EsuBft525_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft525_3a-0001
Unique Name	EsuBft525_3a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:616870..619178 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	400682.PAC_15718351
ProteomeId	EsuBft525_3
Protein domains	IPR009057
Protein domains	IPR007889
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	33208\|Metazoa
Length	230
Evalue	1.16e-06
EggNOG OGs	KOG3105@1\|root,KOG3105@2759\|Eukaryota,3A3P5@33154\|Opisthokonta,3BQDY@33208\|Metazoa
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Jerky protein homolog-like
COG category	B

Cross References

External references for this mRNA


Database	Accession
GO	0003677

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a	EsuBft525_3a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 616870..619178 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a-0001-exon	EsuBft525_3a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 616870..619178 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a-0001-exon	agat-three_prime_utr-17775	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 616870..618667 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a-0001-cds	EsuBft525_3a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 618668..619039 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a-0001-exon	agat-five_prime_utr-11287	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_129 619040..619178 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft525_3a-0001	EsuBft525_3	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 618668..619039 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:616870..619178-
coding sequence from alignment at Scaffold_129:616870..619178-

spliced messenger RNA

>EsuBft525_3a-0001 ID=EsuBft525_3a-0001|Name=EsuBft525_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2309bp|location=Sequence derived from alignment at Scaffold_129:616870..619178- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTGCTCCGCGAAACCGTAGCTCTCGTTTGAGCACCACAGCGTGGCACGCC
GAGCATTCCACCCCGAGATACAGCCGAGGGAGCCCCCACCGCTCCCGCTA
CTAGCCACCTTAGTCGTTTCCTTGGGATTTTTGCTAAGCATGACCCGGCG
CAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGCGATAGATGATG
GAATGTCGGTTAGGAAGGCTGCTGGGGTCTTTGGGGTAGGTCGTACGTCC
ATCGAAGACCGCCGCCGTGGCAAGGTGGCCATGAACGCGAAGGTTGGTGC
CGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGAAGATATTCTGC
TGTTTGCTGCTCGCAACTTCTTGGCTGTGGGTCGGGTTCACCTCAGAGAT
GCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGA
GAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCGNNNNNNNNNNNNNN
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NNNNNNNTGTGTGTGTGTGTGTGTGTGTGTTTTGTTGCGATACATGTTTA
TTACTCATGCTTACAGGTTCCCTCAGAAGCACTCGTCGCGGGGGTGCAAA
GGTGTTTTGAAACTACAGTTATTTTCGGCGTTAATTCTTACCGTAGCGGC
AAGCCTAAAATCGGGAAAAAGTATCCTTATTTGACCTTAAATATATCTTC
AGGTGTGCTCCAATGGGCGTGGAATTGTGAGTACAGTCGAAACATACCCT
GTAGAACGTCGTGTGGTTCGTACGCTATTTGATGGTGATGTTCGTGCGTT
CCTGTACCGGGGGGGGGGAGGGATGCACAGGTTTTGACCGAAAACCCGGG
GACGCGGTGGTTCTGTCCCCGGGGTGGCTTTTTTTTTTTTTTTGTTCTTA
ACATGTTTGTCACTCATGTTTAAAGATCCCCTCCAAAGGTTGTGTCGTGG
GGATGAATGAGTATTCCTCTATGGTGGATACAGTTTGGCGGTGTTCGGCG
TGAATTCTTACCATCAGCGGCATGCTACATCAGGAAAAAGTACCCATATT
TGACCGAGC

protein sequence of EsuBft525_3a-0001

>EsuBft525_3 ID=EsuBft525_3|Name=EsuBft525_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=124bp
MTRRKVDEEQVRKACAAIDDGMSVRKAAGVFGVGRTSIEDRRRGKVAMNA
KVGAETILSKEEEDSLEDILLFAARNFLAVGRVHLRDAVRRLCNDGRRIP
WDPEKGPGKDWLAGFRXXXXXXXX

mRNA from alignment at Scaffold_129:616870..619178-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft525_3a-0001 ID=EsuBft525_3a-0001|Name=EsuBft525_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2309bp|location=Sequence derived from alignment at Scaffold_129:616870..619178- (Ectocarpus subulatus male Bft15b)
TTGCTCCGCGAAACCGTAGCTCTCGTTTGAGCACCACAGCGTGGCACGCC
GAGCATTCCACCCCGAGATACAGCCGAGGGAGCCCCCACCGCTCCCGCTA
CTAGCCACCTTAGTCGTTTCCTTGGGATTTTTGCTAAGCATGACCCGGCG
CAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGCGATAGATGATG
GAATGTCGGTTAGGAAGGCTGCTGGGGTCTTTGGGGTAGGTCGTACGTCC
ATCGAAGACCGCCGCCGTGGCAAGGTGGCCATGAACGCGAAGGTTGGTGC
CGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGAAGATATTCTGC
TGTTTGCTGCTCGCAACTTCTTGGCTGTGGGTCGGGTTCACCTCAGAGAT
GCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCTTGGGATCCAGA
GAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCGNNNNNNNNNNNNNN
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NNNNNNNTGTGTGTGTGTGTGTGTGTGTGTTTTGTTGCGATACATGTTTA
TTACTCATGCTTACAGGTTCCCTCAGAAGCACTCGTCGCGGGGGTGCAAA
GGTGTTTTGAAACTACAGTTATTTTCGGCGTTAATTCTTACCGTAGCGGC
AAGCCTAAAATCGGGAAAAAGTATCCTTATTTGACCTTAAATATATCTTC
AGGTGTGCTCCAATGGGCGTGGAATTGTGAGTACAGTCGAAACATACCCT
GTAGAACGTCGTGTGGTTCGTACGCTATTTGATGGTGATGTTCGTGCGTT
CCTGTACCGGGGGGGGGGAGGGATGCACAGGTTTTGACCGAAAACCCGGG
GACGCGGTGGTTCTGTCCCCGGGGTGGCTTTTTTTTTTTTTTTGTTCTTA
ACATGTTTGTCACTCATGTTTAAAGATCCCCTCCAAAGGTTGTGTCGTGG
GGATGAATGAGTATTCCTCTATGGTGGATACAGTTTGGCGGTGTTCGGCG
TGAATTCTTACCATCAGCGGCATGCTACATCAGGAAAAAGTACCCATATT
TGACCGAGC

Coding sequence (CDS) from alignment at Scaffold_129:616870..619178-

>EsuBft525_3a-0001 ID=EsuBft525_3a-0001|Name=EsuBft525_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=372bp|location=Sequence derived from alignment at Scaffold_129:616870..619178- (Ectocarpus subulatus male Bft15b)
ATGACCCGGCGCAAGGTGGACGAGGAGCAGGTTCGGAAGGCCTGTGCAGC
GATAGATGATGGAATGTCGGTTAGGAAGGCTGCTGGGGTCTTTGGGGTAG
GTCGTACGTCCATCGAAGACCGCCGCCGTGGCAAGGTGGCCATGAACGCG
AAGGTTGGTGCCGAGACCATCCTGAGCAAAGAAGAGGAGGATTCGCTGGA
AGATATTCTGCTGTTTGCTGCTCGCAACTTCTTGGCTGTGGGTCGGGTTC
ACCTCAGAGATGCGGTGCGACGACTCTGCAACGACGGTCGGCGGATCCCT
TGGGATCCAGAGAAGGGTCCGGGGAAAGATTGGCTTGCGGGCTTCCGNNN
NNNNNNNNNNNNNNNNNNNNNN