EsuBft525_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft525_7a-0001
Unique NameEsuBft525_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:655097..659473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft525_7
Protein domainsCoil
Ownerapollo_admin@sb-roscoff.fr
Nb exon5
Length227
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft525_7aEsuBft525_7aEctocarpus subulatus male Bft15bgeneScaffold_129 655097..659473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_7a-0001EsuBft525_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 655639..659473 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_7a-0001-exonEsuBft525_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 655097..656111 -
EsuBft525_7a-0001-exonagat-exon-70624Ectocarpus subulatus male Bft15bexonScaffold_129 657111..657242 -
EsuBft525_7a-0001-exonagat-exon-70626Ectocarpus subulatus male Bft15bexonScaffold_129 658027..658544 -
EsuBft525_7a-0001-exonagat-exon-70623Ectocarpus subulatus male Bft15bexonScaffold_129 658663..658670 -
EsuBft525_7a-0001-exonagat-exon-70625Ectocarpus subulatus male Bft15bexonScaffold_129 658871..659473 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_7a-0001-exonagat-three_prime_utr-17778Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 655097..655638 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_7a-0001-cdsEsuBft525_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 655639..656111 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft525_7a-0001 ID=EsuBft525_7a-0001|Name=EsuBft525_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2276bp|location=Sequence derived from alignment at Scaffold_129:655097..659473- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGGCCAGGAAAAAGAATTGGTGGACTTCGAGCACGAGAAGGACCA
GCAACAAGACCAGGGGCCCCAGCGGTCCTCGGGCGGCTCGGGTAGCTCTT
CGGAGGATGTGGAGGACGAGTCGAGGATCTGGCGCCGCCCCCGGTTCCGT
TTGGCTCGGGTGCAGGCCTTGCTTCAGGATGCGTCTTCGGAGGACCTGTC
TGCTGCCTTTCGTGACGGAGACATCACTCTTCGAGATATTGTGTCAACGT
GTTTGTCGTCCGATGTCCCTCGTCCCGTGCCCCCCTTCGACCTAGATATG
TCGCACGAGGAAATTTCTCGCTTGCCCCCCGATGACTACGACGCATTGCT
CCAACTTAGCGAACACTGGCACGGGCGTTTGACGGAGAATCTTCGCGCGG
AGGCGGAGGCGGTGGCAGAGAAAGCGGCTGCAGAGGAAGCAGCGGCGGCA
GCAGCGGCGAGAGCGGAGGCGGAGCGAGTGGCTCCGGAGCAAGCGGCGGC
GAAGCAAGCGGCGGCGAAGGAAGCGGATGCAGCAGCAACGGCGGCAGCGG
TGGAGGAGAAAGCGGCTGCGGAACAAGCGCAGTTTGAAGAACGTCTTCGC
CAGGGGCACAGGCAGTCGGCGGATATCGCGTTTCTTCATCGCAGCGTCGG
GATGCCCTCTCGCGATGTCACGTTCCACCACCAAGACCAATCCGACGCGG
ACACTGCCTGGGGAGCCTGTCGCCAAGTCGTCCTGGATGCCGTTCGCCCA
ACGCCCATCTCGCAGGTTACCTTCGGCACCCTCTTCAACAAAGGGTTCAT
CAAGAAACTCACGCCCTTCCAGCAGCAAAACGTTTTCAGGCTTGCACATG
CTTTACGACGGGCTACTTTCCGCGATGAACCTCAAGGATCTATCCTGGTC
ACCCCGAGTGGTGGCTTACAGCCGCCTCTCAACCGCGCGGCCTCGACCAC
CGACCAGCGTGATATCACCAGCTCGAACTACGGCAAGGCGACCCAACGGG
ACTCATCTCACTTCAGCCGTGGCTCGGGCGAGGGGCGCAATCACTCGGAG
TTTACGGCACCGGCGTCTTCAACGTCGGATGAGGATTCCACGAGTCACAA
ATCGGCCTCCGGTTGTGGTTCCGGAGACGGTCTCCACCCGTACGTCGCCG
CGGAAGGAGAAGAAGCCGGAGCGCCGTTAGGAGCCGGACCCACAGGTCTC
CGCCAGCGCGTCGTCGCAGCTGGAGCAGGAGCCGGAGCGAGGATCGGAGC
AGGGCTAACAGGGTCTTCCACGGGCGCCAGAGTGTGGAAGGACGCCCTGG
ATGCTGCGGACGGCGCTGCTGCAGAGGCAGACATCATCCATATTCAAGAC
AAGATGGACAAGCTGAAGCCGGAACAACTTGATGGTGTTAACCGTTTGCC
CCTTGGTCCCGATCCTGACGAATTTGCTCGTTTCGCGTCTAGCTGCCAGC
TCGTCGTCGCAGAAATCCTCACCAAAACCGATGTCAAGCGTCAACATAAC
TTCCATTTTACCACCTGGGTCAGCGGATGGCTTCCATTGTTGCGCAAACG
TGTCCGTGCTACTGTCGTTGAAGGTCAACCAAGCAACCGTACCACCATGG
AATTTCTCAATGACATCTTCCAACAGGTAGAAGCTCATCTGCGCAAGGAC
CCAGCGGGGCCCTCGACGCACACATGTTTCATCCAGAAACTGGCGGGCGC
ATGGGGCTTCCAAGACAAGAGCTCCGGGGATTGATCGTCTTCGTAGTTTT
GGAGTGCCCAACGGGGAAACTTTCCGAGAGTACATTCGTCAGTTTAAGGC
TTGACTGAAACTGTCATGGTCTCATCACCCGTTCAAGCATTCGGATGCGC
AAGTGCAAAACAGCTGTTCGGGACTCATGTTGAAGCAGTTTCCGGTTTTG
TCTAGGCAGTTGCGTAAGGTTGAACAGCTCACCATTGAGGCCCCGTGTGG
ACGGCATGACTCTTGCTTGGGCGACATGTGGGACTTGTGGACAAGCGTGT
GATAGTACACACGCCCGATGTGAATGGAGAGAGTTCTTTTCCTGTGTCTT
CGATGAACCTTGGGAATTCGGCTGCTGTTTCGCGTGCGGTAGCTTCATCG
GCGTTGAGTTCGACTGCACCTCCTTTTTTGGAGCAAGGACTCTTCGCTTG
CTGTGATGAGTGTTGACCCTCTACCAAACAATGATCGGGACATCGGGACC
CTTTTTTGCTGCACTATTCACATAGTCTAGACCGTTGGTTTTACGGGGAT
ATGTGTGTGGAGAGTTCCCTAGATTG
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protein sequence of EsuBft525_7a-0001

>EsuBft525_7 ID=EsuBft525_7|Name=EsuBft525_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=577bp
MSGQEKELVDFEHEKDQQQDQGPQRSSGGSGSSSEDVEDESRIWRRPRFR
LARVQALLQDASSEDLSAAFRDGDITLRDIVSTCLSSDVPRPVPPFDLDM
SHEEISRLPPDDYDALLQLSEHWHGRLTENLRAEAEAVAEKAAAEEAAAA
AAARAEAERVAPEQAAAKQAAAKEADAAATAAAVEEKAAAEQAQFEERLR
QGHRQSADIAFLHRSVGMPSRDVTFHHQDQSDADTAWGACRQVVLDAVRP
TPISQVTFGTLFNKGFIKKLTPFQQQNVFRLAHALRRATFRDEPQGSILV
TPSGGLQPPLNRAASTTDQRDITSSNYGKATQRDSSHFSRGSGEGRNHSE
FTAPASSTSDEDSTSHKSASGCGSGDGLHPYVAAEGEEAGAPLGAGPTGL
RQRVVAAGAGAGARIGAGLTGSSTGARVWKDALDAADGAAAEADIIHIQD
KMDKLKPEQLDGVNRLPLGPDPDEFARFASSCQLVVAEILTKTDVKRQHN
FHFTTWVSGWLPLLRKRVRATVVEGQPSNRTTMEFLNDIFQQVEAHLRKD
PAGPSTHTCFIQKLAGAWGFQDKSSGD
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mRNA from alignment at Scaffold_129:655097..659473-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft525_7a-0001 ID=EsuBft525_7a-0001|Name=EsuBft525_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4377bp|location=Sequence derived from alignment at Scaffold_129:655097..659473- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCCAGGAAAAAGAATTGGTGGACTTCGAGCACGAGAAGGACCA GCAACAAGACCAGGGGCCCCAGCGGTCCTCGGGCGGCTCGGGTAGCTCTT CGGAGGATGTGGAGGACGAGTCGAGGATCTGGCGCCGCCCCCGGTTCCGT TTGGCTCGGGTGCAGGCCTTGCTTCAGGATGCGTCTTCGGAGGACCTGTC TGCTGCCTTTCGTGACGGAGACATCACTCTTCGAGATATTGTGTCAACGT GTTTGTCGTCCGATGTCCCTCGTCCCGTGCCCCCCTTCGACCTAGATATG TCGCACGAGGAAATTTCTCGCTTGCCCCCCGATGACTACGACGCATTGCT CCAACTTAGCGAACACTGGCACGGGCGTTTGACGGAGAATCTTCGCGCGG AGGCGGAGGCGGTGGCAGAGAAAGCGGCTGCAGAGGAAGCAGCGGCGGCA GCAGCGGCGAGAGCGGAGGCGGAGCGAGTGGCTCCGGAGCAAGCGGCGGC GAAGCAAGCGGCGGCGAAGGAAGCGGATGCAGCAGCAACGGCGGCAGCGG TGGAGGAGAAAGCGGCTGCGGAACAAGCGCAGTTTGAAGAACGTCTTCGC CAGGTGCAAGCTATCATGGCTAGAACCAACAGGCTACGAGCGGGCGTTCT GCCGGAGGAGCCTGGCACACCACCTCTGTTTCCCTCTCCCGTTTCGCCCC CCCCGAGTGCTGTCTCGCCGCGCCCGCCCCTCTCGTCGCCCCACCCTCGT CCCGTTGGACATCCTCGTATGCCGCGCGCTCAAGCATCTGTTGATTGTAG CAGGGGCACAGGTGCGATGGAGTCAGGACCGGCCGTGGACACCCCGCAGT TTTCCGTCACTCTCCGTGGAACCTCCAGGCCGGATCCCGACGGTGTGCGT GAGAAGGACGCATTTGCGCCATACGACAGGCAGTCGGCGGATATCGCGTT TCTTCATCGCAGCGTCGGGATGCCCTCTCGCGATGTCACGTTCCACCACC AAGACCAATCCGACGCGGACACTGCCTGGGGAGCCTGTCGCCAAGTCGTC CTGGATGCCGTTCGCCCAACGCCCATCTCGCAGGTTACCTTCGGCACCCT CTTCAACAAAGGGTTCATCAAGAAACTCACGCCCTTCCAGCAGCAAAACG TTTTCAGGCTTGCACATGCTTTACGACGGGCTACTTTCCGCGATGAACCT CAAGGATCTATCCTGGTCACCCCGAGTGGTGGCTTACAGCCGCCTCTCAA CCGCGCGGCCTCGACCACCGACCAGCGTGATATCACCAGCTCGAACTACG GCAAGGCGACCCAACGGGACTCATCTCACTTCAGCCGTGGCTCGGGCGAG GGGCGCAATCACTCGGAGTTTACGGCACCGGCGTCTTCAACGTCGGATGA GGATTCCACGAGTCACAAATCGGCCTCCGGTTGTGGTTCCGGAGACGGTA CGCAGGGTTCTTCGAGGAAGCCCCGCGGCGAGCGTTGGGGGGATCTACCT CCGACGGACAATACCCAGTCTACGGCAGCGCCTTCGAAGAAGCCCCGAAG CGAGCGTTGGGGGGATCAACCTCCGACAGAAAATTCCCGGTCTACGGCTG CGCCTTCAAGGAAGCCCGGCGGCGAGCGTTGGGGAGATCTACCTCCGACG CACAATACCCGGTCTACGTCAGTGCCTTCGAGGAAGCCCGGCGGCGAGCG TTGGGGGGGTCTACCTCCGACGGATGATACCCGGTCTACGGCTGCGCCTT CGAGCAAACCCGACGGCGAGCGTTGGGGGGATCAACCTGCGACGGACAGT ACCCGATCTACGGCTGCGCGTTCGACGAAACCCGGCAGCGAGCGTTGGGG GGATCAACCTGCGACGGACAGTACCCGATCTACGGCTGCGCGTTCGACGA AACCCGGCAGCGAGCGTTGGGGGGATCAACCTGCGACGGACAGTACCCGA TCTACGGCTGCGCGTTCGACGAAACCCGGCAGCGAGCGTTGGGGGGATCA ACCTCCGACGGACAATACCCAGTCTACGGCTGCGCCTTCCAGGAAACCTG GCGGAAAGCGTTGGGAGAATCAACCTCCTTCGGAAAATGCCCGGTCTACG GATACGCCTTCGAGGAAGCCCGGCAGCGAACGTTGGGGGGATCAAGCTCT GACGGATGATGCCCGGTCTACGGCTGCGTGTCATCGCGGCGGGAGGAAGA GTGAGAACGAGGATCGTCGCCGGTCCAACAGGTCTCCACCCGTACGTCGC CGCGGAAGGAGAAGAAGCCGGAGCGCCGTTAGGAGCCGGACCCACAGGTC TCCGCCAGCGCGTCGTCGCAGCTGGAGCAGGAGCCGGAGCGAGGATCGGA GCAGGGCTAACAGGTCTACGTCTGGATGTCGCCGCAACCGGAGCAGGAGC CGGAGCAGGAGCCGGAGCAAGGATCGGAGCAGGGCTAGCCGCTGCAGTCG GAGCAGGAACCTGACCGAGGACCGCAGCATGGCCACTAGCCGTGGCAGTG GAAGGTGGTACCGGTCGGAAGCGGAAGCACAGCAACGGTGACAGGCGAGT AGAGTAAGACCGAGGTGATTTTGTAGCCACATGTATTTGGGTGAAGAAGG GGGCGGATCAGATGGAGAGTTCCACGATTCTCCACCGCCTGTTTCCCGCC CGCCTGTTGCTGTAGGAGAACCATCTGTGCCTTCCTTGGCTTAAAGGCTT GCCAACATGCAACTGCAAGAACACTCAGCCTCTGTGAAAAGTCACGCCCC TCCAAACGTCGCCGATGGACATCACACGCCTATCTTGACTCCGGATGAGC GCCTTGAGTCACCGCGCCAAGCTGCATCACACACTTCGCCTTGGGCCTCA CGTATTGAAATGCTGTTGGAGGGAGTTCTGACTCTTTTTTGGACACAGAC ACCTCGTCATGTTGTGGATGCTACTGCCGATACGGATGCACAATCGCCCG CACCCCAGAATCCCTCCCCTAGCGTGGAGCGACCTCTTGCCCCGTTTGTT TCGTAACGGCCGGATCCTGCATTGTCACGCGACAAAGCTTCGAGTGCTTC TGGAGCTTCTGCCTCTCCTGTGGTGTCTATACAGGGGCGACAGTGGTGTC GTAGGCGCCAGCCTTATCGGTAGGATCAGCAGCGGTGACGCCAGCGCCAG CGGCCCAGGCTTTGGTCGTGCAGCCTGCTTCGAAAGCGTCGTCGTCGCCG CTCCCGGTAGCATCGGCCAGTGCTTTTCATAACAACACCCGGGTGGAACC TCACAATCCTCTTGGCCTTCTTTGCAACAACCTTCGTTAGCACCCCTCAG CGCACGTCTTTTGCGACATACACAAGTTCTACGGCAGGAAAACCCGTCAC ATCGCCGAGCAGGGTCTTCCACGGGCGCCAGAGTGTGGAAGGACGCCCTG GATGCTGCGGACGGCGCTGCTGCAGAGGCAGACATCATCCATATTCAAGA CAAGATGGACAAGCTGAAGCCGGAACAACTTGATGGTGTTAACCGTTTGC CCCTTGGTCCCGATCCTGACGAATTTGCTCGTTTCGCGTCTAGCTGCCAG CTCGTCGTCGCAGAAATCCTCACCAAAACCGATGTCAAGCGTCAACATAA CTTCCATTTTACCACCTGGGTCAGCGGATGGCTTCCATTGTTGCGCAAAC GTGTCCGTGCTACTGTCGTTGAAGGTCAACCAAGCAACCGTACCACCATG GAATTTCTCAATGACATCTTCCAACAGGTAGAAGCTCATCTGCGCAAGGA CCCAGCGGGGCCCTCGACGCACACATGTTTCATCCAGAAACTGGCGGGCG CATGGGGCTTCCAAGACAAGAGCTCCGGGGATTGATCGTCTTCGTAGTTT TGGAGTGCCCAACGGGGAAACTTTCCGAGAGTACATTCGTCAGTTTAAGG CTTGACTGAAACTGTCATGGTCTCATCACCCGTTCAAGCATTCGGATGCG CAAGTGCAAAACAGCTGTTCGGGACTCATGTTGAAGCAGTTTCCGGTTTT GTCTAGGCAGTTGCGTAAGGTTGAACAGCTCACCATTGAGGCCCCGTGTG GACGGCATGACTCTTGCTTGGGCGACATGTGGGACTTGTGGACAAGCGTG TGATAGTACACACGCCCGATGTGAATGGAGAGAGTTCTTTTCCTGTGTCT TCGATGAACCTTGGGAATTCGGCTGCTGTTTCGCGTGCGGTAGCTTCATC GGCGTTGAGTTCGACTGCACCTCCTTTTTTGGAGCAAGGACTCTTCGCTT GCTGTGATGAGTGTTGACCCTCTACCAAACAATGATCGGGACATCGGGAC CCTTTTTTGCTGCACTATTCACATAGTCTAGACCGTTGGTTTTACGGGGA TATGTGTGTGGAGAGTTCCCTAGATTG
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Coding sequence (CDS) from alignment at Scaffold_129:655097..659473-

>EsuBft525_7a-0001 ID=EsuBft525_7a-0001|Name=EsuBft525_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1734bp|location=Sequence derived from alignment at Scaffold_129:655097..659473- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCCAGGAAAAAGAATTGGTGGACTTCGAGCACGAGAAGGACCA
GCAACAAGACCAGGGGCCCCAGCGGTCCTCGGGCGGCTCGGGTAGCTCTT
CGGAGGATGTGGAGGACGAGTCGAGGATCTGGCGCCGCCCCCGGTTCCGT
TTGGCTCGGGTGCAGGCCTTGCTTCAGGATGCGTCTTCGGAGGACCTGTC
TGCTGCCTTTCGTGACGGAGACATCACTCTTCGAGATATTGTGTCAACGT
GTTTGTCGTCCGATGTCCCTCGTCCCGTGCCCCCCTTCGACCTAGATATG
TCGCACGAGGAAATTTCTCGCTTGCCCCCCGATGACTACGACGCATTGCT
CCAACTTAGCGAACACTGGCACGGGCGTTTGACGGAGAATCTTCGCGCGG
AGGCGGAGGCGGTGGCAGAGAAAGCGGCTGCAGAGGAAGCAGCGGCGGCA
GCAGCGGCGAGAGCGGAGGCGGAGCGAGTGGCTCCGGAGCAAGCGGCGGC
GAAGCAAGCGGCGGCGAAGGAAGCGGATGCAGCAGCAACGGCGGCAGCGG
TGGAGGAGAAAGCGGCTGCGGAACAAGCGCAGTTTGAAGAACGTCTTCGC
CAGGGGCACAGGCAGTCGGCGGATATCGCGTTTCTTCATCGCAGCGTCGG
GATGCCCTCTCGCGATGTCACGTTCCACCACCAAGACCAATCCGACGCGG
ACACTGCCTGGGGAGCCTGTCGCCAAGTCGTCCTGGATGCCGTTCGCCCA
ACGCCCATCTCGCAGGTTACCTTCGGCACCCTCTTCAACAAAGGGTTCAT
CAAGAAACTCACGCCCTTCCAGCAGCAAAACGTTTTCAGGCTTGCACATG
CTTTACGACGGGCTACTTTCCGCGATGAACCTCAAGGATCTATCCTGGTC
ACCCCGAGTGGTGGCTTACAGCCGCCTCTCAACCGCGCGGCCTCGACCAC
CGACCAGCGTGATATCACCAGCTCGAACTACGGCAAGGCGACCCAACGGG
ACTCATCTCACTTCAGCCGTGGCTCGGGCGAGGGGCGCAATCACTCGGAG
TTTACGGCACCGGCGTCTTCAACGTCGGATGAGGATTCCACGAGTCACAA
ATCGGCCTCCGGTTGTGGTTCCGGAGACGGTCTCCACCCGTACGTCGCCG
CGGAAGGAGAAGAAGCCGGAGCGCCGTTAGGAGCCGGACCCACAGGTCTC
CGCCAGCGCGTCGTCGCAGCTGGAGCAGGAGCCGGAGCGAGGATCGGAGC
AGGGCTAACAGGGTCTTCCACGGGCGCCAGAGTGTGGAAGGACGCCCTGG
ATGCTGCGGACGGCGCTGCTGCAGAGGCAGACATCATCCATATTCAAGAC
AAGATGGACAAGCTGAAGCCGGAACAACTTGATGGTGTTAACCGTTTGCC
CCTTGGTCCCGATCCTGACGAATTTGCTCGTTTCGCGTCTAGCTGCCAGC
TCGTCGTCGCAGAAATCCTCACCAAAACCGATGTCAAGCGTCAACATAAC
TTCCATTTTACCACCTGGGTCAGCGGATGGCTTCCATTGTTGCGCAAACG
TGTCCGTGCTACTGTCGTTGAAGGTCAACCAAGCAACCGTACCACCATGG
AATTTCTCAATGACATCTTCCAACAGGTAGAAGCTCATCTGCGCAAGGAC
CCAGCGGGGCCCTCGACGCACACATGTTTCATCCAGAAACTGGCGGGCGC
ATGGGGCTTCCAAGACAAGAGCTCCGGGGATTGA
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