|
|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 2880.D8LLP4 |
| ProteomeId | EsuBft525_18 |
| Protein domains | IPR003591 |
| Protein domains | G3DSA |
| Protein domains | PTHR23155 |
| Protein domains | IPR001611 |
| Protein domains | SM00365 |
| Protein domains | SSF52058 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | leucine-rich repeat-containing protein 57 os:danio rerio gn:lrrc57 pe:2 sv:1 [Automatic annotation] |
| Nb exon | 6 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1943 |
| Hectar predicted targeting category | other localisation |
| Evalue | 7.95e-159 |
| EggNOG OGs | COG4886@1|root,KOG0619@2759|Eukaryota |
| Ec32 ortholog description | Leucine rich repeat protein |
| Ec32 ortholog | Ec-04_004990.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | LRRC57 |
| Description | regulation of response to stimulus |
| COG category | U |
Cross References
External references for this mRNA
| Database | Accession |
| GO | 0031227 |
| GO | 0044707 |
| GO | 0008152 |
| GO | 0004871 |
| GO | 0042995 |
| GO | 0043226 |
| GO | 0044767 |
| GO | 0050794 |
| GO | 0003333 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft525_18a-0001 ID=EsuBft525_18a-0001|Name=EsuBft525_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1943bp|location=Sequence derived from alignment at Scaffold_129:756656..762959- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GTGGACTATGGACATGGCATGTGTAGTGTACATCTCCAAATCTCCAGTGA ACCTGCAAACACTGCTGTCACGACTGCATACGGCTCCAGCACACGGCATT TTTCAGCTCGGGGTACAGTAATAGTGTGGGTCTCAATCTAGCAAGGAACA GACAGAGCGTAGAATCGGCGACAGCAGCATTTTTTACGGAGAGATTGCGC AACCAGTCCGTGGGAGATCACGGTCAGAACTTCAAGTTCTCGTGTCCTGC TGCGAGAGCTCGCTTGGGAACAAGAGTCAATAGCAGCATGGGGAACAAGG AATCGTCGCATTCTTCCACGTTCTCAAGGGGCCAGGGCGCCACATCAGAC TTCCGGGATGCCTTGACGAGCTTGCCAGGCAGCGCTCCCAAGAACAAGAC CGGGAGGAAGGTGACGGCCCAAAAGATGAAGACGGCAGAAGCCACGGGCG TGCTGGCACTGCAAGAGCATGGCCTTAAGGAAATACCAGAGGGGCTTTTC ACGCTGGTCAAGCTCAGGACGTTGAACATGGCGTCCAACTCCCTCAAGCT CCTACCTGCGGCGATGAGCACCCTCACCAAGCTCAAGATCCTGCGACTCG ATTCCAACAAGCTCGAGGCTATCCCAGACCTCAGCGCGCTTTCTTCCCTG ACGGACATCTCCGCGGGATCAAATCGGCTCGCCGGGGCAGGAGCTTTGGG GGCGCTGCCGGGGTGCCTGAAGAAGCTTATGCTGCGGGATAACAGCCTGG GGGAGGTGCCAGCAGCCGTGCTGGACGGGCTTCCGGCGCTTCAGGTGCTG GACCTATCAGCCAATGGGATCGAAGGCCTCCCGCCCTTCGGAGCCACGCT TCCGGCCCTGGAGGAGCTCATCCTTGACGACAACTCGTTGCGGGCGTTGG GACACGAGCTGGTGGGGCTGGCAAAGCTGAAGAAGCTCTCGGTTAGATCG AACCGCATCGCGGCCGTGGACCCGTTCAGCGGGCAACAGTCCATATCTCG AGGGTTGTTCGCCGACTCTGCGGTGGAGTCCCTGGAGCTCGCGGGCAACG CCCTCGACAAGACGGACCTGATGCGGATGGAAGGGGTGGACGACTTCCTG GCCCGCAGAGAGAAGAACAAGAACAAAAACTTGCAGGGGGGAGGGATGCT GACACTTTCCGTCTGCGGCCTGGACTAGCGGCGCTTCGTTTTTCGTTGTT TGGCCTGCTGGGCATCCCCTACCGCCGCCAACACCTGTGGCAGCGAAAAG ACATATGTTGCTTTGTTCGGAGGTTTAGTCTGATTTCTGTATGTTGTGTC TTCGACTTGGGCAAGGTTCATGTTCAAGGCTATTGTTGCGTGTTTCATCG AAGGGCCATGTTGGCGAAGGGCAAGGTTGGCGCGGCCAAAGGCGCGCTTG TTGTGGTATCCCCATGCCTTTGCTGTCTCGGCACAGGCAAGTTGTCCTTA TCATTTGTAAGCTACTTTGAATCAGCGTTTGAAGGTGTGGTGTATTGAAG TGCATTTTTATTCGGGTTGTGTTTCTTTGGAGACCCTGTAGCACGCTTGA ATTCAATACCTCAGTGCTGCACATATACGACGGCATAAAAAGGTACCAAA CCTCTCGTAAGAACTCAGGCTGCAGGTCAGGCCGCGTTTGTACAGGGTAG GCTGAAGCACCGGCGGCGTGTTTGTCCATAATGGTAGTGTAGCTATAGTG ATGGTGTCGACAACAATGTCACCTTTTTGTATTGTTCTTTTTCCACCGAG CGAACGAAAATTAACGTATTTGTGCACTTCGAGCATCTGTCCGGCATGTT GCGTCGGGGTGCGCTGCATCCAGACATCGTTCTTCTATCAGCGGGTGACT TAAACTCTGGTGTATTGTCCAGCCATGCACGACATCACGGTTGTGCTGTA ACATCCGTCCCGGAATAATGCTGCCGTTGCTGTCTGTCCGAAT back to topprotein sequence of EsuBft525_18a-0001 >EsuBft525_18 ID=EsuBft525_18|Name=EsuBft525_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=296bp
MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTA EATGVLALQEHGLKEIPEGLFTLVKLRTLNMASNSLKLLPAAMSTLTKLK ILRLDSNKLEAIPDLSALSSLTDISAGSNRLAGAGALGALPGCLKKLMLR DNSLGEVPAAVLDGLPALQVLDLSANGIEGLPPFGATLPALEELILDDNS LRALGHELVGLAKLKKLSVRSNRIAAVDPFSGQQSISRGLFADSAVESLE LAGNALDKTDLMRMEGVDDFLARREKNKNKNLQGGGMLTLSVCGLD back to topmRNA from alignment at Scaffold_129:756656..762959- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft525_18a-0001 ID=EsuBft525_18a-0001|Name=EsuBft525_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=6304bp|location=Sequence derived from alignment at Scaffold_129:756656..762959- (Ectocarpus subulatus male Bft15b) GTGGACTATGGACATGGCATGTGTAGTGTACATCTCCAAATCTCCAGTGA
ACCTGCAAACACTGCTGTCACGACTGCATACGGCTCCAGCACACGGCATT
TTTCAGCTCGGGGTACAGTAATAGTGTGGGTCTCAATCTAGCAAGGAACA
GACAGAGCGTAGAATCGGCGACAGCAGCATTTTTTACGGAGAGATTGCGC
AACCAGTCCGTGGGAGATCACGGTCAGAACTTCAAGTTCTCGTGTCCTGC
TGCGAGAGCTCGCTTGGGAACAAGAGTCAATAGCAGCATGGGGAACAAGG
AATCGTCGCATTCTTCCACGTTCTCAAGGGGCCAGGGCGCCACATCAGAC
TTCCGGGATGCCTTGACGAGCTTGCCAGGCAGCGCTCCCAAGAACAAGAC
CGGGAGGTACGTGTACATCTGACGGCAAACGAACGCCCATACTGCTCGCG
CTGCTGCTGACGTTGTCGTTCCGGGCGTGGAGTAGGTTGCGTAGTACCTT
ACTGCGGGCCTTTGGTGGGACTCGGGGGCCAGCGCAAGCGTACCATGTCG
CAGAACCAGAGAAGTCATCGTCCAGTTCAGCTGAGAAATATGGTTCTACA
TTTTTTCACAGATAGTCTACACGAGACGGCTACCAAGCTGTCTTGTTGAC
CCTGTTCCCCACTGGGGAGATAGATGTCACTACGCTGTCAACGATGAGTG
CTAATTTTTAGAAATCTAGAAAATATAGCTAAGGCATTAATCACTCCGCC
TGAGGAGTACGAGCGCAAGCTTAAAAATCAACGGAATTGGCGGGGGTCCA
AACAATCCAACCTAAAAAAACTAAATCTCGTAAATACTTTAAAACTCGAA
AAATACCAAATAATTCGACAGAAACACATAGATTAAAAATTTAAATTGCT
TTGCTTTAGTTTTTAAATGGGAGACAACTAGAAGCAGCGCGTCAAAATGT
TAGACGTTAAACGGGAGGGAAAACTTAAAATTTCTGTTTTTCCATGATCT
GTAAGAATTCTACGTAAATCTGGATGATTAGAGAAAAATACTCCAAATAA
ATCCCATATTTCACGCTCCCACCAATTAGCGGAAGGAAATAAACTTACTG
CAGAGGGTAAAGGGTTTACTTCATCTGTACTATTCTTCTAAATATTATTG
ACCTTGTTGTTCCTCTATGAATCACTGTTGCTTTTTTTACTTTAGCAGAA
CGAAAAATTATGGCGGGGATTCAAAGACGAAAAGGTCCTAACGTTATTGG
TTTTATGGGGTTACTTCAGCCTTTGTAAAAGAAACTGTTTTGCCTACTAG
AAGTATTTATTAATAATGCAAATATTGTTCTCGTTATACTTGCTCCTCTT
TGTACTTTTACTTTAAGCCTAATAAGTTGGGCAGTTATTCCTTTTAGTTA
TGGTAATGATAATGCTGATACTCAGCTGGGAGGTTTACATTTTTTAGCAG
TATCTTCTTTAGGTGTTTATGGTGTTTTAATTTCGGGTTGGTCTAGTAAT
TCTAAATACGCGTTTTTAGGGGCTTTGCGATCTGCTGCTCAAATGGTTTC
TGTGAGATTTCAATGGGTATTGGTTTAATCAACGTTTGTTTGTGCGTAGG
TACTTGAAATTTAACTGAAATAGTTATTGCTCAACTAAATGTCTGGCTTA
TATTTCCGCCTTGTTGTGTGCTGCTCGGGAAATCGTGGAAAAACAGAAGT
TTTGCTAACGCTATGGATTCATTGCTAATCTATCTTAGACTTCTTCGATA
GAGATGGATTCGTTGGGTCATACTGATGAAGTAAGATCTAAAAAGACATG
AAGACCGTACATTAGTCCATGGCGCGCCCTCTCCTCCCCATCGCCCCCCC
CCCCCCTCCGCCAAGCTTATCAGCAGCAGCGGGGCACCTCCCGGCGTTTT
GGGCGCTCCAGCAAGACTTTCGAGGGCGGTTCTTGACGTTCCGATTCTGC
AGCCTCCACCCTCACCTCAACCAACTACGTGCCAGCACTGAGGCCGTCAC
CAAGCTCTTCCTTTCCATCATGTCCCTCACGCGTATGGATACTACAGCAG
TGCTTCAGTATTAACGCTCTGCGCTCCTCTGGCGTTTCCCTCATGACCAT
GGGTGATGAGTGCTATCGCCACACCGCTCCATCGACGACCTCCCCCGAAT
CGATGCCAACGTTTGGCGATCCAATCATGCAGGAAGGTGACGGCCCAAAA
GATGAAGACGGCAGAAGCCACGGGCGTGCTGGCACTGCAAGAGCATGGCC
TTAAGGAAATACCAGAGGGGCTTTTCACGCTGGTCAAGCTCAGGGTGAGA
GAGACAGACTGGAAAGTGCGAGCAGAATGCCAGGAGAACGGCTGGAATAT
GGCCGGGGATTTACCTCTCGTGCTAAGCAAGGATCAACTTTGCGCGAACT
TTGTGTTTTGTCCTCTGGGGCGCTAGGATAGCATATTTCAGTTTCATTGG
CTGGTGCGTCCAACATACAACGAATCGGGTAGAGACTCACGCCCAGAATA
CGTGGGACGAATTCTAACGCACACATACATGTTCACACCCCCCCCACCTC
TCTTTCGCGGGTGGCCTCCTCCTCGAAGCGGGTTGGGTAATTAACTACAC
TGCCTGTCTGTGCATGTTTTGTGCGTGTGTGGGGGGGGGGCACTGCGCGT
GATTGTTACAGACGTTGAACATGGCGTCCAACTCCCTCAAGCTCCTACCT
GCGGCGATGAGCACCCTCACCAAGCTCAAGATCCTGCGACTCGATTCCAA
CAAGCTCGAGGTGCGTACCTCTTCCCGATGACTACTGGCGGCGTCTGCCC
GTATGAGACGGCCTTTTCGTGGGTGGAGGAAAAGCACCAAACCGTGGGTC
CTTGTTTCGCAATGCTTGTGCGTTTTTCTCGTCTCTCTGGTGCGTTTCTG
TAGCTGGCAGGGACCCGTTGAACGACTGAAAAAACCGAAGCGGGCTGTAT
CTGCGGCTTGCCAAACGAAGGTACGACTGGGCTCCCGGCCCTCCCCCGCT
TCGTCTGCGATGGGATACTTGTAAACGACCCAAAGCACTGAGACATGTAG
TTCTCAAAGTACCTTGGACAAAACTCCCCTTTCAAGTAGCTGGAAGAGTA
GATGGTGAAAAATGTGACGTCGCTTGGAGCAGGGCCAACAAAAGGAACTG
CGTACAAACCTCCATGCGCAACTCCTCATTCACTTCCACCACCTACGCCG
TCTTGACCAAAATTTTCGTAGCCAATGGTTCAAAGGCCTAAGGTAACAAA
CACATGAGTATGCCCCCTGCCCCCCCTCCCATCCTTTATTTTCCCCATCT
CGCGCGTTCCGTCGGTGCTGCACAGGCTATCCCAGACCTCAGCGCGCTTT
CTTCCCTGACGGACATCTCCGCGGGATCAAATCGGCTCGCCGGGGCAGGA
GCTTTGGGGGCGCTGCCGGGGTGCCTGAAGAAGCTTATGCTGCGGGATAA
CAGCCTGGGGGAGGTGCCAGCAGCCGTGCTGGACGGGCTTCCGGCGCTTC
AGGTCAACACCCGACAGCAGCATCAGTAATGGATGCCTTGATCAATCGGG
GTTTGGGGGCGGGGAACCTTTGGGGTTGGCGTGCTGGGTGAGACGAACCC
TGCGGCATTTTCGAACTATTGTCGGTGTTTCGAGGAGAAAGCACCAAGCG
ATGCCCTACTGCTATGAAGCCCTTCAAACACAACTAGCGGCACATTGCGG
AGAAGCAACGAGGGGCCTGAATGTCACGCAGGTTTTGGCAGGGGATTGGT
TACGTGAGTCTTCCTCATGAAACTTGCTACATCACGGGTGGTCCCTATGT
TAACAGTGTCCTGATCTGTATCGGCGGAGTCGGCCATCAATGAGAAGGTT
CTGAAACGCTACCTAGACTTCGCTAGGTTGCCTGACGTTTCCTCGGGTTC
ATGCTGGGGTGTTGGGCTTGGAGCATCGAGTTCACGCTGGCATGACGTTC
TCTGCGCCAGGAACGAACCTATTGTTTTAGACCAAAATAAGCCGCTGGTT
GAACAGTCAACACTAGCAACACGACCGATTTCTTTTCGAGCTCGCGTGGG
CAATGGCAAACAGTCAACATCAGCAACTTCCCGATTCCTTTTCAGAGCGA
GAGACGTTATGATTTAACCTGTTTCTCAAAATCCTTACCCTGTGCGTGAC
CCGTGGCCGAACCAGGTGCTGGACCTATCAGCCAATGGGATCGAAGGCCT
CCCGCCCTTCGGAGCCACGCTTCCGGCCCTGGAGGAGCTCATCCTTGACG
ACAACTCGTTGCGGGCGTTGGGACACGAGCTGGTGGGGCTGGCAAAGCTG
AAGAAGCTCTCGGTTAGATCGAACCGCATCGCGGCCGTGGACCCGTTCAG
CGGGCAACAGGTGTGTGTGTTGTGTGTATTCGTCCTATTAATATGTGTTA
TGGCGATAGTCCCCCCGTGAGACGTGCCATGAGACGTGTACTACACATTT
CAGTACATGTAGGGTACTAAACTCTTGGGTTTATTTTTTCGTACAACTAC
AACCATCCAGAGTCACACAGGATAAAAATAGAAAGTAGCGACATACAGGA
AGGGTACTGCTGCACTCCCATGTTGTGATGTTTTTTCTGGTGACCGTGTA
AATCGATAGACTGATGTCGCAGGGTGTACGAGGCGAGCAGCGCACAGGAG
GTTTTTCGTGTGCTGGCATTGATCGCGTTTCTTGAATTTTAGCTTCAAAT
CCTGTCGAGTTCCCCGTTTGTCAGAATACGGCCTTGTCGCCGAGCGTGCA
CACGCACACGCATGACCTATGTCCTTCTTCCACGGCTGCTATTTTCGATC
ATGGCGATGCCCCGAGGATTGTTGCTCACCTGCACAGCAGTCCAACGCAA
AACCGTTGCTCATGTATTGCACGACGCCCCATGGTTGATTTTGTTGAGAA
GCACGACAGGGGTTAGACTGATTTAGGCATTACCTTTTGTTGAGAAGCAC
GATGACCACTGCTGTACTATCAGTCAGCGCTGAGTGGCAGTCCGTTGGTT
ATCAAGCTTGTCAACAGACTCCACGAGCGAGGTGCTGAGTCGCGCGCATC
CTCGTCCCTCCCGGAGTCCGGGCGTGTCGACCCGGGCGTGTCGACTCTCT
TCTCTTGGCCGTTAGTCTCCCGAGGGTGCGCGCCTTGCGGAAGCACCGCG
TTCCCCTCGCTATACCCTCGTACCCCGGCCTTCCTAGGCTATCTAAAATA
TCATGTCGACATAGCATAGGGTGAACCAAGCCTTGCGCGTGAAGCTGCTC
GCGCAAGGTTAATCAACACGCCAGAACAATCATGCTTGTTGCACTCTCTC
CCTTTTTTTTCGTTTTGCACGACCGCCCCTGCCGCACCGCGGCGTCGCAG
TCCATATCTCGAGGGTTGTTCGCCGACTCTGCGGTGGAGTCCCTGGAGCT
CGCGGGCAACGCCCTCGACAAGACGGACCTGATGCGGATGGAAGGGGTGG
ACGACTTCCTGGCCCGCAGAGAGAAGAACAAGAACAAAAACTTGCAGGGG
GGAGGGATGCTGACACTTTCCGTCTGCGGCCTGGACTAGCGGCGCTTCGT
TTTTCGTTGTTTGGCCTGCTGGGCATCCCCTACCGCCGCCAACACCTGTG
GCAGCGAAAAGACATATGTTGCTTTGTTCGGAGGTTTAGTCTGATTTCTG
TATGTTGTGTCTTCGACTTGGGCAAGGTTCATGTTCAAGGCTATTGTTGC
GTGTTTCATCGAAGGGCCATGTTGGCGAAGGGCAAGGTTGGCGCGGCCAA
AGGCGCGCTTGTTGTGGTATCCCCATGCCTTTGCTGTCTCGGCACAGGCA
AGTTGTCCTTATCATTTGTAAGCTACTTTGAATCAGCGTTTGAAGGTGTG
GTGTATTGAAGTGCATTTTTATTCGGGTTGTGTTTCTTTGGAGACCCTGT
AGCACGCTTGAATTCAATACCTCAGTGCTGCACATATACGACGGCATAAA
AAGGTACCAAACCTCTCGTAAGAACTCAGGCTGCAGGTCAGGCCGCGTTT
GTACAGGGTAGGCTGAAGCACCGGCGGCGTGTTTGTCCATAATGGTAGTG
TAGCTATAGTGATGGTGTCGACAACAATGTCACCTTTTTGTATTGTTCTT
TTTCCACCGAGCGAACGAAAATTAACGTATTTGTGCACTTCGAGCATCTG
TCCGGCATGTTGCGTCGGGGTGCGCTGCATCCAGACATCGTTCTTCTATC
AGCGGGTGACTTAAACTCTGGTGTATTGTCCAGCCATGCACGACATCACG
GTTGTGCTGTAACATCCGTCCCGGAATAATGCTGCCGTTGCTGTCTGTCC
GAAT back to topCoding sequence (CDS) from alignment at Scaffold_129:756656..762959- >EsuBft525_18a-0001 ID=EsuBft525_18a-0001|Name=EsuBft525_18a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=891bp|location=Sequence derived from alignment at Scaffold_129:756656..762959- (Ectocarpus subulatus male Bft15b) ATGGGGAACAAGGAATCGTCGCATTCTTCCACGTTCTCAAGGGGCCAGGG CGCCACATCAGACTTCCGGGATGCCTTGACGAGCTTGCCAGGCAGCGCTC CCAAGAACAAGACCGGGAGGAAGGTGACGGCCCAAAAGATGAAGACGGCA GAAGCCACGGGCGTGCTGGCACTGCAAGAGCATGGCCTTAAGGAAATACC AGAGGGGCTTTTCACGCTGGTCAAGCTCAGGACGTTGAACATGGCGTCCA ACTCCCTCAAGCTCCTACCTGCGGCGATGAGCACCCTCACCAAGCTCAAG ATCCTGCGACTCGATTCCAACAAGCTCGAGGCTATCCCAGACCTCAGCGC GCTTTCTTCCCTGACGGACATCTCCGCGGGATCAAATCGGCTCGCCGGGG CAGGAGCTTTGGGGGCGCTGCCGGGGTGCCTGAAGAAGCTTATGCTGCGG GATAACAGCCTGGGGGAGGTGCCAGCAGCCGTGCTGGACGGGCTTCCGGC GCTTCAGGTGCTGGACCTATCAGCCAATGGGATCGAAGGCCTCCCGCCCT TCGGAGCCACGCTTCCGGCCCTGGAGGAGCTCATCCTTGACGACAACTCG TTGCGGGCGTTGGGACACGAGCTGGTGGGGCTGGCAAAGCTGAAGAAGCT CTCGGTTAGATCGAACCGCATCGCGGCCGTGGACCCGTTCAGCGGGCAAC AGTCCATATCTCGAGGGTTGTTCGCCGACTCTGCGGTGGAGTCCCTGGAG CTCGCGGGCAACGCCCTCGACAAGACGGACCTGATGCGGATGGAAGGGGT GGACGACTTCCTGGCCCGCAGAGAGAAGAACAAGAACAAAAACTTGCAGG GGGGAGGGATGCTGACACTTTCCGTCTGCGGCCTGGACTAG back to top
|