EsuBft525_23a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft525_23a-0001
Unique NameEsuBft525_23a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:810452..811174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft525_23
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsCoil
Protein domainsSIGNAL_PEPTIDE_C_REGION
Protein domainsSIGNAL_PEPTIDE_N_REGION
Protein domainsSIGNAL_PEPTIDE
Protein domainsSIGNAL_PEPTIDE_H_REGION
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length66
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft525_23aEsuBft525_23aEctocarpus subulatus male Bft15bgeneScaffold_129 810452..811174 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_23a-0001-exonEsuBft525_23a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 810452..811088 -
EsuBft525_23a-0001-exonagat-exon-70722Ectocarpus subulatus male Bft15bexonScaffold_129 811151..811174 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_23a-0001-exonagat-three_prime_utr-17773Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 810452..810674 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_23a-0001-cdsEsuBft525_23a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 810675..811088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_23a-0001EsuBft525_23Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 810675..811174 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft525_23a-0001 ID=EsuBft525_23a-0001|Name=EsuBft525_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=661bp|location=Sequence derived from alignment at Scaffold_129:810452..811174- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCGCCCTCATCAATCAAAGGAGAAGGAGGGGGAAGCAGAGGGG
GAGGAAGAGGAGGGGGACGGGGAGGAGGAGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGAGGAGGAGGAGGAGGGGCCTGGCGGTGGAGGGGCTAGCGCGGAGG
CGGGGGTGGTAGACGTGGACATGAGCGACGGGCAATAGACGACATGAGAG
ATGAAACACGAAAGAGTAGGCTTCGGAGGCGTATGGTATGAAATAGGACT
CTTTTTCTCAATGATGACTAGTGATAAACCGGTGCATTACTGCGACTAGA
CAGAGTTATTTACTTCCAAAGAACACAGATAAATGGACGAGCCCCGATCC
ATCTTGCGCAACAAGCATAGGATGCACGAGAGGGTGTTAAAAGGGTACCT
GTACGGGCTAG
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protein sequence of EsuBft525_23a-0001

>EsuBft525_23 ID=EsuBft525_23|Name=EsuBft525_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=145bp
MVAALINQRRRRGKQRGRKRRGTGRRRXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXEEEEEGPGGGGASAEAGVVDVDMSDGQ
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mRNA from alignment at Scaffold_129:810452..811174-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft525_23a-0001 ID=EsuBft525_23a-0001|Name=EsuBft525_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=723bp|location=Sequence derived from alignment at Scaffold_129:810452..811174- (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGCCCTCATCAATCAAGTACAACCGAGGAAGGGATAGGCATT
CTCTGAAGCTGCGGAATGACAAGGAGGAATTAGCAGAGGAGAAGGAGGGG
GAAGCAGAGGGGGAGGAAGAGGAGGGGGACGGGGAGGAGGAGGNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNGGAGGAGGAGGAGGAGGGGCCTGGCGGTGGAGGGG
CTAGCGCGGAGGCGGGGGTGGTAGACGTGGACATGAGCGACGGGCAATAG
ACGACATGAGAGATGAAACACGAAAGAGTAGGCTTCGGAGGCGTATGGTA
TGAAATAGGACTCTTTTTCTCAATGATGACTAGTGATAAACCGGTGCATT
ACTGCGACTAGACAGAGTTATTTACTTCCAAAGAACACAGATAAATGGAC
GAGCCCCGATCCATCTTGCGCAACAAGCATAGGATGCACGAGAGGGTGTT
AAAAGGGTACCTGTACGGGCTAG
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Coding sequence (CDS) from alignment at Scaffold_129:810452..811174-

>EsuBft525_23a-0001 ID=EsuBft525_23a-0001|Name=EsuBft525_23a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=438bp|location=Sequence derived from alignment at Scaffold_129:810452..811174- (Ectocarpus subulatus male Bft15b)
ATGGTTGCCGCCCTCATCAATCAAAGGAGAAGGAGGGGGAAGCAGAGGGG
GAGGAAGAGGAGGGGGACGGGGAGGAGGAGGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNGGAGGAGGAGGAGGAGGGGCCTGGCGGTGGAGGGGCTAGCGCGGAGG
CGGGGGTGGTAGACGTGGACATGAGCGACGGGCAATAG
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