EsuBft525_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft525_17a-0001
Unique NameEsuBft525_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_129contigScaffold_129:744426..746923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft525_17
Protein domainsTRANSMEMBRANE
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length164
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft525_17aEsuBft525_17aEctocarpus subulatus male Bft15bgeneScaffold_129 744426..746923 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_17a-0001-exonagat-exon-70689Ectocarpus subulatus male Bft15bexonScaffold_129 744426..745331 +
EsuBft525_17a-0001-exonEsuBft525_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_129 746182..746923 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_17a-0001-cdsEsuBft525_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_129 744426..744575 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_17a-0001-exonagat-three_prime_utr-17766Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 744576..745331 +
EsuBft525_17a-0001-exonagat-three_prime_utr-17767Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_129 746182..746923 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft525_17a-0001EsuBft525_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_129 744426..744575 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft525_17a-0001 ID=EsuBft525_17a-0001|Name=EsuBft525_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1648bp|location=Sequence derived from alignment at Scaffold_129:744426..746923+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTTCGGCGTTGGATATCCGCTACTTCTCGTGGCCCTACTTCTTCGC
CCTGCTCATCCTATCGGCTGGGGTAATAGCCCCGTTGATTGTGATGAAGT
CGAGACCCGCGGCGTTGTTCCGCACTGGAAGCGGTCGTATTCCGGAGTGA
TTGGTGTCCGCATGGATAGAGGGCATCGCGTAGCGCCCACGGGAGTTTCC
TGAGGTGCGCGCAAGTAGTGTCTTGACATAGCGCCAAAGCGGGGGGAATC
AGACAAGCTTGCTGGGATATGTCCGAAACGAATGAGCCTGGTGTTGCTGG
TTGGTCTGGTGGCATGGCACGTTGCTGTTAGGCCTCGCTGCAGGCAGTGC
GTAATTGCGCCGCCTTTTGCTTGGAGGGATTGTTTTGCAATGTTGGTGCG
AGAGGTGCTAGAGGTGACTGAGGTGTGTTGCGAGGAGTCTTTTCCGTTCC
GCGAAGCGCGCGAAAACGTGCCTGTATAGCAGACTTTAGCGTTGGACGTT
TGGGTCGCGTGGATAAATGTTTCGTAGATTGTGGTGTAATATGTACTGTA
CTGCTCACAATGTTGCTGTCTATTACTGTAGTCGTTTCTGTTTTGGATGT
GGGAGGTGTTCCGGCAAGCGATCGAGTAGGAGCGAGAGGGATGCGGGTCT
GCAGCAGACGGGACAAGAAGGACAACTAAGTGTTGGAGGCTCGCCGGCGG
CCACGAGAAGTTATGTTATCGCCGAGTGAGGAGGATTTACACGACGTCAT
CGAGGGGACGTGAAGGGGGCGGGGGGAGGCGGGGGGGGGGGTCCACAAAG
CCGTCATGTGTATTCATCGCGTAAATATCGAGGCGGCAAGGCGGGTAACG
GGGCGTGAGAGATGGAGGGTTCCTGTGCCGGGAGCGACGAAACAGCGGAA
AGAGAACTCCCGCACTCCATCTGAGGCGAAGACGAGCTCTCGTGGAAGCT
CGCGGATAGCACTCCTCCGCGTTTGAAGAGCTCAAGTTCCTGGATGATGA
AGCCCGACTTGTTTTCGTCTTGTTGCTTTTTTTTCTTGCTTTTTTTCTGA
TGTTTATCGGTTTGAGTCTAGACTGCAGGGGGGTCGCCAAGTTCGCACCT
TGCCGCGTGCTGCAGAATTGTTGTCCTACGGCGGCATGATTTTTACGTTT
CCACCTGTGTTCACTTGAGAGCTTTTGGGAGTTGCAAGTGTCAGCCGTGT
GACGGTTGTGTGTGTGATTGTTGTGTGATGTCAACGGCTTGGCGTATGCG
AGACCTTGTCTGGTTTCCTGTGCTCCTGCAATGATTCAAGTTCTACCTTG
TGCTGTCCGCGATTGTCCGCATTTCTTCGCGGAACTTTGCTATTTTTGTA
TTCTATCGTTTTGTCGTGTGGTCCTCCACACTACTCGTTCCGGTTGGATT
ATCTGGACGGATTTTGGAGGAAATTGGAAGAGGCCAGAATTGTTTCAATG
TGAAGGCGAGCAACAACGTAAGAGCTGGACGTCCACAAAGACTGCGGAAA
ATCTTTGGTATGATTGGCAAGTAGTGCAAATTGCCGCTTCACCGTAACTT
GTATGTTCTTTTGTGCCGGGGCTTTCCCAGCAGAACCCGACACCCAACAC
GCTGGGACTCACGACTGGGGGATGAATTTGTTGTACACCACGGACCTG
back to top

protein sequence of EsuBft525_17a-0001

>EsuBft525_17 ID=EsuBft525_17|Name=EsuBft525_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MLSALDIRYFSWPYFFALLILSAGVIAPLIVMKSRPAALFRTGSGRIPE
back to top

mRNA from alignment at Scaffold_129:744426..746923+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft525_17a-0001 ID=EsuBft525_17a-0001|Name=EsuBft525_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2498bp|location=Sequence derived from alignment at Scaffold_129:744426..746923+ (Ectocarpus subulatus male Bft15b)
ATGCTTTCGGCGTTGGATATCCGCTACTTCTCGTGGCCCTACTTCTTCGC
CCTGCTCATCCTATCGGCTGGGGTAATAGCCCCGTTGATTGTGATGAAGT
CGAGACCCGCGGCGTTGTTCCGCACTGGAAGCGGTCGTATTCCGGAGTGA
TTGGTGTCCGCATGGATAGAGGGCATCGCGTAGCGCCCACGGGAGTTTCC
TGAGGTGCGCGCAAGTAGTGTCTTGACATAGCGCCAAAGCGGGGGGAATC
AGACAAGCTTGCTGGGATATGTCCGAAACGAATGAGCCTGGTGTTGCTGG
TTGGTCTGGTGGCATGGCACGTTGCTGTTAGGCCTCGCTGCAGGCAGTGC
GTAATTGCGCCGCCTTTTGCTTGGAGGGATTGTTTTGCAATGTTGGTGCG
AGAGGTGCTAGAGGTGACTGAGGTGTGTTGCGAGGAGTCTTTTCCGTTCC
GCGAAGCGCGCGAAAACGTGCCTGTATAGCAGACTTTAGCGTTGGACGTT
TGGGTCGCGTGGATAAATGTTTCGTAGATTGTGGTGTAATATGTACTGTA
CTGCTCACAATGTTGCTGTCTATTACTGTAGTCGTTTCTGTTTTGGATGT
GGGAGGTGTTCCGGCAAGCGATCGAGTAGGAGCGAGAGGGATGCGGGTCT
GCAGCAGACGGGACAAGAAGGACAACTAAGTGTTGGAGGCTCGCCGGCGG
CCACGAGAAGTTATGTTATCGCCGAGTGAGGAGGATTTACACGACGTCAT
CGAGGGGACGTGAAGGGGGCGGGGGGAGGCGGGGGGGGGGGTCCACAAAG
CCGTCATGTGTATTCATCGCGTAAATATCGAGGCGGCAAGGCGGGTAACG
GGGCGTGAGAGATGGAGGGTTCCTGTGCCGGGAGCGACGAAACAGCGGAA
AGAGAAGTGAGTGCGACCGTAATATTCCCTGCCGAGGGGATGTTTTTGTC
TTGGTCAACACCATGGATCACACTTGGCACCTTGAACGAACACTAGATTG
CTGTTGCTGTGTCCCGCTTTTGTAGTCGAGTCGTTAGTCGGCTCTCTTCG
ATCGCGTGCCGGGCGCACGGCGTTGAGTGTGAACTTTGTTCCGTCTTTTC
GTTGCTGTGCTCTCCGTGACTGACGTTTTTTATGAAACCGAAGTTACTCT
TTTTATGAAACTCTTGCTCCACGTCACCGAGACTCATGCTGAGGCTCGAT
AGGTGTGCGGCGTTAATATATCGAATGGGTAGTCTTTCTCTGTGTGTGTT
TTTTTTCTTAGTCCGTCACGCGGATCCTGCCTTGATTGAGAGGAAACATC
GTTTATTTCGAGAGCATCCCAGCATCGCGCTCGTACCTCCGACTATTAGG
CTGCCAGGGTAGGACGATCCCCAGCAGAATGTCCTTCATTGTCGTGCAGT
ACGTGCCATCTGCACGTCTATCTCCGTAGATTTTGGTCCTGCAGACGCAC
GCTTGAATGCGATGTGGTCCACCGTCGACGAAGGCCTGCGGGGGTTCATT
TGCTTCGATTTTGGGCGTCCTATTTGTCTCGATTTGTATTTTTCGTGATG
TTGTGCCTTTTGGTCAACCGGACTGCAGGCAACGAGTGCTCTACCTCAAC
CGCCGTTTCGAGCGCTTTGCTCGGGTAGCTCTCGTTTGCCGCGCTACCTT
TTCGTACACCCATTCGTACATTGTTATTTCATGGCCCTGCCCAGGTTTGA
TTCCCTTGTTGCCGTTCTGACTCTGTTCTTCTTTGCCCGCCGCCCTTTCC
CGGCAGCTCCCGCACTCCATCTGAGGCGAAGACGAGCTCTCGTGGAAGCT
CGCGGATAGCACTCCTCCGCGTTTGAAGAGCTCAAGTTCCTGGATGATGA
AGCCCGACTTGTTTTCGTCTTGTTGCTTTTTTTTCTTGCTTTTTTTCTGA
TGTTTATCGGTTTGAGTCTAGACTGCAGGGGGGTCGCCAAGTTCGCACCT
TGCCGCGTGCTGCAGAATTGTTGTCCTACGGCGGCATGATTTTTACGTTT
CCACCTGTGTTCACTTGAGAGCTTTTGGGAGTTGCAAGTGTCAGCCGTGT
GACGGTTGTGTGTGTGATTGTTGTGTGATGTCAACGGCTTGGCGTATGCG
AGACCTTGTCTGGTTTCCTGTGCTCCTGCAATGATTCAAGTTCTACCTTG
TGCTGTCCGCGATTGTCCGCATTTCTTCGCGGAACTTTGCTATTTTTGTA
TTCTATCGTTTTGTCGTGTGGTCCTCCACACTACTCGTTCCGGTTGGATT
ATCTGGACGGATTTTGGAGGAAATTGGAAGAGGCCAGAATTGTTTCAATG
TGAAGGCGAGCAACAACGTAAGAGCTGGACGTCCACAAAGACTGCGGAAA
ATCTTTGGTATGATTGGCAAGTAGTGCAAATTGCCGCTTCACCGTAACTT
GTATGTTCTTTTGTGCCGGGGCTTTCCCAGCAGAACCCGACACCCAACAC
GCTGGGACTCACGACTGGGGGATGAATTTGTTGTACACCACGGACCTG
back to top

Coding sequence (CDS) from alignment at Scaffold_129:744426..746923+

>EsuBft525_17a-0001 ID=EsuBft525_17a-0001|Name=EsuBft525_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_129:744426..746923+ (Ectocarpus subulatus male Bft15b)
ATGCTTTCGGCGTTGGATATCCGCTACTTCTCGTGGCCCTACTTCTTCGC
CCTGCTCATCCTATCGGCTGGGGTAATAGCCCCGTTGATTGTGATGAAGT
CGAGACCCGCGGCGTTGTTCCGCACTGGAAGCGGTCGTATTCCGGAGTGA
back to top