195 145920..145941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft528_10a-0001-cdsEsuBft528_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_195 145942..146026 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft528_10a-0001 ID=EsuBft528_10a-0001|Name=EsuBft528_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=586bp|location=Sequence derived from alignment at Scaffold_195:145920..148582- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACGTACGCATGTGGCAGGTGTTGTGAACGTCGCTAAGGCTTGCCT
GGAAGCGAAGGTGCCGCGGCTGGTTGTGGTATCTTCAGGCGGCGTGGCTA
CCCCGGATTCGTCCATCTACAAGTTCCTTAACCTCTTCGGAGAGGGGGAG
GATCAGGACGTATGCCACTACACCATCGTCAGGCCCGGTGGCCTGACGTT
AGACCCTCCAAGGGGTGTCACGGCCATCGAGCTCAACCAGGGGGACACTA
AGAGCGGCCGCATCGCGCGGGCAGACGTGGCGCGCGTTTGCGTCGAGTCC
ATCTACAGACTGCCAGTCGTGACCCCTGTGTTGAAACCAAATTGCCACGA
ACCGCTTCGTCTTCACGTCATGTCGATTACCAGCCGGAACGCGGAGGACT
GCACCTTCGAGTGCTACTACAAGGATACTGCCAAACCGCTTGCGGCCGTG
GGCGTTTCCAACATCCTGAAGCAGAAAACGGACGACACCGCAAAGTCTTT
CGGTACCGAGAGCACCGGCGACTCTTGGGACGCCCTCTTTTCCGGGTTGA
AACGCGACGCATAGAAACCCGGAAAAAGCAATTGCT
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protein sequence of EsuBft528_10a-0001

>EsuBft528_10 ID=EsuBft528_10|Name=EsuBft528_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MQRTHVAGVVNVAKACLEAKVPRLVVVSSGGVATPDSSIYKFLNLFGEGE
DQDVCHYTIVRPGGLTLDPPRGVTAIELNQGDTKSGRIARADVARVCVES
IYRLPVVTPVLKPNCHEPLRLHVMSITSRNAEDCTFECYYKDTAKPLAAV
GVSNILKQKTDDTAKSFGTESTGDSWDALFSGLKRDA
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mRNA from alignment at Scaffold_195:145920..148582-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft528_10a-0001 ID=EsuBft528_10a-0001|Name=EsuBft528_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2663bp|location=Sequence derived from alignment at Scaffold_195:145920..148582- (Ectocarpus subulatus male Bft15b)
ATGCAACGTACGCATGTGGCAGGTGTTGTGAACGTCGCTAAGGCTTGCCT
GGAAGCGAAGGTGCCGCGGCTGGTTGTGGTATCTTCAGGCGGCGTGGCTA
CCCCGGATTCGTCCATCTACAAGTTCCTTAACCTCTTCGGAGAGGTACTT
TTTTTTTTTGCAGTCCTGCGCAACGGAAAATATGACCAGCAGCTTCGTAC
CCGCTCGTTGCAGAGAGCATGGCCTGTTTCTGCTTTGTCCTTCCCTTGAT
TCCGAAAACTCCCCCCAAAAAGTGCTATTTAGTAAACACGTTGATCACAT
CGCAAATTTACCAAGGGTGGGTTACGTTCCGTGAGGCTGTCTTGATGATC
ATGAGTATGTTTTGGTAACGTTAAGGCGCGCACAAGACCAACATGGCGGC
AGCAGTGTCAACTGCTGTGCAGCGAGTACAGGCCAGCGTGCGGAGTCTAA
CCCTCCGTACCGCTGCGCGTTATTGCGCTTCAACGACTCGGGCGTGTGGA
ACGGGTTTTCTGCACCGGACTGGGCCTCCACGTTCCACTTTCGCCGCCGC
GGAAACGAACCGAATATACAGATCATGTCGTGGAAGATACAGGGGGAGGA
TCAGGTACGCCTCTCTTGTGCATCAAGCATGCTGACTTCAAGCCTTTATT
CACCGCCGTAGCGCTGGCTGGCCGTCATCTCTTCCTTTTCACATTTGGCT
GTCACGCTTGTTTCGGTTTGGGCTGGGTCGCTTTCTGACCTAAAACCGAT
TGTTGCAGGAATAATCGGCGTTGGTCAAGTCGTGCATAGTGTGGTGTTGG
AGCACGAATAGTTGCGGCCTCCTGATCTCCGCTTGTGAGAATCCTAACAC
GCACTGCCGTTTCATGCGATATCCACTTGCCACGAGCAGCTGCGGTCCAT
GTACGCCGCGCAGGACGTATGCCACTACACCATCGTCAGGCCCGGTGGTG
AGAGAACTCCGTCCTACCGTTGAGCCTCTCTGATTGACCTATCATATTGA
TACACTGTGATGGGTGTCGTCCTCGCTGTCTGTTGCTTCTGTGTCAGCCG
AGCCAGACAGTTGTGTAAATTTTCACTCCCTGTTATGCTCGCCGTGAGAG
GTTAGTCTGCAGGGTTTGTTGCTTAGATTGCGCCTTCCTATTGAGTGTGC
TTCAGTGGAGTGAAGCTCGACCACAGCCTCAACGCCTGTCGCTGCTGCTG
CGTATCGATCAACGCCTCAGGCCTGACGTTAGACCCTCCAAGGGGTGTCA
CGGCCATCGAGCTCAACCAGGGGGACACTAAGAGCGGCCGCATCGCGCGG
GCAGACGTGGCGCGCGTTTGCGTCGAGTCCATCTACAGGTGCTGTTTGAT
ATTCGGCACGCCACTCTTGACTACATTCAGCGCTAAGAAGACGCCAGAAA
TCGGCAGTCTCCCATGAACATTAACATCTTTTGTTTTCATTGATTGACCC
GTTCAGGCAGACTGCCAGGTACGTGTCGCGGCAAGTTCAAGGACAGAACC
GGGCCGAAAATCTGGATCATCGGTGCCGTCCTATCGTTGGTAGATTTCGG
ACTGATTGGCACGCGCGGCTTAGAGTTGCTGGTGTTGTGGACCGTCTGCG
CTCGTCTTGCAGTAGGGCTATCGAGTCTTTGTAGCAGTTTCTTGCAGTCG
TGACCCCTGTGTTGAAACCAAATTGCCACGAACCGCTTCGTCTTCACGTC
ATGTCGATTACCAGCCGGAACGCGGAGGACTGCACCTTCGAGTGCTACTA
CAAGGTGAGAAGTTGGTGTTGGTCCCACTCTTCACCTTTGACATTTTTTT
CCAGTCCAGGAATGGAAACCTTTCGCCACAAGCTTCCCGCTCATTCGCCG
TGGATGATACCGAGAATTAAGTTCGGCCCCTACCTCTGTTGTTGAAAGCA
GCGGGTGCATCCTGTGCGCATGCGCGGATTGTTTTTGCCCATTGAACCTA
TGGTGGCCGTTCTAGGTGGTAGCACGTGATTTTTCTTGCCTGACCATCAG
CTAGTCTCGTGCGGAAGTCAAGGCAAAGTTGGCAAACCAGCCGACGCATT
CGTATGGGAGAATTAAAGGTGTACTGTTAGAGTGCTGTTAGACGAACGAT
ACCTAAATGCCTTCTGTATGCATCTGAAGTTCATGAGTGCACCACGTCAT
ATCCAGCTGGTTATAATAGCGTGTCTCATCTAACGTGACGCACAACCTTC
CTGTGCTCGAGGCAAAATCTCGTATATTCACCCGTGCACGTGGGTCTTGT
TGAACACGCCGGACTGGTGTCCCCCGGCACTCTTTTGCTTCTCTCCGCTG
TCCCCCTTGCAGGATACTGCCAAACCGCTTGCGGCCGTGGGCGTTTCCAA
CATCCTGAAGCAGAAAACGTAAGTTTCACCGTAGTGGTCATGGTAGCACG
TGGCTCGGGGTTTTCTGCCAGAGTTTGGAAAAAAAATCCTCCGTTGCAAA
CGTTTGCCCTGTGGTACCACAACAACACCCGATACTGCCTTTGTCGCTCC
TACCGCTGCACCCACATCACGACAACGCTCTGCCCGCTTGGCGTCGTTCA
TGACAGGGACGACACCGCAAAGTCTTTCGGTACCGAGAGCACCGGCGACT
CTTGGGACGCCCTCTTTTCCGGGTTGAAACGCGACGCATAGAAACCCGGA
AAAAGCAATTGCT
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Coding sequence (CDS) from alignment at Scaffold_195:145920..148582-

>EsuBft528_10a-0001 ID=EsuBft528_10a-0001|Name=EsuBft528_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_195:145920..148582- (Ectocarpus subulatus male Bft15b)
ATGCAACGTACGCATGTGGCAGGTGTTGTGAACGTCGCTAAGGCTTGCCT
GGAAGCGAAGGTGCCGCGGCTGGTTGTGGTATCTTCAGGCGGCGTGGCTA
CCCCGGATTCGTCCATCTACAAGTTCCTTAACCTCTTCGGAGAGGGGGAG
GATCAGGACGTATGCCACTACACCATCGTCAGGCCCGGTGGCCTGACGTT
AGACCCTCCAAGGGGTGTCACGGCCATCGAGCTCAACCAGGGGGACACTA
AGAGCGGCCGCATCGCGCGGGCAGACGTGGCGCGCGTTTGCGTCGAGTCC
ATCTACAGACTGCCAGTCGTGACCCCTGTGTTGAAACCAAATTGCCACGA
ACCGCTTCGTCTTCACGTCATGTCGATTACCAGCCGGAACGCGGAGGACT
GCACCTTCGAGTGCTACTACAAGGATACTGCCAAACCGCTTGCGGCCGTG
GGCGTTTCCAACATCCTGAAGCAGAAAACGGACGACACCGCAAAGTCTTT
CGGTACCGAGAGCACCGGCGACTCTTGGGACGCCCTCTTTTCCGGGTTGA
AACGCGACGCATAG
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